FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Jacques Ravel

Research Profile

Genes & Molecular Sequences

Procedures

Sequence Analysis, DNA

Concepts & Ideas

Chemicals & Drugs

Living Beings

Occupations

Genomics

Anatomy

Disorders

Phenomena

Species Specificity

Co-author Network

Publications

TOP 3
Mark Eppinger; Peter Feng; Claire M Fraser; Kevin Galens; Mark K Mammel; Sonia Agrawal; Thomas A Cebula; Sean Daugherty; Chitrita DebRoy; Edward G Dudley; Lisa Sadzewicz; Naomi Sengamalay; Robert Soderlund; Luke Tallon; Phillip I Tarr; Jacques Ravel
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.
Paul J Planet; Ryan Rampersaud; Jacques Ravel; Ivette Santana-Cruz; Susan Whittier; Sean C Daugherty; Phyllis A Della-Latta; Robert Desalle; Saul R Hymes; Apurva Narechania; AJ Ratner
Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1.
Jean M Macklaim; Groesbeck P Parham; Jacques Ravel; Craig R Cohen; Gilbert Donders; Gregory B Gloor; Janet E Hill; Gregory Spear; Janneke van de Wijgert; Gregor Reid
Exploring a road map to counter misconceptions about the cervicovaginal microbiome and disease.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Jacques Ravel (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2013: Mark Eppinger; Peter Feng; Claire M Fraser; Kevin Galens; Mark K Mammel; Sonia Agrawal; Thomas A Cebula; Sean Daugherty; Chitrita DebRoy; Edward G Dudley; Lisa Sadzewicz; Naomi Sengamalay; Robert Soderlund; Luke Tallon; Phillip I Tarr; Jacques Ravel
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.
Genome announcements 2013;1(2):e0013412.
2013: Paul J Planet; Ryan Rampersaud; Jacques Ravel; Ivette Santana-Cruz; Susan Whittier; Sean C Daugherty; Phyllis A Della-Latta; Robert Desalle; Saul R Hymes; Apurva Narechania; AJ Ratner
Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1.
Genome announcements 2013;1(1):.
2012: Jean M Macklaim; Groesbeck P Parham; Jacques Ravel; Craig R Cohen; Gilbert Donders; Gregory B Gloor; Janet E Hill; Gregory Spear; Janneke van de Wijgert; Gregor Reid
Exploring a road map to counter misconceptions about the cervicovaginal microbiome and disease.
Reproductive sciences (Thousand Oaks, Calif.) 2012;19(11):1154-62.
2012: Rebecca M Brotman; Jane M Carlton; Melissa Conrad; Larry J Forney; Pawel Gajer; Ligia Peralta; Zaid Abdo; Kevin Ault; L Latey Bradford; Jacques Ravel
Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women.
Sexually transmitted diseases 2012;39(10):807-12.
2012: Roxana J Hickey; Jacob D Pierson; Jacques Ravel; Xia Zhou; Larry J Forney
Understanding vaginal microbiome complexity from an ecological perspective.
Translational research : the journal of laboratory and clinical medicine 2012;160(4):267-82.
2012: Roberto Flores; Mitchell H Gail; Jacques Ravel; Jianxin Shi; James J Goedert
Assessment of the human faecal microbiota: I. Measurement and reproducibility of selected enzymatic activities.
European journal of clinical investigation 2012;42(8):848-54.
2012: Roberto Flores; Mitchell H Gail; Pawel Gajer; Jacques Ravel; Jianxin Shi; James J Goedert
Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences.
European journal of clinical investigation 2012;42(8):855-63.
2012: Nur A Hasan; Erin Hine; M M Hoq; Anwar Huq; Huai Li; Joseph B Prosper; Jacques Ravel; Qi Su; Luke J Tallon; Elisa Taviani; Munirul Alam; Thomas A Cebula; Arlene Chen; Seon Young Choi; Philip W Clark; Alejandro Cravioto; Mark Eppinger; Claire M Fraser-Liggett; Keziah Furth; Bradd J Haley; Rita R Colwell
Genomic diversity of 2010 Haitian cholera outbreak strains.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(29):E2010-7.
2012: Pawel Gajer; Sara S K Koenig; Zhanshan Sam Ma; Zaid Abdo; Guoyun Bai; Rebecca M Brotman; Larry J Forney; Li Fu; Joyce Sakamoto; Ursel M E Schütte; Xue Zhong; Xia Zhou; Jacques Ravel
Temporal dynamics of the human vaginal microbiota.
Science translational medicine 2012;4(132):132ra52.
2012: Ashlee M Earl; Mark Eppinger; W. Florian Fricke; Roberto Kolter; Richard Losick; David Rasko; Sean Daugherty; Mary J Rosovitz; Jacques Ravel
Whole-genome sequences of Bacillus subtilis and close relatives.
Journal of bacteriology 2012;194(9):2378-9.
2012: Eric W Schmidt; Mohamed S Donia; W. Florian Fricke; John A McIntosh; Jacques Ravel
Origin and variation of tunicate secondary metabolites.
Journal of natural products 2012;75(2):295-304.
2012: Roberto Flores; Barbara Fuhrman; Mitchell H Gail; Pawel Gajer; Jacques Ravel; Jianxin Shi; Timothy D Veenstra; Xia Xu; James J Goedert
Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study.
Journal of translational medicine 2012;10():253.
2012: Jacques Ravel; Joyce Sakamoto; Li Fu; Gustavo F Doncel; Pawel Gajer; Sara S K Koenig; Christine K Mauck; Alison A Motsinger-Reif; Steven L Zeichner
Twice-daily application of HIV microbicides alter the vaginal microbiota.
mBio 2012;3(6):.
2012: Roberto Flores; Mitchell H Gail; Pawel Gajer; Jacques Ravel; Jianxin Shi; James J Goedert
Association of fecal microbial diversity and taxonomy with selected enzymatic functions.
PloS one 2012;7(6):e39745.
2012: Bing Ma; Larry J Forney; Jacques Ravel
Vaginal microbiome: rethinking health and disease.
Annual review of microbiology 2012;66():371-89.
2012: Guoyun Bai; May H Blanchard; Pawel Gajer; Bing Ma; Melissa Nandy; Jacques Ravel; Joyce Sakamoto; Hongqiu Yang; Rebecca M Brotman
Comparison of storage conditions for human vaginal microbiome studies.
PloS one 2012;7(5):e36934.
2012: Mark Eppinger; Sherry Mou; Lyndsay Radnedge; Jacques Ravel; Grant Severson; Nicholas Vietri; Gary Andersen; Patricia L Worsham
Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance.
PloS one 2012;7(3):e32911.
2012: Sanqing Yuan; Jacques Ravel; Zaid Abdo; Dora B Cohen; Larry J Forney
Evaluation of methods for the extraction and purification of DNA from the human microbiome.
PloS one 2012;7(3):e33865.
2012: Maria Sellitto; Gloria Serena; Craig Sturgeon; James R White; Guoyun Bai; Dustin Boothe; Carlo Catassi; W. Florian Fricke; Pawel Gajer; Rachel Gicquelais; Sara S K Koenig; Deborah Kryszak; Elaine Puppa; Jacques Ravel; Joyce Sakamoto; Alessio Fasano
Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants.
PloS one 2012;7(3):e33387.
2011: Mohamed S Donia; Michael C Schatz; Jacques Ravel; Sherif I Elshahawi; W. Florian Fricke; James Cox; Margo G Haygood; Adam M Phillippy; Frédéric Partensky; Joern Piel; James R White; Eric W Schmidt
Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(51):E1423-32.
2011: Mark Eppinger; Jacques Ravel; Mark K Mammel; Joseph E Leclerc; Thomas A Cebula
Genomic anatomy of Escherichia coli O157:H7 outbreaks.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(50):20142-7.
2011: Rachel Marine; Shawn W Polson; Jacques Ravel; Daniel Russell; Matthew Sullivan; Fraz Syed; Michael Dumas; Graham Hatfull; K Eric Wommack
Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA.
Applied and environmental microbiology 2011;77(22):8071-9.
2011: Amy J Vogler; David M Wagner; Mark Achtman; Stephen Beckstrom-Sternberg; Fabien Chan; Suzanne Chanteau; Mark Eppinger; Judy Lee; Roxanne Nera; Lila Rahalison; Bruno W Rasoamanana; Jacques Ravel; Philippe Roumagnac; Paul Keim
Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar.
PLoS neglected tropical diseases 2011;5(9):e1319.
2011: Jindong Zan; Jacques Ravel; W. Florian Fricke; Clay Fuqua; Russell T Hill
Genome sequence of Ruegeria sp. strain KLH11, an N-acylhomoserine lactone-producing bacterium isolated from the marine sponge Mycale laxissima.
Journal of bacteriology 2011;193(18):5011-2.
2011: Mark Eppinger; Scott Grayburn; Dieter Jahn; Mitrick A Johns; Sara S K Koenig; Kirthi K Kutumbaka; Vitaliy Lukyanchuk; Madeleine Martin; Ian Paulsen; Jacques Ravel; David R Riley; Mary J Rosovitz; Jürgen Seibel; Riaz Ul-Qamar; Barbara Ball; Rebekka Biedendieck; Christopher Braun; Erhard Bremer; Boyke Bunk; Sean Daugherty; Sourabh Dhingra; Janaka N Edirisinghe; Liam D H Elbourne; Heather Huot Creasy; Patricia S Vary
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.
Journal of bacteriology 2011;193(16):4199-213.
2011: W. Florian Fricke; J Eugene LeClerc; Mark K Mammel; Patrick F McDermott; Jacques Ravel; Carmen Tartera; David G White; Thomas Cebula
Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution.
Journal of bacteriology 2011;193(14):3556-68.
2011: Pelin Yilmaz; Linda Amaral-Zettler; Manimozhiyan Arumugam; Susanna Assunta-Sansone; Mark Bailey; Laura Baumgartner; Bruce W Birren; Martin J Blaser; Vivien Bonazzi; Tim Booth; Peer Bork; Frederic D Bushman; Pier Luigi Buttigieg; Patrick S G Chain; Emily Charlson; Guy Cochrane; James R Cole; Elizabeth K Costello; Peter Dawyndt; Todd DeSantis; Dawn Field; Noah Fierer; Jed A Fuhrman; Rachel E Gallery; Dirk Gevers; Richard A Gibbs; Jack A Gilbert; Antonio Gonzalez; Jeffrey I Gordon; Robert Guralnick; Wolfgang Hankeln; Sarah Highlander; Philip Hugenholtz; Christopher Hunter; Heather Huot-Creasy; Janet Jansson; Anjanette Johnston; Ilene Karsch-Mizrachi; Andrew L Kau; Scott T Kelley; Jerry Kennedy; Rob Knight; Dan Knights; Omry Koren; Renzo Kottmann; Justin Kuczynski; Nikos Kyrpides; Robert Larsen; Christian L Lauber; Teresa Legg; Ruth E Ley; Catherine A Lozupone; Wolfgang Ludwig; Donna Lyons; Eamonn Maguire; Barbara A Methé; Folker Meyer; Norman Morrison; Brian Muegge; Sara Nakielny; Karen E Nelson; Diana Nemergut; Josh D Neufeld; Lindsay K Newbold; Anna E Oliver; Norman R Pace; Giriprakash Palanisamy; Joonhong Park; Jörg Peplies; Joseph Petrosino; Lita Proctor; Elmar Pruesse; Christian Quast; Jeroen Raes; Sujeevan Ratnasingham; Jacques Ravel; David A Relman; Philippe Rocca-Serra; Inigo San Gil; Patrick D Schloss; Lynn M Schriml; Rohini Sinha; Michelle I Smith; Erica Sodergren; Aymé Spo; Peter Sterk; Jesse Stombaugh; James M Tiedje; Robert Vaughan; Doyle V Ward; George M Weinstock; Doug Wendel; Owen R White; Andrew Whiteley; Andreas Wilke; Jennifer Wortman; Tanya Yatsunenko; Frank Oliver Glöckner
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature biotechnology 2011;29(5):415-20.
2011: Mark Eppinger; Mark K Mammel; Joseph E Leclerc; Jacques Ravel; Thomas A Cebula
Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.
Applied and environmental microbiology 2011;77(9):2916-25.
2011: David Rasko; Patricia L Worsham; Terry G Abshire; Scott T Stanley; Jason D Bannan; Mark R Wilson; Richard J Langham; R Scott Decker; Lingxia Jiang; Timothy D Read; Adam M Phillippy; Steven L Salzberg; Mihai Pop; Matthew N Van Ert; Leo J Kenefic; Paul Keim; Claire M Fraser-Liggett; Jacques Ravel
Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(12):5027-32.
2011: Jacques Ravel; Pawel Gajer; Zaid Abdo; G Maria Schneider; Sara S K Koenig; Stacey L McCulle; Shara Karlebach; Reshma Gorle; Jennifer Russell; Carol O Tacket; Rebecca M Brotman; Catherine C Davis; Kevin A Ault; Ligia Peralta; Larry J Forney
Vaginal microbiome of reproductive-age women.
Proceedings of the National Academy of Sciences of the United States of America 2011;108 Suppl 1():4680-7.
2011: Michael D Dumas; Jack Gelb; Robin Morgan; Shawn W Polson; Jacques Ravel; Don Ritter; K Eric Wommack
Impacts of poultry house environment on poultry litter bacterial community composition.
PloS one 2011;6(9):e24785.
2011: Maximo Rivarola; Mary J Rosovitz; Amber L Williams; Jacques Ravel; Danny W Rice; Gerard J Allan; Stephen Beckstrom-Sternberg; Agnes P Chan; Jeffrey Foster; Heather Huot Creasy; Paul Keim; Hoda M Khouri; Xinyue Liu; Admasu Melake-Berhan; Daniela Puiu; Pablo D Rabinowicz
Castor bean organelle genome sequencing and worldwide genetic diversity analysis.
PloS one 2011;6(7):e21743.
2011: J Gregory Caporaso; Elizabeth K Costello; Noah Fierer; Pawel Gajer; Antonio Gonzalez; Jeffrey I Gordon; Dan Knights; Christian L Lauber; Jacques Ravel; Jesse Stombaugh; Donna Berg-Lyons; Rob Knight
Moving pictures of the human microbiome.
Genome biology 2011;12(5):R50.
2011: Mohamed S Donia; W. Florian Fricke; Jacques Ravel; Eric W Schmidt
Variation in tropical reef symbiont metagenomes defined by secondary metabolism.
PloS one 2011;6(3):e17897.
2011: Lance B Price; Cindy M Liu; Yelena M Frankel; Johan H Melendez; Maliha Aziz; Jordan Buchhagen; Tania Contente-Cuomo; David M Engelthaler; Paul Keim; Jacques Ravel; GERALD LAZARUS; Jonathan M Zenilman
Macroscale spatial variation in chronic wound microbiota: a cross-sectional study.
Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society 2011;19(1):80-8.
2010: Giovanna Morelli; Yajun Song; Camila J Mazzoni; Mark Eppinger; Philippe Roumagnac; David M Wagner; Mirjam Feldkamp; Barica Kusecek; Amy J Vogler; Yanjun Li; Yujun Cui; Nicholas R Thomson; Thibaut Jombart; Raphael Leblois; Peter Lichtner; Lila Rahalison; Jeannine M Petersen; Francois Balloux; Paul Keim; Thierry Wirth; Jacques Ravel; Ruifu Yang; Elisabeth Carniel; Mark Achtman
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.
Nature genetics 2010;42(12):1140-3.
2010: Agnes P Chan; Jonathan Crabtree; Qi Zhao; Hernan Lorenzi; Joshua Orvis; Daniela Puiu; Admasu Melake-Berhan; Kristine M Jones; Julia Redman; Grace Chen; Edgar B Cahoon; Melaku Gedil; Mario Stanke; Brian J Haas; Jennifer Wortman; Claire M Fraser-Liggett; Jacques Ravel; Pablo D Rabinowicz
Draft genome sequence of the oilseed species Ricinus communis.
Nature biotechnology 2010;28(9):951-6.
2010: Rebecca M Brotman; Jacques Ravel; Richard A Cone; Jonathan M Zenilman
Rapid fluctuation of the vaginal microbiota measured by Gram stain analysis.
Sexually transmitted infections 2010;86(4):297-302.
2010: Michael C Schatz; Adam M Phillippy; Pawel Gajer; Todd Z DeSantis; Gary L Andersen; Jacques Ravel
Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray.
Applied and environmental microbiology 2010;76(16):5636-8.
2010: David M Wagner; Janelle Runberg; Amy J Vogler; Judy Lee; Elizabeth Driebe; Lance B Price; David M Engelthaler; W. Florian Fricke; Jacques Ravel; Paul Keim
No resistance plasmid in Yersinia pestis, North America.
Emerging infectious diseases 2010;16(5):885-7.
2010: Larry J Forney; Pawel Gajer; Christopher J Williams; G Maria Schneider; Sara S K Koenig; Stacey L McCulle; Shara Karlebach; Rebecca M Brotman; Catherine C Davis; Kevin A Ault; Jacques Ravel
Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis.
Journal of clinical microbiology 2010;48(5):1741-8.
2010: Ursel M E Schütte; Zaid Abdo; James Foster; Jacques Ravel; John Bunge; Bjørn Solheim; Larry J Forney
Bacterial diversity in a glacier foreland of the high Arctic.
Molecular ecology 2010;19 Suppl 1():54-66.
2010: Mark Eppinger; Patricia L Worsham; Mikeljon P Nikolich; David R Riley; Yinong Sebastian; Sherry Mou; Mark Achtman; Luther E Lindler; Jacques Ravel
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.
Journal of bacteriology 2010;192(6):1685-99.
2010: Xia Zhou; Rebecca M Brotman; Pawel Gajer; Zaid Abdo; Ursel Schüette; Sam Ma; Jacques Ravel; Larry J Forney
Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth.
Infectious diseases in obstetrics and gynecology 2010;2010():737425.
2010: Jeffrey Foster; Gerard J Allan; Agnes P Chan; Pablo D Rabinowicz; Jacques Ravel; Paul J Jackson; Paul Keim
Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis).
BMC plant biology 2010;10():13.
2010: Lance B Price; Cindy M Liu; Kristine ERICA Johnson; Maliha Aziz; Matthew K Lau; Jolene Bowers; Jacques Ravel; Paul Keim; David Serwadda; Maria J Wawer; Ronald H Gray
The effects of circumcision on the penis microbiome.
PloS one 2010;5(1):e8422.
2009: Mark Eppinger; Zhaobiao Guo; Yinong Sebastian; Yajun Song; Luther E Lindler; Ruifu Yang; Jacques Ravel
Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China.
Journal of bacteriology 2009;191(24):7628-9.
2009: Garry S A Myers; S A Mathews; Mark Eppinger; C Mitchell; K K O'Brien; Owen R White; F Benahmed; Robert brunham; Timothy D Read; Jacques Ravel; Patrik M Bavoil; Peter Timms
Evidence that human Chlamydia pneumoniae was zoonotically acquired.
Journal of bacteriology 2009;191(23):7225-33.
2009: W. Florian Fricke; David Rasko; Jacques Ravel
The role of genomics in the identification, prediction, and prevention of biological threats.
PLoS biology 2009;7(10):e1000217.
2009: W. Florian Fricke; Patrick F McDermott; Mark K Mammel; Shaohua Zhao; Timothy J Johnson; David Rasko; Paula J Fedorka-Cray; Adriana Pedroso; Jean M Whichard; J Eugene Leclerc; David G White; Thomas A Cebula; Jacques Ravel
Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry.
Applied and environmental microbiology 2009;75(18):5963-71.
2009: W. Florian Fricke; Timothy J Welch; Patrick F McDermott; Mark K Mammel; J Eugene LeClerc; David G White; Thomas A Cebula; Jacques Ravel
Comparative genomics of the IncA/C multidrug resistance plasmid family.
Journal of bacteriology 2009;191(15):4750-7.
2009: Lance B Price; Cindy M Liu; Johan H Melendez; Yelena M Frankel; David Engelthaler; Maliha Aziz; Jolene Bowers; Rogan Rattray; Jacques Ravel; Christopher Kingsley; Paul Keim; GERALD LAZARUS; Jonathan M Zenilman
Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota.
PloS one 2009;4(7):e6462.
2009: Brian O Bachmann; Jacques Ravel
Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data.
Methods in enzymology 2009;458():181-217.
2009: Tatum S Simonson; Richard T Okinaka; Bingxiang Wang; W Ryan Easterday; Lynn Y Huynh; Jana M U'Ren; Meghan Dukerich; Shaylan Zanecki; Leo Kenefic; Jodi Beaudry; James M Schupp; Talima Pearson; David M Wagner; Alex R Hoffmaster; Jacques Ravel; Paul Keim
Bacillus anthracis in China and its relationship to worldwide lineages.
BMC microbiology 2009;9():71.
2009: Leo Kenefic; Talima Pearson; Richard T Okinaka; James M Schupp; David M Wagner; Alex R Hoffmaster; Carla B Trim; Carla P Trim; Wai-Kwan Chung; Jodi A Beaudry; Lingxia Jiang; Pawel Gajer; Jeffrey Foster; James I Mead; Jacques Ravel; Paul Keim
Pre-Columbian origins for North American anthrax.
PloS one 2009;4(3):e4813.
2009: Jacques Ravel; Lingxia Jiang; Scott T Stanley; Mark R Wilson; R Scott Decker; Timothy D Read; Patricia Worsham; Paul Keim; Steven L Salzberg; Claire M Fraser-Liggett; David Rasko
The complete genome sequence of Bacillus anthracis Ames "Ancestor".
Journal of bacteriology 2009;191(1):445-6.
2008: W. Florian Fricke; Meredith S Wright; Angela H Lindell; Derek M Harkins; Craig Baker-Austin; Jacques Ravel; Ramunas Stepanauskas
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5.
Journal of bacteriology 2008;190(20):6779-94.
2008: David Rasko; M J Rosovitz; Garry S A Myers; Emmanuel F Mongodin; W. Florian Fricke; Pawel Gajer; Jonathan Crabtree; Mohammed Sebaihia; Nicholas R Thomson; Roy Chaudhuri; ian henderson; Vanessa Sperandio; Jacques Ravel
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.
Journal of bacteriology 2008;190(20):6881-93.
2008: Rebecca M Brotman; Jacques Ravel
Ready or not: the molecular diagnosis of bacterial vaginosis.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2008;47(1):44-6.
2008: Mohamed S Donia; Jacques Ravel; Eric W Schmidt
A global assembly line for cyanobactins.
Nature chemical biology 2008;4(6):341-3.
2008: K Eric Wommack; Jaysheel Bhavsar; Jacques Ravel
Metagenomics: read length matters.
Applied and environmental microbiology 2008;74(5):1453-63.
2008: Steven E Schutzer; Linda R K Schlater; Catherine M Ronning; David DeShazer; Benjamin J Luft; John J Dunn; Jacques Ravel; Claire M Fraser-Liggett; William C Nierman
Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists.
PloS one 2008;3(4):e2058.
2007: Mark Eppinger; Mary J Rosovitz; W. Florian Fricke; David Rasko; Galina Kokorina; Corinne Fayolle; Luther E Lindler; Elisabeth Carniel; Jacques Ravel
The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever.
PLoS genetics 2007;3(8):e142.
2007: Keehoon Lee; J William Costerton; Jacques Ravel; Raymond K Auerbach; David M Wagner; Paul Keim; Jeff Leid
Phenotypic and functional characterization of Bacillus anthracis biofilms.
Microbiology (Reading, England) 2007;153(Pt 6):1693-701.
2007: Raymond K Auerbach; Apichai Tuanyok; William S Probert; Leo Kenefic; Amy J Vogler; David Bruce; Christine Munk; Thomas S Brettin; Mark Eppinger; Jacques Ravel; David M Wagner; Paul Keim
Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America.
PloS one 2007;2(8):e770.
2007: Matthew N Van Ert; W Ryan Easterday; Lynn Y Huynh; Richard T Okinaka; Martin E Hugh-Jones; Jacques Ravel; Shaylan Zanecki; Talima Pearson; Tatum S Simonson; Jana M U'Ren; Sergey M Kachur; Rebecca R Leadem-Dougherty; Shane D Rhoton; Guenevier Zinser; Jason Farlow; Pamala R Coker; Kimothy Smith; Bingxiang Wang; Leo Kenefic; Claire M Fraser-Liggett; David M Wagner; Paul Keim
Global genetic population structure of Bacillus anthracis.
PloS one 2007;2(5):e461.
2007: Timothy J Welch; W. Florian Fricke; Patrick F McDermott; David G White; Marie-Laure ROSSO; David Rasko; Mark K Mammel; Mark Eppinger; Mary J Rosovitz; David Wagner; Lila Rahalison; J Eugene LeClerc; Jeffrey M Hinshaw; Luther E Lindler; Thomas Cebula; Elisabeth Carniel; Jacques Ravel
Multiple antimicrobial resistance in plague: an emerging public health risk.
PloS one 2007;2(3):e309.
2007: Matthew N Van Ert; W Ryan Easterday; Tatum S Simonson; Jana M U'Ren; Talima Pearson; Leo Kenefic; Joseph D Busch; Lynn Y Huynh; Meghan Dukerich; Carla B Trim; Jodi Beaudry; Amy Welty-Bernard; Timothy Read; Claire M Fraser-Liggett; Jacques Ravel; Paul Keim
Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain.
Journal of clinical microbiology 2007;45(1):47-53.
2007: David Rasko; Mary J Rosovitz; Ole Andreas Økstad; Derrick E Fouts; Lingxia Jiang; Regina Z Cer; Anne-Brit Kolstø; Steven R Gill; Jacques Ravel
Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1.
Journal of bacteriology 2007;189(1):52-64.
2006: Mohamed S Donia; Brian J Hathaway; Sebastian Sudek; Margo G Haygood; Mary J Rosovitz; Jacques Ravel; Eric W Schmidt
Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.
Nature chemical biology 2006;2(12):729-35.
2006: Michael P Dempsey; Joseph Nietfeldt; Jacques Ravel; Steven H Hinrichs; Robert Crawford; Andrew K Benson
Paired-end sequence mapping detects extensive genomic rearrangement and translocation during divergence of Francisella tularensis subsp. tularensis and Francisella tularensis subsp. holarctica populations.
Journal of bacteriology 2006;188(16):5904-14.
2006: Garry S A Myers; David Rasko; Jackie K Cheung; Jacques Ravel; Rekha Seshadri; Robert T DeBoy; Qinghu Ren; John Joseph Varga; Milena M Awad; Lauren M Brinkac; Sean C Daugherty; Daniel H Haft; Robert J Dodson; Ramana Madupu; William C Nelson; M J Rosovitz; Steven A Sullivan; Hoda Khouri; George I Dimitrov; Kisha L Watkins; Stephanie Mulligan; Jonathan Benton; Diana Radune; Derek J Fisher; Helen S Atkins; Tom Hiscox; B Helen Jost; Stephen J Billington; J Glenn Songer; Bruce A McClane; Richard Titball; Julian I Rood; Stephen B Melville; Ian Paulsen
Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.
Genome research 2006;16(8):1031-40.
2006: Claudia M Romero; David DeShazer; Tamara Feldblyum; Jacques Ravel; Donald Woods; Heenam Stanley Kim; Yan Yu; Catherine M Ronning; William C Nierman
Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts.
BMC genomics 2006;7():228.
2005: Ian Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T Deboy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Steven A Sullivan; Mary J Rosovitz; Michelle G Giglio; Liwei Zhou; Davd J Schneider; Samuel Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Nature biotechnology 2005;23(7):873-8.
2005: Eric W Schmidt; James T Nelson; David Rasko; Sebastian Sudek; Jonathan Eisen; Margo G Haygood; Jacques Ravel
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(20):7315-20.
2005: Bruce Budowle; Steven E Schutzer; Michael S Ascher; Ronald M Atlas; James P Burans; Ranajit Chakraborty; John J Dunn; Claire M Fraser-Liggett; David R Franz; Terrance J Leighton; Stephen A Morse; Randall S Murch; Jacques Ravel; Daniel L Rock; Thomas R Slezak; Stephan P Velsko; Anne C Walsh; Ronald A Walters
Toward a system of microbial forensics: from sample collection to interpretation of evidence.
Applied and environmental microbiology 2005;71(5):2209-13.
2005: David Rasko; Michael R Altherr; Cliff S Han; Jacques Ravel
Genomics of the Bacillus cereus group of organisms.
FEMS microbiology reviews 2005;29(2):303-29.
2005: Steven R Gill; Derrick E Fouts; Gordon L Archer; Emmanuel F Mongodin; Robert T Deboy; Jacques Ravel; Ian Paulsen; James F Kolonay; Lauren M Brinkac; Maureen J Beanan; Robert J Dodson; Sean C Daugherty; Ramana Madupu; Samuel V Angiuoli; A Scott Durkin; Daniel H Haft; Jessica Vamathevan; Hoda Khouri; Teresa Utterback; Chris Lee; George Dimitrov; Lingxia Jiang; Haiying Qin; Janice Weidman; Kevin Tran; Kathy Kang; Ioana R Hance; Karen E Nelson; Claire M Fraser-Liggett
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
Journal of bacteriology 2005;187(7):2426-38.
2005: Jacques Ravel; Claire M Fraser-Liggett
Genomics at the genus scale.
Trends in microbiology 2005;13(3):95-7.
2005: Derrick E Fouts; Emmanuel F Mongodin; Robert Mandrell; William G Miller; David Rasko; Jacques Ravel; Lauren M Brinkac; Robert T Deboy; Craig T Parker; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Ramana Madupu; Steven A Sullivan; Jyoti U Shetty; Mobolanle A Ayodeji; Alla Shvartsbeyn; Michael C Schatz; Jonathan H Badger; Claire M Fraser-Liggett; Karen E Nelson
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
PLoS biology 2005;3(1):e15.
2005: Zwick Michael; Farrell Mcafee; David J Cutler; Timothy D Read; Jacques Ravel; Gregory R Bowman; Darrell R Galloway; Alfred Mateczun
Microarray-based resequencing of multiple Bacillus anthracis isolates.
Genome biology 2005;6(1):R10.
2005: David Rasko; Garry S A Myers; Jacques Ravel
Visualization of comparative genomic analyses by BLAST score ratio.
BMC bioinformatics 2005;6():2.
2004: Naomi Ward; Øivind Larsen; James Sakwa; Live Bruseth; Hoda Khouri; A Scott Durkin; George Dimitrov; Lingxia Jiang; David Scanlan; Katherine H Kang; Matt Lewis; Karen E Nelson; Barbara Methé; Martin Wu; John F Heidelberg; Ian Paulsen; Derrick Fouts; Jacques Ravel; Hervé Tettelin; Qinghu Ren; Tim Read; Robert T DeBoy; Rekha Seshadri; Steven L Salzberg; Harald B Jensen; Nils Kåre Birkeland; William C Nelson; Robert J Dodson; Svenn H Grindhaug; Ingeborg Holt; Ingvar Eidhammer; Inge Jonasen; Susan Vanaken; Terry Utterback; Tamara V Feldblyum; Claire M Fraser-Liggett; Johan R Lillehaug; Jonathan Eisen
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).
PLoS biology 2004;2(10):e303.
2004: Talima Pearson; Joseph D Busch; Jacques Ravel; Timothy D Read; Shane D Rhoton; Jana M U'Ren; Tatum S Simonson; Sergey M Kachur; Rebecca R Leadem; Michelle L Cardon; Matthew N Van Ert; Lynn Y Huynh; Claire M Fraser-Liggett; Paul Keim
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(37):13536-41.
2004: Marcie L Baer; Jacques Ravel; Silvia A. Pineiro; Diana Guether-Borg; Henry N Williams
Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov.
International journal of systematic and evolutionary microbiology 2004;54(Pt 4):1011-6.
2004: Michele Gunsior; Steven D Breazeale; Amanda J Lind; Jacques Ravel; James W Janc; Craig A Townsend
The biosynthetic gene cluster for a monocyclic beta-lactam antibiotic, nocardicin A.
Chemistry & biology 2004;11(7):927-38.
2004: Alex R Hoffmaster; Jacques Ravel; David Rasko; Gail D Chapman; Michael D Chute; Chung K Marston; Barun K De; Claudio T Sacchi; Collette Fitzgerald; Leonard W Mayer; Martin C J Maiden; Fergus G Priest; Margaret Barker; Lingxia Jiang; Regina Z Cer; Jennifer Rilstone; Scott N Peterson; Robbin S Weyant; Darrell R Galloway; Timothy D Read; Tanja Popovic; Claire M Fraser-Liggett
Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(22):8449-54.
2004: Michele Gunsior; Jacques Ravel; Gregory L Challis; Craig A Townsend
Engineering p-hydroxyphenylpyruvate dioxygenase to a p-hydroxymandelate synthase and evidence for the proposed benzene oxide intermediate in homogentisate formation.
Biochemistry 2004;43(3):663-74.
2004: Karen E Nelson; Derrick E Fouts; Emmanuel F Mongodin; Jacques Ravel; Robert T DeBoy; James F Kolonay; David Rasko; Samuel V Angiuoli; Steven R Gill; Ian Paulsen; Jeremy Peterson; Owen R White; William C Nelson; William Nierman; Maureen J Beanan; Lauren M Brinkac; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Ramana Madupu; Daniel H Haft; Jeremy Selengut; Susan Van Aken; Hoda Khouri; Nadia Fedorova; Heather Forberger; Bao Tran; Sophia Kathariou; Laura D Wonderling; Gaylen A Uhlich; Darrell O Bayles; John B Luchansky; Claire M Fraser-Liggett
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Nucleic acids research 2004;32(8):2386-95.
2004: David Rasko; Jacques Ravel; Ole Andreas Økstad; Erlendur Helgason; Regina Z Cer; Lingxia Jiang; Kelly A Shores; Derrick E Fouts; Nicolas J Tourasse; Samuel V Angiuoli; James F Kolonay; William C Nelson; Anne-Brit Kolstø; Claire M Fraser-Liggett; Timothy D Read
The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.
Nucleic acids research 2004;32(3):977-88.
2004: Hongbin Liu; Nicholas H Bergman; Brendan Thomason; Shamira Shallom; Alyson Hazen; Joseph Crossno; David Rasko; Jacques Ravel; Timothy D Read; Scott N Peterson; John Yates; Philip C Hanna
Formation and composition of the Bacillus anthracis endospore.
Journal of bacteriology 2004;186(1):164-78.
2003: Jacques Ravel; Pierre Cornelis
Genomics of pyoverdine-mediated iron uptake in pseudomonads.
Trends in microbiology 2003;11(5):195-200.
2002: Dimitris Mossialos; Urs A Ochsner; Christine Baysse; Patrice Chablain; Jean-Paul Pirnay; Nico Koedam; Herbert Budzikiewicz; Diana Uría Fernández; Mathias Schäfer; Jacques Ravel; Pierre Cornelis
Identification of new, conserved, non-ribosomal peptide synthetases from fluorescent pseudomonads involved in the biosynthesis of the siderophore pyoverdine.
Molecular microbiology 2002;45(6):1673-85.
2002: N Ramaiah; Jacques Ravel; W L Straube; Russell T Hill; Rita R Colwell
Entry of Vibrio harveyi and Vibrio fischeri into the viable but nonculturable state.
Journal of applied microbiology 2002;93(1):108-16.
2000: Gregory L Challis; Jacques Ravel
Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase.
FEMS microbiology letters 2000;187(2):111-4.
2000: Jacques Ravel; Jocelyne DiRuggiero; Frank Thomson Robb; Russell T Hill
Cloning and sequence analysis of the mercury resistance operon of Streptomyces sp. Strain CHR28 reveals a novel putative second regulatory gene.
Journal of bacteriology 2000;182(8):2345-9.
2000: Gregory L Challis; Jacques Ravel; Craig A Townsend
Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains.
Chemistry & biology 2000;7(3):211-24.
2000: Jacques Ravel; E M Wellington; Russell T Hill
Interspecific transfer of Streptomyces giant linear plasmids in sterile amended soil microcosms.
Applied and environmental microbiology 2000;66(2):529-34.
2000: Marcie L Baer; Jacques Ravel; J Chun; Russell T Hill; Henry N Williams
A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively.
International journal of systematic and evolutionary microbiology 2000;50 Pt 1():219-24.
1998: Jacques Ravel; H Schrempf; Russell T Hill
Mercury resistance is encoded by transferable giant linear plasmids in two chesapeake bay Streptomyces strains.
Applied and environmental microbiology 1998;64(9):3383-8.
1998: Jacques Ravel; María J Amoroso; Rita R Colwell; Russell T Hill
Mercury-resistant actinomycetes from the Chesapeake Bay.
FEMS microbiology letters 1998;162(1):177-84.
1997: Jocelyne DiRuggiero; N Santangelo; Z Nackerdien; Jacques Ravel; Frank Thomson Robb
Repair of extensive ionizing-radiation DNA damage at 95 degrees C in the hyperthermophilic archaeon Pyrococcus furiosus.
Journal of bacteriology 1997;179(14):4643-5.
1995: Jacques Ravel; I T Knight; C E Monahan; Russell T Hill; Rita R Colwell
Temperature-induced recovery of Vibrio cholerae from the viable but nonculturable state: growth or resuscitation?
Microbiology (Reading, England) 1995;141 ( Pt 2)():377-83.
1994: Jacques Ravel; Russell T Hill; Rita R Colwell
Isolation of a Vibrio cholerae transposon-mutant with an altered viable but nonculturable response.
FEMS microbiology letters 1994;120(1-2):57-61.