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Thomas Record

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Thermodynamics

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Escherichia coli

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Emily J Guinn; Michael J Kerins; Kathryn E Mangold; Joseph L McDevitt; Wolf E Merker; Gregory W Muth; Hyo Keun Cha; Samuel W Engelsgjerd; Ryan Ritzer; Jeffrey J Schwinefus; Perry J Thompson; M Thomas Record
Quantifying functional group interactions that determine urea effects on nucleic Acid helix formation.
Amanda Drennan; Theodore Gries; Mark Kraemer; Irina Artsimovitch; Michael Capp; Emily Ruff; Carol Sheppard; Sivaramesh Wigneshweraraj; M Thomas Record
Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.
Emily J Guinn; Laurel M Pegram; Michelle N Pollock; Michael W Capp; M Thomas Record
Quantifying why urea is a protein denaturant, whereas glycine betaine is a protein stabilizer.

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2013: Emily J Guinn; Michael J Kerins; Kathryn E Mangold; Joseph L McDevitt; Wolf E Merker; Gregory W Muth; Hyo Keun Cha; Samuel W Engelsgjerd; Ryan Ritzer; Jeffrey J Schwinefus; Perry J Thompson; M Thomas Record
Quantifying functional group interactions that determine urea effects on nucleic Acid helix formation.
Journal of the American Chemical Society 2013;135(15):5828-38.
2012: Amanda Drennan; Theodore Gries; Mark Kraemer; Irina Artsimovitch; Michael Capp; Emily Ruff; Carol Sheppard; Sivaramesh Wigneshweraraj; M Thomas Record
Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.
Biochemistry 2012;51(47):9447-59.
2011: Emily J Guinn; Laurel M Pegram; Michelle N Pollock; Michael W Capp; M Thomas Record
Quantifying why urea is a protein denaturant, whereas glycine betaine is a protein stabilizer.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(41):16932-7.
2011: Ruth M Saecker; M Thomas Record; Pieter L deHaseth
Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis.
Journal of molecular biology 2011;412(5):754-71.
2011: D B Knowles; Andrew S LaCroix; Nickolas F Deines; Irina Shkel; M Thomas Record
Separation of preferential interaction and excluded volume effects on DNA duplex and hairpin stability.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(31):12699-704.
2011: Junseock Koh; Ruth M Saecker; Irina Shkel; M Thomas Record
Nonspecific DNA binding and bending by HUαβ: interfaces of the three binding modes characterized by salt-dependent thermodynamics.
Journal of molecular biology 2011;410(2):241-67.
2011: Kem A Sochacki; Irina A Shkel; M Thomas Record; James C Weisshaar
Protein diffusion in the periplasm of E. coli under osmotic stress.
Biophysical journal 2011;100(1):22-31.
2010: Theodore J Gries; Wayne S Kontur; Michael W Capp; Ruth M Saecker; M Thomas Record
One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(23):10418-23.
2010: Wayne S Kontur; Michael W Capp; Theodore J Gries; Ruth M Saecker; M Thomas Record
Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate.
Biochemistry 2010;49(20):4361-73.
2010: Laurel M Pegram; Timothy Wendorff; Robert Erdmann; Irina Shkel; Dana Bellissimo; Daniel J Felitsky; M Thomas Record
Why Hofmeister effects of many salts favor protein folding but not DNA helix formation.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(17):7716-21.
2010: Liang Ma; Laurel Pegram; M Thomas Record; Qiang Cui
Preferential interactions between small solutes and the protein backbone: a computational analysis.
Biochemistry 2010;49(9):1954-62.
2010: Jeff D Ballin; James P Prevas; Christina R Ross; Eric A Toth; Gerald M Wilson; M Thomas Record
Contributions of the histidine side chain and the N-terminal alpha-amino group to the binding thermodynamics of oligopeptides to nucleic acids as a function of pH.
Biochemistry 2010;49(9):2018-30.
2009: Michael W Capp; Laurel M Pegram; Ruth M Saecker; Megan Kratz; Demian Riccardi; Timothy Wendorff; Jonathan G Cannon; M Thomas Record
Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.
Biochemistry 2009;48(43):10372-9.
2009: Lisa A Schroeder; Theodore J Gries; Ruth M Saecker; M Thomas Record; Michael E Harris; Pieter L deHaseth
Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA.
Journal of molecular biology 2009;385(2):339-49.
2009: Laurel M Pegram; M Thomas Record
Quantifying the roles of water and solutes (denaturants, osmolytes, and Hofmeister salts) in protein and model processes using the solute partitioning model.
Methods in molecular biology (Clifton, N.J.) 2009;490():179-93.
2008: Kirk A Vander Meulen; Jared H Davis; Trenton R Foster; M Thomas Record; Samuel E Butcher
Thermodynamics and folding pathway of tetraloop receptor-mediated RNA helical packing.
Journal of molecular biology 2008;384(3):702-17.
2008: Junseock Koh; Ruth M Saecker; M Thomas Record
DNA binding mode transitions of Escherichia coli HU(alphabeta): evidence for formation of a bent DNA--protein complex on intact, linear duplex DNA.
Journal of molecular biology 2008;383(2):324-46.
2008: Laurel M Pegram; M Thomas Record
Thermodynamic origin of hofmeister ion effects.
The journal of physical chemistry. B 2008;112(31):9428-36.
2008: Kirk A Vander Meulen; Ruth M Saecker; M Thomas Record
Formation of a wrapped DNA-protein interface: experimental characterization and analysis of the large contributions of ions and water to the thermodynamics of binding IHF to H' DNA.
Journal of molecular biology 2008;377(1):9-27.
2008: Wayne S Kontur; Ruth M Saecker; Michael W Capp; M Thomas Record
Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: characterization of conformational changes by rapid [perturbant] upshift experiments.
Journal of molecular biology 2008;376(4):1034-47.
2007: Jonathan G Cannon; Charles F Anderson; M Thomas Record
Urea-amide preferential interactions in water: quantitative comparison of model compound data with biopolymer results using water accessible surface areas.
The journal of physical chemistry. B 2007;111(32):9675-85.
2007: Laurel M Pegram; M Thomas Record
Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface.
The journal of physical chemistry. B 2007;111(19):5411-7.
2007: Caroline Davis; Craig A Bingman; Robert Landick; M Thomas Record; Ruth M Saecker
Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(19):7833-8.
2007: Michael C Konopka; James C Weisshaar; M Thomas Record
Methods of changing biopolymer volume fraction and cytoplasmic solute concentrations for in vivo biophysical studies.
Methods in enzymology 2007;428():487-504.
2006: Ruth M Saecker; Caroline Davis; M Thomas Record
Do sigma factors need help with a meltdown?
Cell 2006;127(2):256-8.
2006: Laurel M Pegram; M Thomas Record
Partitioning of atmospherically relevant ions between bulk water and the water/vapor interface.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(39):14278-81.
2006: Michael C Konopka; Irina A Shkel; Scott Cayley; M Thomas Record; James C Weisshaar
Crowding and confinement effects on protein diffusion in vivo.
Journal of bacteriology 2006;188(17):6115-23.
2006: Irina A Shkel; Jeff D Ballin; M Thomas Record
Interactions of cationic ligands and proteins with small nucleic acids: analytic treatment of the large coulombic end effect on binding free energy as a function of salt concentration.
Biochemistry 2006;45(27):8411-26.
2006: Wayne S Kontur; Ruth M Saecker; Caroline Davis; Michael W Capp; M Thomas Record
Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subsequent conversion to RPo.
Biochemistry 2006;45(7):2161-77.
2005: Jiang Hong; Michael W Capp; Ruth M Saecker; M Thomas Record
Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding.
Biochemistry 2005;44(51):16896-911.
2005: Caroline Davis; Michael W Capp; M Thomas Record; Ruth M Saecker
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(2):285-90.
2004: Charles F Anderson; M Thomas Record
Gibbs-Duhem-based relationships among derivatives expressing the concentration dependences of selected chemical potentials for a multicomponent system.
Biophysical chemistry 2004;112(2-3):165-75.
2004: Jiang Hong; Michael W Capp; Charles F Anderson; Ruth M Saecker; Daniel J Felitsky; Melissa W Anderson; M Thomas Record
Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability.
Biochemistry 2004;43(46):14744-58.
2004: Daniel J Felitsky; Jonathan G Cannon; Michael W Capp; Jiang Hong; Adam W Van Wynsberghe; Charles F Anderson; M Thomas Record
The exclusion of glycine betaine from anionic biopolymer surface: why glycine betaine is an effective osmoprotectant but also a compatible solute.
Biochemistry 2004;43(46):14732-43.
2004: Scott Cayley; M Thomas Record
Large changes in cytoplasmic biopolymer concentration with osmolality indicate that macromolecular crowding may regulate protein-DNA interactions and growth rate in osmotically stressed Escherichia coli K-12.
Journal of molecular recognition : JMR 2004;17(5):488-96.
2004: Daniel J Felitsky; M Thomas Record
Application of the local-bulk partitioning and competitive binding models to interpret preferential interactions of glycine betaine and urea with protein surface.
Biochemistry 2004;43(28):9276-88.
2004: Irina A Shkel; M Thomas Record
Effect of the number of nucleic acid oligomer charges on the salt dependence of stability (DeltaG 37degrees) and melting temperature (Tm): NLPB analysis of experimental data.
Biochemistry 2004;43(22):7090-101.
2004: Jeff D Ballin; Irina A Shkel; M Thomas Record
Interactions of the KWK6 cationic peptide with short nucleic acid oligomers: demonstration of large Coulombic end effects on binding at 0.1-0.2 M salt.
Nucleic acids research 2004;32(11):3271-81.
2003: Scott Cayley; M Thomas Record
Roles of cytoplasmic osmolytes, water, and crowding in the response of Escherichia coli to osmotic stress: biophysical basis of osmoprotection by glycine betaine.
Biochemistry 2003;42(43):12596-609.
2003: Jiang Hong; Michael W Capp; Charles F Anderson; M Thomas Record
Preferential interactions in aqueous solutions of urea and KCl.
Biophysical chemistry 2003;105(2-3):517-32.
2003: Daniel J Felitsky; M Thomas Record
Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes.
Biochemistry 2003;42(7):2202-17.
2003: Ruth M Saecker; Oleg V Tsodikov; Michael W Capp; M Thomas Record
Rapid quench mixing to quantify kinetics of steps in association of Escherichia coli RNA polymerase with promoter DNA.
Methods in enzymology 2003;370():535-46.
2002: Charles F Anderson; Daniel J Felitsky; Jiang Hong; M Thomas Record
Generalized derivation of an exact relationship linking different coefficients that characterize thermodynamic effects of preferential interactions.
Biophysical chemistry 2002;101-102():497-511.
2002: Ruth M Saecker; Oleg V Tsodikov; Kristi L McQuade; Peter E Schlax; Michael W Capp; M Thomas Record
Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates.
Journal of molecular biology 2002;319(3):649-71.
2002: Ruth M Saecker; M Thomas Record
Protein surface salt bridges and paths for DNA wrapping.
Current opinion in structural biology 2002;12(3):311-9.
2002: Oleg V Tsodikov; M Thomas Record; Yuri V Sergeev
Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.
Journal of computational chemistry 2002;23(6):600-9.
2002: Irina A Shkel; Oleg V Tsodikov; M Thomas Record
Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):2597-602.
2001: Elizabeth S. Courtenay; Michael W Capp; M Thomas Record
Thermodynamics of interactions of urea and guanidinium salts with protein surface: relationship between solute effects on protein processes and changes in water-accessible surface area.
Protein science : a publication of the Protein Society 2001;10(12):2485-97.
2001: Oleg V Tsodikov; JA Holbrook; Irina A Shkel; M Thomas Record
Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer.
Biophysical journal 2001;81(4):1960-9.
2001: JA Holbrook; Oleg V Tsodikov; Ruth M Saecker; M Thomas Record
Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding.
Journal of molecular biology 2001;310(2):379-401.
2000: Elizabeth S. Courtenay; Michael W Capp; Charles F Anderson; M Thomas Record
Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro.
Biochemistry 2000;39(15):4455-71.
2000: D S Cayley; HJ Guttman; M Thomas Record
Biophysical characterization of changes in amounts and activity of Escherichia coli cell and compartment water and turgor pressure in response to osmotic stress.
Biophysical journal 2000;78(4):1748-64.
2000: Elizabeth S. Courtenay; Michael W Capp; Ruth M Saecker; M Thomas Record
Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential interaction coefficients and the local-bulk domain model.
Proteins 2000;Suppl 4():72-85.
1999: Oleg V Tsodikov; Ruth M Saecker; S E Melcher; M M Levandoski; D E Frank; Michael W Capp; M Thomas Record
Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping.
Journal of molecular biology 1999;294(3):639-55.
1999: JA Holbrook; Michael W Capp; Ruth M Saecker; M Thomas Record
Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices.
Biochemistry 1999;38(26):8409-22.
1999: Oleg V Tsodikov; M Thomas Record
General method of analysis of kinetic equations for multistep reversible mechanisms in the single-exponential regime: application to kinetics of open complex formation between Esigma70 RNA polymerase and lambdaP(R) promoter DNA.
Biophysical journal 1999;76(3):1320-9.
1999: W Zhang; Haihong Ni; Michael W Capp; Charles F Anderson; Timothy M Lohman; M Thomas Record
The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8+) binding to single-stranded DNA oligomers.
Biophysical journal 1999;76(2):1008-17.
1998: Oleg V Tsodikov; M L Craig; Ruth M Saecker; M Thomas Record
Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase.
Journal of molecular biology 1998;283(4):757-69.
1998: M L Craig; Oleg V Tsodikov; K L McQuade; P E Schlax; Michael W Capp; Ruth M Saecker; M Thomas Record
DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.
Journal of molecular biology 1998;283(4):741-56.
1998: M Thomas Record; Elizabeth S. Courtenay; Scott Cayley; HJ Guttman
Biophysical compensation mechanisms buffering E. coli protein-nucleic acid interactions against changing environments.
Trends in biochemical sciences 1998;23(5):190-4.
1998: M Thomas Record; Elizabeth S. Courtenay; D S Cayley; HJ Guttman
Responses of E. coli to osmotic stress: large changes in amounts of cytoplasmic solutes and water.
Trends in biochemical sciences 1998;23(4):143-8.
1998: M Thomas Record; W Zhang; Charles F Anderson
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.
Advances in protein chemistry 1998;51():281-353.
1997: S Padmanabhan; W Zhang; Michael W Capp; Charles F Anderson; M Thomas Record
Binding of cationic (+4) alanine- and glycine-containing oligopeptides to double-stranded DNA: thermodynamic analysis of effects of coulombic interactions and alpha-helix induction.
Biochemistry 1997;36(17):5193-206.
1997: D E Frank; Ruth M Saecker; J P Bond; Michael W Capp; Oleg V Tsodikov; S E Melcher; M M Levandoski; M Thomas Record
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.
Journal of molecular biology 1997;267(5):1186-206.
1996: W Zhang; Michael W Capp; J P Bond; Charles F Anderson; M Thomas Record
Thermodynamic characterization of interactions of native bovine serum albumin with highly excluded (glycine betaine) and moderately accumulated (urea) solutes by a novel application of vapor pressure osmometry.
Biochemistry 1996;35(32):10506-16.
1996: M M Levandoski; Oleg V Tsodikov; D E Frank; S E Melcher; Ruth M Saecker; M Thomas Record
Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping.
Journal of molecular biology 1996;260(5):697-717.
1996: Michael W Capp; D S Cayley; W Zhang; H J Guttman; S E Melcher; Ruth M Saecker; Charles F Anderson; M Thomas Record
Compensating effects of opposing changes in putrescine (2+) and K+ concentrations on lac repressor-lac operator binding: in vitro thermodynamic analysis and in vivo relevance.
Journal of molecular biology 1996;258(1):25-36.
1996: W Zhang; J P Bond; Charles F Anderson; T M Lohman; M Thomas Record
Large electrostatic differences in the binding thermodynamics of a cationic peptide to oligomeric and polymeric DNA.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(6):2511-6.
1995: M L Craig; W C Suh; M Thomas Record
HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site.
Biochemistry 1995;34(48):15624-32.
1995: YM Ayala; Alessandro Vindigni; M Nayal; R S Spolar; M Thomas Record; Enrico Di Cera
Thermodynamic investigation of hirudin binding to the slow and fast forms of thrombin: evidence for folding transitions in the inhibitor and protease coupled to binding.
Journal of molecular biology 1995;253(5):787-98.
1995: H J Guttman; Charles F Anderson; M Thomas Record
Analyses of thermodynamic data for concentrated hemoglobin solutions using scaled particle theory: implications for a simple two-state model of water in thermodynamic analyses of crowding in vitro and in vivo.
Biophysical journal 1995;68(3):835-46.
1995: M Thomas Record; Charles F Anderson
Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a two-domain model.
Biophysical journal 1995;68(3):786-94.
1995: V M Stein; J P Bond; Michael W Capp; Charles F Anderson; M Thomas Record
Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR.
Biophysical journal 1995;68(3):1063-72.
1995: M C Olmsted; J P Bond; Charles F Anderson; M Thomas Record
Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers.
Biophysical journal 1995;68(2):634-47.
1995: H J Guttman; S Cayley; M Li; Charles F Anderson; M Thomas Record
K(+)-ribosome interactions determine the large enhancements of 39K NMR transverse relaxation rates in the cytoplasm of Escherichia coli K-12.
Biochemistry 1995;34(4):1393-404.
1995: P J Schlax; Michael W Capp; M Thomas Record
Inhibition of transcription initiation by lac repressor.
Journal of molecular biology 1995;245(4):331-50.
1995: P E Schlax; Michael W Capp; M Thomas Record
Preparative-scale purification of DNA restriction fragments by continuous-flow gel electrophoresis.
BioTechniques 1995;18(1):94, 96, 98, 100.
1995: Charles F Anderson; M Thomas Record
Salt-nucleic acid interactions.
Annual review of physical chemistry 1995;46():657-700.
1994: J P Bond; Charles F Anderson; M Thomas Record
Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients.
Biophysical journal 1994;67(2):825-36.
1994: R S Spolar; M Thomas Record
Coupling of local folding to site-specific binding of proteins to DNA.
Science (New York, N.Y.) 1994;263(5148):777-84.
1994: L Rao; Wilma Ross; J A Appleman; Tamas Gaal; S Leirmo; P J Schlax; M Thomas Record; Richard L Gourse
Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength.
Journal of molecular biology 1994;235(5):1421-35.
1993: S M Law; G R Bellomy; P J Schlax; M Thomas Record
In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo.
Journal of molecular biology 1993;230(1):161-73.
1993: W C Suh; W Ross; M Thomas Record
Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site.
Science (New York, N.Y.) 1993;259(5093):358-61.
1992: J H Ha; M W Capp; M D Hohenwalter; M Baskerville; M Thomas Record
Thermodynamic stoichiometries of participation of water, cations and anions in specific and non-specific binding of lac repressor to DNA. Possible thermodynamic origins of the "glutamate effect" on protein-DNA interactions.
Journal of molecular biology 1992;228(1):252-64.
1992: W C Suh; S Leirmo; M Thomas Record
Roles of Mg2+ in the mechanism of formation and dissociation of open complexes between Escherichia coli RNA polymerase and the lambda PR promoter: kinetic evidence for a second open complex requiring Mg2+.
Biochemistry 1992;31(34):7815-25.
1992: Alicia J Dombroski; W A Walter; M Thomas Record; Deborah Siegele; Carol A Gross
Polypeptides containing highly conserved regions of transcription initiation factor sigma 70 exhibit specificity of binding to promoter DNA.
Cell 1992;70(3):501-12.
1992: R S Spolar; J R Livingstone; M Thomas Record
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water.
Biochemistry 1992;31(16):3947-55.
1992: S Cayley; Barbara A Lewis; M Thomas Record
Origins of the osmoprotective properties of betaine and proline in Escherichia coli K-12.
Journal of bacteriology 1992;174(5):1586-95.
1991: S Cayley; Barbara A Lewis; H J Guttman; M Thomas Record
Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.
Journal of molecular biology 1991;222(2):281-300.
1991: M C Olmsted; Charles F Anderson; M Thomas Record
Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: a grand canonical Monte Carlo analysis.
Biopolymers 1991;31(13):1593-604.
1991: S Padmanabhan; V M Brushaber; Charles F Anderson; M Thomas Record
Relative affinities of divalent polyamines and of their N-methylated analogues for helical DNA determined by 23Na NMR.
Biochemistry 1991;30(30):7550-9.
1991: J R Livingstone; R S Spolar; M Thomas Record
Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area.
Biochemistry 1991;30(17):4237-44.
1990: G R Bellomy; M Thomas Record
Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA.
Progress in nucleic acid research and molecular biology 1990;39():81-128.
1989: D W Cowing; J Mecsas; M Thomas Record; Carol A Gross
Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter.
Journal of molecular biology 1989;210(3):521-30.
1989: R S Spolar; J H Ha; M Thomas Record
Hydrophobic effect in protein folding and other noncovalent processes involving proteins.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(21):8382-5.
1989: J H Ha; R S Spolar; M Thomas Record
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes.
Journal of molecular biology 1989;209(4):801-16.
1989: M C Olmsted; Charles F Anderson; M Thomas Record
Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(20):7766-70.
1989: S Cayley; M Thomas Record; Barbara A Lewis
Accumulation of 3-(N-morpholino)propanesulfonate by osmotically stressed Escherichia coli K-12.
Journal of bacteriology 1989;171(7):3597-602.
1989: G R Bellomy; M Thomas Record
A method for horizontal polyacrylamide slab gel electrophoresis.
BioTechniques 1989;7(1):16, 19-21.
1988: S Padmanabhan; B Richey; Charles F Anderson; M Thomas Record
Interaction of an N-methylated polyamine analogue, hexamethonium(2+), with NaDNA: quantitative 14N and 23Na NMR relaxation rate studies of the cation-exchange process.
Biochemistry 1988;27(12):4367-76.
1988: G R Bellomy; M C Mossing; M Thomas Record
Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process.
Biochemistry 1988;27(11):3900-6.
1987: W H Braunlin; Charles F Anderson; M Thomas Record
Competitive interactions of Co(NH3)6(3+) and Na+ with helical B-DNA probed by 59Co and 23Na NMR.
Biochemistry 1987;26(24):7724-31.
1987: S Leirmo; C Harrison; D S Cayley; R R Burgess; M Thomas Record
Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro.
Biochemistry 1987;26(8):2095-101.
1986: M C Mossing; M Thomas Record
Upstream operators enhance repression of the lac promoter.
Science (New York, N.Y.) 1986;233(4766):889-92.
1986: W H Braunlin; Charles F Anderson; M Thomas Record
23Na-NMR investigations of counterion exchange reactions of helical DNA.
Biopolymers 1986;25(1):205-14.
1985: M C Mossing; M Thomas Record
Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites.
Journal of molecular biology 1985;186(2):295-305.
1982: W H Braunlin; T J Strick; M Thomas Record
Equilibrium dialysis studies of polyamine binding to DNA.
Biopolymers 1982;21(7):1301-14.
1980: D M Rose; M L Bleam; M Thomas Record; R G Bryant
Mg NMR in DNA solutions: Dominance of site binding effects.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(11):6289-92.
1980: M L Bleam; Charles F Anderson; M Thomas Record
Relative binding affinities of monovalent cations for double-stranded DNA.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(6):3085-9.