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Dietrich Rebholz-Schuhmann

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Concepts & Ideas

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Occupations

Chemicals & Drugs

Proteins

Physiology

Pattern Recognition, Automated

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Publications

TOP 3
Samuel Croset; John P Overington; Dietrich Rebholz-Schuhmann
Brain: biomedical knowledge manipulation.
Ian Harrow; David Hoole; Richard Kidd; Michael Braxenthaler; Ian Dix; Wendy Filsell; Richard Gedye; Jabe Wilson; Peter Woollard; Dietrich Rebholz-Schuhmann
Towards Virtual Knowledge Broker services for semantic integration of life science literature and data sources.
Chen Li; Miguel Arregui; Antonio Jimeno-Yepes; Harald Kirsch; Dietrich Rebholz-Schuhmann
PCorral--interactive mining of protein interactions from MEDLINE.

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All Publications

2013: Samuel Croset; John P Overington; Dietrich Rebholz-Schuhmann
Brain: biomedical knowledge manipulation.
Bioinformatics (Oxford, England) 2013;29(9):1238-9.
2013: Ian Harrow; David Hoole; Richard Kidd; Michael Braxenthaler; Ian Dix; Wendy Filsell; Richard Gedye; Jabe Wilson; Peter Woollard; Dietrich Rebholz-Schuhmann
Towards Virtual Knowledge Broker services for semantic integration of life science literature and data sources.
Drug discovery today 2013;18(9-10):428-34.
2013: Chen Li; Miguel Arregui; Antonio Jimeno-Yepes; Harald Kirsch; Dietrich Rebholz-Schuhmann
PCorral--interactive mining of protein interactions from MEDLINE.
Database : the journal of biological databases and curation 2013;2013():bat030.
2013: Joerg Hakenberg; Goran Nenadic; Dietrich Rebholz-Schuhmann; Jin-Dong Kim
Literature mining solutions for life science research.
Advances in bioinformatics 2013;2013():320436.
2012: Dietrich Rebholz-Schuhmann; Anika Oellrich; Robert Hoehndorf
Text-mining solutions for biomedical research: enabling integrative biology.
Nature reviews. Genetics 2012;13(12):829-39.
2012: Georg Fuellen; Andreas Hoeflich; Jan Hoeijemakers; Hans A Kestler; Axel Kowald; Steffen Priebe; Dietrich Rebholz-Schuhmann; Bernd Schmeck; Ulf Schmitz; Alexandra Stolzing; Jürgen Sühnel; Jörn Dengjel; Daniel Wuttke; Julio Vera
Systems biology and bioinformatics in aging research: a workshop report.
Rejuvenation research 2012;15(6):631-41.
2012: Anika Oellrich; Georgios V Gkoutos; Robert Hoehndorf; Dietrich Rebholz-Schuhmann
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.
Journal of biomedical semantics 2012;3 Suppl 2():S1.
2012: David Campos; Ian Lewin; Sérgio Matos; José Luís Oliveira; Dietrich Rebholz-Schuhmann
Harmonization of gene/protein annotations: towards a gold standard MEDLINE.
Bioinformatics (Oxford, England) 2012;28(9):1253-61.
2012: Maria Liakata; Colin Batchelor; Simon Dobnik; Shyamasree Saha; Dietrich Rebholz-Schuhmann
Automatic recognition of conceptualization zones in scientific articles and two life science applications.
Bioinformatics (Oxford, England) 2012;28(7):991-1000.
2012: Maria Liakata; Janna Hastings; Jee-Hyub Kim; Shyamasree Saha; Dietrich Rebholz-Schuhmann
Three hybrid classifiers for the detection of emotions in suicide notes.
Biomedical informatics insights 2012;5(Suppl. 1):175-84.
2012: Anika Oellrich; Georgios V Gkoutos; Robert Hoehndorf; Dietrich Rebholz-Schuhmann
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases.
PloS one 2012;7(6):e38937.
2011: Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala Wimalaratne; Dietrich Rebholz-Schuhmann; Paul Schofield; Georgios V Gkoutos
A common layer of interoperability for biomedical ontologies based on OWL EL.
Bioinformatics (Oxford, England) 2011;27(7):1001-8.
2011: Paul Thompson; Giulia Venturi; Nicoletta Calzolari; Riccardo del Gratta; Vivian Lee; Simone Marchi; John McNaught; Monica Monachini; Simonetta Montemagni; Piotr Pezik; Valeria Quochi; Dietrich Rebholz-Schuhmann; C J Rupp; Yutaka Sasaki; Sophia Ananiadou
The BioLexicon: a large-scale terminological resource for biomedical text mining.
BMC bioinformatics 2011;12():397.
2011: Robert Hoehndorf; Anika Oellrich; Dietrich Rebholz-Schuhmann; Paul N Schofield; Michel Dumontier; Georgios V Gkoutos
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning.
PloS one 2011;6(7):e22006.
2010: Robert Hoehndorf; Anika Oellrich; Dietrich Rebholz-Schuhmann
Interoperability between phenotype and anatomy ontologies.
Bioinformatics (Oxford, England) 2010;26(24):3112-8.
2010: Dietrich Rebholz-Schuhmann; S Kavaliauskas; P Pezik
PaperMaker: validation of biomedical scientific publications.
Bioinformatics (Oxford, England) 2010;26(7):982-4.
2010: Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Miguel Arregui; Harald Kirsch
Measuring prediction capacity of individual verbs for the identification of protein interactions.
Journal of biomedical informatics 2010;43(2):200-7.
2010: Dietrich Rebholz-Schuhmann; Antonio José Jimeno Yepes; Erik M Van Mulligen; Ning Kang; Jan Kors; David Milward; Peter Corbett; Ekaterina Buyko; Elena Beisswanger; Udo Hahn
CALBC silver standard corpus.
Journal of bioinformatics and computational biology 2010;8(1):163-79.
2010: Robert Hoehndorf; Anika Oellrich; Michel Dumontier; Janet Kelso; Dietrich Rebholz-Schuhmann; Heinrich Herre
Relations as patterns: bridging the gap between OBO and OWL.
BMC bioinformatics 2010;11():441.
2010: Dietrich Rebholz-Schuhmann; Goran Nenadic
Biomedical semantics: the hub for biomedical research 2.0.
Journal of biomedical semantics 2010;1(1):1.
2009: Andra Waagmeester; Piotr Pezik; Susan Coort; Franck Tourniaire; Chris T A Evelo; Dietrich Rebholz-Schuhmann
Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism.
Omics : a journal of integrative biology 2009;13(5):367-79.
2009: Dolf Trieschnigg; Piotr Pezik; Vivian Lee; Franciska de Jong; Wessel Kraaij; Dietrich Rebholz-Schuhmann
MeSH Up: effective MeSH text classification for improved document retrieval.
Bioinformatics (Oxford, England) 2009;25(11):1412-8.
2009: Antonio Jimeno-Yepes; Rafael Berlanga-Llavori; Dietrich Rebholz-Schuhmann
Exploitation of ontological resources for scientific literature analysis: searching genes and related diseases.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2009;2009():7073-8.
2009: Antonio Jimeno-Yepes; Ernesto Jiménez-Ruiz; Rafael Berlanga-Llavori; Dietrich Rebholz-Schuhmann
Reuse of terminological resources for efficient ontological engineering in Life Sciences.
BMC bioinformatics 2009;10 Suppl 10():S4.
2009: Kevin Nagel; Antonio Jimeno-Yepes; Dietrich Rebholz-Schuhmann
Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.
BMC bioinformatics 2009;10 Suppl 8():S4.
2009: Christopher J O Baker; Dietrich Rebholz-Schuhmann
Between proteins and phenotypes: annotation and interpretation of mutations.
BMC bioinformatics 2009;10 Suppl 8():I1.
2008: Jung-Jae Kim; Dietrich Rebholz-Schuhmann
Categorization of services for seeking information in biomedical literature: a typology for improvement of practice.
Briefings in bioinformatics 2008;9(6):452-65.
2008: Jung-Jae Kim; Piotr Pezik; Dietrich Rebholz-Schuhmann
MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline.
Bioinformatics (Oxford, England) 2008;24(11):1410-2.
2008: Dietrich Rebholz-Schuhmann; Miguel Arregui; Sylvain Gaudan; Harald Kirsch; Antonio Jimeno
Text processing through Web services: calling Whatizit.
Bioinformatics (Oxford, England) 2008;24(2):296-8.
2008: Russ B Altman; Casey M Bergman; Judith Blake; christian blaschke; Aaron M Cohen; Frank Gannon; Les Grivell; Udo Hahn; William Hersh; Lynette Hirschman; Lars Juhl Jensen; Martin Krallinger; Barend Mons; Seán O'Donoghue; Manuel Peitsch; Dietrich Rebholz-Schuhmann; Hagit Shatkay; Carmen Galvez
Text mining for biology--the way forward: opinions from leading scientists.
Genome biology 2008;9 Suppl 2():S7.
2008: Samira Jaeger; Sylvain Gaudan; Ulf Leser; Dietrich Rebholz-Schuhmann
Integrating protein-protein interactions and text mining for protein function prediction.
BMC bioinformatics 2008;9 Suppl 8():S2.
2008: Elena Beisswanger; Vivian Lee; Jung-Jae Kim; Dietrich Rebholz-Schuhmann; Andrea Splendiani; Olivier Dameron; Stefan Schulz; Udo Hahn
Gene Regulation Ontology (GRO): design principles and use cases.
Studies in health technology and informatics 2008;136():9-14.
2008: Irena Spasić; Daniel Schober; Susanna-Assunta Sansone; Dietrich Rebholz-Schuhmann; Douglas B Kell; Norman W Paton
Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.
BMC bioinformatics 2008;9 Suppl 5():S5.
2008: Antonio Jimeno; Ernesto Jimenez-Ruiz; Vivian Lee; Sylvain Gaudan; Rafael Berlanga; Dietrich Rebholz-Schuhmann
Assessment of disease named entity recognition on a corpus of annotated sentences.
BMC bioinformatics 2008;9 Suppl 3():S3.
2007: Patrick Ruch; Célia Boyer; Christine Chichester; Imad Tbahriti; Antoine Geissbühler; Paul Fabry; Julien Gobeill; Violaine Pillet; Dietrich Rebholz-Schuhmann; Christian Lovis; Anne-Lise Veuthey
Using argumentation to extract key sentences from biomedical abstracts.
International journal of medical informatics 2007;76(2-3):195-200.
2007: Dietrich Rebholz-Schuhmann; Harald Kirsch; Miguel Arregui; Sylvain Gaudan; Mark Riethoven; Peter Stoehr
EBIMed--text crunching to gather facts for proteins from Medline.
Bioinformatics (Oxford, England) 2007;23(2):e237-44.
2006: Jacek Blazewicz; Fred Glover; Marta Kasprzak; Wojciech T Markiewicz; Ceyda Oğuz; Dietrich Rebholz-Schuhmann; Aleksandra Swiercz
Dealing with repetitions in sequencing by hybridization.
Computational biology and chemistry 2006;30(5):313-20.
2006: Dietrich Rebholz-Schuhmann; Harald Kirsch; Miguel Arregui; Sylvain Gaudan; Mark Rynbeek; Peter Stoehr
Protein annotation by EBIMed.
Nature biotechnology 2006;24(8):902-3.
2006: Harald Kirsch; Sylvain Gaudan; Dietrich Rebholz-Schuhmann
Distributed modules for text annotation and IE applied to the biomedical domain.
International journal of medical informatics 2006;75(6):496-500.
2006: Francisco M Couto; Mário Silva; Vivian Lee; Emily Dimmer; Evelyn Camon; Rolf Apweiler; Harald Kirsch; Dietrich Rebholz-Schuhmann
GOAnnotator: linking protein GO annotations to evidence text.
Journal of biomedical discovery and collaboration 2006;1():19.
2005: Sylvain Gaudan; Harald Kirsch; Dietrich Rebholz-Schuhmann
Resolving abbreviations to their senses in Medline.
Bioinformatics (Oxford, England) 2005;21(18):3658-64.
2005: Dietrich Rebholz-Schuhmann; Harald Kirsch; Francisco Couto
Facts from text--is text mining ready to deliver?
PLoS biology 2005;3(2):e65.
2005: Patrick Ruch; Robert Baud; Christine Chichester; Antoine Geissbühler; Frédérique Lisacek; Johann Marty; Dietrich Rebholz-Schuhmann; Imad Tbahriti; Anne-Lise Veuthey
Extracting key sentences with latent argumentative structuring.
Studies in health technology and informatics 2005;116():835-40.
2004: Dietrich Rebholz-Schuhmann; Stephane Marcel; Sylvie Albert; Ralf Tolle; Georg Casari; Harald Kirsch
Automatic extraction of mutations from Medline and cross-validation with OMIM.
Nucleic acids research 2004;32(1):135-42.
2003: Sylvie Albert; Sylvain Gaudan; Heidrun Knigge; Andreas Raetsch; Asuncion Delgado; Bettina Huhse; Harald Kirsch; Michael Albers; Dietrich Rebholz-Schuhmann; Manfred Koegl
Computer-assisted generation of a protein-interaction database for nuclear receptors.
Molecular endocrinology (Baltimore, Md.) 2003;17(8):1555-67.