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Peter Reilly
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15
Ford, Clark
13
Coutinho, PM
8
Dowd, Michael
7
Laederach, Alain
6
Mulakala, Chandrika
6
Hill, Anthony
4
Sierks, Michael
3
Svensson, Birte
3
Nerinckx, Wim
3
Fang, Tsuei-Yun
3
Liu, HL
2
Honzatko, Richard
2
Allen, Martin
2
French, Alfred
2
Rasmussen, Mark
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All Publications
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2009: Johnson Glenn P; Petersen Luis; French Alfred D; Reilly Peter J
Twisting of glycosidic bonds by hydrolases.
Carbohydrate research 2009;344(16):2157-66.
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2009: Mertz Blake; Gu Xun; Reilly Peter J
Analysis of functional divergence within two structurally related glycoside hydrolase families.
Biopolymers 2009;91(6):478-95.
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2009: Petersen Luis; Ardèvol Albert; Rovira Carme; Reilly Peter J
Mechanism of cellulose hydrolysis by inverting GH8 endoglucanases: a QM/MM metadynamics study.
The journal of physical chemistry. B 2009;113(20):7331-9.
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2008: Hill Anthony D; Reilly Peter J
Computational analysis of glycoside hydrolase family 1 specificities.
Biopolymers 2008;89(11):1021-31.
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2008: Cantú David; Nerinckx Wim; Reilly Peter J
Theory and computation show that Asp463 is the catalytic proton donor in human endoplasmic reticulum alpha-(1-->2)-mannosidase I.
Carbohydrate research 2008;343(13):2235-42.
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2008: Hill Anthony D; Reilly Peter J
A Gibbs free energy correlation for automated docking of carbohydrates.
Journal of computational chemistry 2008;29(7):1131-41.
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2007: Mertz Blake; Hill Anthony D; Mulakala Chandrika; Reilly Peter J
Automated docking to explore subsite binding by glycoside hydrolase family 6 cellobiohydrolases and endoglucanases.
Biopolymers 2007;87(4):249-60.
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2007: Trabue Steven; Scoggin Kenwood; Tjandrakusuma Siska; Rasmussen Mark A; Reilly Peter J
Ruminal fermentation of propylene glycol and glycerol.
Journal of agricultural and food chemistry 2007;55(17):7043-51.
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2007: Hill Anthony D; Reilly Peter J
Puckering coordinates of monocyclic rings by triangular decomposition.
Journal of chemical information and modeling 2007;47(3):1031-5.
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2007: Mulakala Chandrika; Nerinckx Wim; Reilly Peter J
The fate of beta-D-mannopyranose after its formation by endoplasmic reticulum alpha-(1-->2)-mannosidase I catalysis.
Carbohydrate research 2007;342(2):163-9.
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2006: Mulakala Chandrika; Nerinckx Wim; Reilly Peter J
Docking studies on glycoside hydrolase Family 47 endoplasmic reticulum alpha-(1-->2)-mannosidase I to elucidate the pathway to the substrate transition state.
Carbohydrate research 2006;341(13):2233-45.
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2006: Hill Anthony D; Reilly Peter J
Comparing programs for rigid-body multiple structural superposition of proteins.
Proteins 2006;64(1):219-26.
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2006: Glatz Charles E; Gonzalez Ramon; Huba Mary E; Mallapragada Surya K; Narasimhan Balaji; Reilly Peter J; Saunders Kevin P; Shanks Jacqueline V
Problem-based learning biotechnology courses in chemical engineering.
Biotechnology progress 2006;22(1):173-8.
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2005: Mulakala Chandrika; Reilly Peter J
Force calculations in automated docking: enzyme-substrate interactions in Fusarium oxysporum Cel7B.
Proteins 2005;61(3):590-6.
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2005: Mertz Blake; Kuczenski Robert S; Larsen Robert T; Hill Anthony D; Reilly Peter J
Phylogenetic analysis of family 6 glycoside hydrolases.
Biopolymers 2005;79(4):197-206.
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2005: Mulakala Chandrika; Reilly Peter J
Hypocrea jecorina (Trichoderma reesei) Cel7A as a molecular machine: A docking study.
Proteins 2005;60(4):598-605.
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2005: Laederach Alain; Reilly Peter J
Modeling protein recognition of carbohydrates.
Proteins 2005;60(4):591-7.
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2004: Aikens Christopher L; Laederach Alain; Reilly Peter J
Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking.
Proteins 2004;57(1):27-35.
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2004: Allen Martin J; Laederach Alain; Reilly Peter J; Mason Robert J; Voelker Dennis R
Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylglucosamine ligands.
Glycobiology 2004;14(8):693-700.
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2003: Laederach Alain; Reilly Peter J
Specific empirical free energy function for automated docking of carbohydrates to proteins.
Journal of computational chemistry 2003;24(14):1748-57.
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2003: Cornett Catherine A G; Fang Tsuei-Yun; Reilly Peter J; Ford Clark
Starch-binding domain shuffling in Aspergillus niger glucoamylase.
Protein engineering 2003;16(7):521-9.
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2003: Aleshin Alexander E; Feng Ping-Hua; Honzatko Richard B; Reilly Peter J
Crystal structure and evolution of a prokaryotic glucoamylase.
Journal of molecular biology 2003;327(1):61-73.
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2002: Mulakala Chandrika; Reilly Peter J
Understanding protein structure-function relationships in Family 47 alpha-1,2-mannosidases through computational docking of ligands.
Proteins 2002;49(1):125-34.
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2002: Schneider Ian C; Ames Michael L; Rasmussen Mark A; Reilly Peter J
Fermentation of cottonseed and other feedstuffs in cattle rumen fluid.
Journal of agricultural and food chemistry 2002;50(8):2267-73.
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2001: Rockey W M; Dowd M K; Reilly P J; French A D
Modeling of deoxy- and dideoxyaldohexopyranosyl ring puckering with MM3(92).
Carbohydrate research 2001;335(4):261-73.
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2001: Allen M J; Laederach A; Reilly P J; Mason R J
Polysaccharide recognition by surfactant protein D: novel interactions of a C-type lectin with nonterminal glucosyl residues.
Biochemistry 2001;40(26):7789-98.
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2000: Liu H L; Doleyres Y; Coutinho P M; Ford C; Reilly P J
Replacement and deletion mutations in the catalytic domain and belt region of Aspergillus awamori glucoamylase to enhance thermostability.
Protein engineering 2000;13(9):655-9.
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2000: Rockey W M; Laederach A; Reilly P J
Automated docking of alpha-(1-->4)- and alpha-(1-->6)-linked glucosyl trisaccharides and maltopentaose into the soybean beta-amylase active site.
Proteins 2000;40(2):299-309.
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2000: Fan Z; Oguntimein G B; Reilly P J
Characterization of kinetics and thermostability of Acremonium strictum glucooligosaccharide oxidase.
Biotechnology and bioengineering 2000;68(2):231-7.
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1999: Laederach A; Dowd M K; Coutinho P M; Reilly P J
Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean beta-amylase active site.
Proteins 1999;37(2):166-75.
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1999: Liu H L; Ford C; Reilly P J
Mutations to alter Aspergillus awamori glucoamylase selectivity. IV. Combinations of Asn20-->Cys/Ala27-->Cys, Ser30-->Pro, Gly137-->Ala, 311-4 loop, Ser411-->Ala and Ser436-->Pro.
Protein engineering 1999;12(2):163-72.
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1998: Liu H L; Coutinho P M; Ford C; Reilly P J
Mutations to alter Aspergillus awamori glucoamylase selectivity. III. Asn20-->Cys/Ala27-->Cys, Ala27-->Pro, Ser30-->Pro, Lys108-->Arg, Lys108-->Met, Gly137-->Ala, 311-314 Loop, Tyr312-->Trp and Ser436-->Pro.
Protein engineering 1998;11(5):389-98.
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1998: Fang T Y; Honzatko R B; Reilly P J; Ford C
Mutations to alter Aspergillus awamori glucoamylase selectivity. II. Mutation of residues 119 and 121.
Protein engineering 1998;11(2):127-33.
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1998: Fang T Y; Coutinho P M; Reilly P J; Ford C
Mutations to alter Aspergillus awamori glucoamylase selectivity. I. Tyr48Phe49-->Trp, Tyr116-->Trp, Tyr175-->Phe, Arg241-->Lys, Ser411-->Ala and Ser411-->Gly.
Protein engineering 1998;11(2):119-26.
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1997: Coutinho P M; Reilly P J
Glucoamylase structural, functional, and evolutionary relationships.
Proteins 1997;29(3):334-47.
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1997: Pestlin S; Prinz D; Starr J N; Reilly P J
Kinetics and equilibria of condensation reactions between monosaccharide pairs catalyzed by Aspergillus niger glucoamylase.
Biotechnology and bioengineering 1997;56(1):9-22.
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1997: Li Y; Reilly P J; Ford C
Effect of introducing proline residues on the stability of Aspergillus awamori.
Protein engineering 1997;10(10):1199-204.
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1997: Coutinho P M; Dowd M K; Reilly P J
Automated docking of glucosyl disaccharides in the glucoamylase active site.
Proteins 1997;28(2):162-73.
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1997: Coutinho P M; Dowd M K; Reilly P J
Automated docking of monosaccharide substrates and analogues and methyl alpha-acarviosinide in the glucoamylase active site.
Proteins 1997;27(2):235-48.
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1996: Coutinho P M; Dowd M K; Reilly P J
Automated docking of glucoamylase substrates and inhibitors.
Annals of the New York Academy of Sciences 1996;799():164-71.
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1996: Chen H M; Li Y; Panda T; Buehler F U; Ford C; Reilly P J
Effect of replacing helical glycine residues with alanines on reversible and irreversible stability and production of Aspergillus awamori glucoamylase.
Protein engineering 1996;9(6):499-505.
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1995: Chen H M; Ford C; Reilly P J
Identification and elimination by site-directed mutagenesis of thermolabile aspartyl bonds in Aspergillus awamori glucoamylase.
Protein engineering 1995;8(6):575-82.
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1994: Henrissat B; Coutinho P M; Reilly P J
Reading-frame shift in Saccharomyces glucoamylases restores catalytic base, extends sequence and improves alignment with other glucoamylases.
Protein engineering 1994;7(11):1281-2.
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1994: Flory N; Gorman M; Coutinho P M; Ford C; Reilly P J
Thermosensitive mutants of Aspergillus awamori glucoamylase by random mutagenesis: inactivation kinetics and structural interpretation.
Protein engineering 1994;7(8):1005-12.
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1994: Chen H M; Ford C; Reilly P J
Substitution of asparagine residues in Aspergillus awamori glucoamylase by site-directed mutagenesis to eliminate N-glycosylation and inactivation by deamidation.
The Biochemical journal 1994;301 ( Pt 1)():275-81.
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1994: Coutinho P M; Reilly P J
Structural similarities in glucoamylase by hydrophobic cluster analysis.
Protein engineering 1994;7(6):749-60.
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1994: Dowd M K; Reilly P J; French A D
Relaxed-residue conformational mapping of the three linkage bonds of isomaltose and gentiobiose with MM3 (92).
Biopolymers 1994;34(5):625-38.
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1994: Coutinho P M; Reilly P J
Structure-function relationships in the catalytic and starch binding domains of glucoamylase.
Protein engineering 1994;7(3):393-400.
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1993: Bakir U; Coutinho P M; Sullivan P A; Ford C; Reilly P J
Cassette mutagenesis of Aspergillus awamori glucoamylase near its general acid residue to probe its catalytic and pH properties.
Protein engineering 1993;6(8):939-46.
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1993: Sierks M R; Ford C; Reilly P J; Svensson B
Functional roles and subsite locations of Leu177, Trp178 and Asn182 of Aspergillus awamori glucoamylase determined by site-directed mutagenesis.
Protein engineering 1993;6(1):75-9.
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1992: Dowd M K; French A D; Reilly P J
Conformational analysis of the anomeric forms of sophorose, laminarabiose, and cellobiose using MM3.
Carbohydrate research 1992;233():15-34.
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1992: Dowd M K; Zeng J; French A D; Reilly P J
Conformational analysis of the anomeric forms of kojibiose, nigerose, and maltose using MM3.
Carbohydrate research 1992;230(2):223-44.
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1990: Summerfelt S T; Selosse E J; Reilly P J; Trahanovsky W S
1H-nuclear magnetic resonance spectroscopy of reducing-residue anomeric protons of pertrifluoroacetylated carbohydrates.
Carbohydrate research 1990;203(2):163-72.
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1990: Sierks M R; Ford C; Reilly P J; Svensson B
Catalytic mechanism of fungal glucoamylase as defined by mutagenesis of Asp176, Glu179 and Glu180 in the enzyme from Aspergillus awamori.
Protein engineering 1990;3(3):193-8.
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1989: Sierks M R; Ford C; Reilly P J; Svensson B
Site-directed mutagenesis at the active site Trp120 of Aspergillus awamori glucoamylase.
Protein engineering 1989;2(8):621-5.
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1989: Tao B Y; Reilly P J; Robyt J F
Detection of a covalent intermediate in the mechanism of action of porcine pancreatic alpha-amylase by using 13C nuclear magnetic resonance.
Biochimica et biophysica acta 1989;995(3):214-20.
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1988: Tao B Y; Reilly P J; Robyt J F
Neisseria perflava amylosucrase: characterization of its product polysaccharide and a study of its inhibition by sucrose derivatives.
Carbohydrate research 1988;181():163-74.
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1988: Meagher M M; Tao B Y; Chow J M; Reilly P J
Kinetics and subsite mapping of a D-xylobiose- and D-xylose-producing Aspergillus niger endo-(1----4)-beta-D-xylanase.
Carbohydrate research 1988;173(2):273-83.
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1985: Sierks M R; Reilly P J
Application of cross-linked carboxymethyl cellulose degradation by beta-glucosidase and vaginal microbes to toxic shock syndrome.
Applied and environmental microbiology 1985;50(3):634-7.
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