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Cathy Riemer

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TOP 3
Belinda Giardine; Aakrosh Ratan; Cathy Riemer; Richard Burhans; Webb Miller
Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.
Giltae Song; Louxin Zhang; Yu Zhang; Cathy Riemer; Benjamin Dickins; Eric D Green; Ross C Hardison; Chih-Hao Hsu; Hie Lim Kim; Webb Miller
Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.
Giltae Song; Louxin Zhang; Yu Zhang; Cathy Riemer; Eric D Green; Ross C Hardison; Federico Hoffmann; Chih-Hao Hsu; Hie Lim Kim; Webb Miller
Conversion events in gene clusters.

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All Publications

2012: Belinda Giardine; Aakrosh Ratan; Cathy Riemer; Richard Burhans; Webb Miller
Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2012;Chapter 15():Unit15.2.
2012: Giltae Song; Louxin Zhang; Yu Zhang; Cathy Riemer; Benjamin Dickins; Eric D Green; Ross C Hardison; Chih-Hao Hsu; Hie Lim Kim; Webb Miller
Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.
Genome biology and evolution 2012;4(4):586-601.
2011: Giltae Song; Louxin Zhang; Yu Zhang; Cathy Riemer; Eric D Green; Ross C Hardison; Federico Hoffmann; Chih-Hao Hsu; Hie Lim Kim; Webb Miller
Conversion events in gene clusters.
BMC evolutionary biology 2011;11():226.
2011: Giltae Song; Chih-Hao Hsu; Cathy Riemer; Webb Miller
Evaluation of methods for detecting conversion events in gene clusters.
BMC bioinformatics 2011;12 Suppl 1():S45.
2010: Laura Elnitski; Richard Burhans; Cathy Riemer; Ross Hardison; Webb Miller
MultiPipMaker: a comparative alignment server for multiple DNA sequences.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2010;Chapter 10():Unit10.4.
2007: Belinda Giardine; Cathy Riemer; Tim Hefferon; Daryl Thomas; Fan Hsu; Julian Zielenski; Yunhua Sang; Laura Elnitski; Garry R Cutting; Heather Trumbower; Andrew Kern; Robert Kuhn; George P Patrinos; Jim Hughes; Doug Higgs; David Chui; Charles R Scriver; Manyphong Phommarinh; Santosh K Patnaik; Olga O Blumenfeld; Bruce Gottlieb; Mauno Vihinen; Jouni Väliaho; W James Kent; Webb Miller; Ross C Hardison
PhenCode: connecting ENCODE data with mutations and phenotype.
Human mutation 2007;28(6):554-62.
2007: Belinda Giardine; Sjozef van Baal; Polynikis Kaimakis; Cathy Riemer; Webb Miller; Maria Samara; Panagoula Kollia; Nicholas P Anagnou; David H K Chui; Henri Wajcman; Ross C Hardison; George P Patrinos
HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update.
Human mutation 2007;28(2):206.
2005: Belinda Giardine; Cathy Riemer; Ross C Hardison; Richard Burhans; Laura Elnitski; Prachi Shah; Yi Zhang; Daniel Blankenberg; Istvan Albert; James TAYLOR; Webb Miller; W James Kent; Anton Nekrutenko
Galaxy: a platform for interactive large-scale genome analysis.
Genome research 2005;15(10):1451-5.
2005: Laura Elnitski; Cathy Riemer; Richard Burhans; Ross Hardison; Webb Miller
MultiPipMaker: comparative alignment server for multiple DNA sequences.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2005;Chapter 10():Unit10.4.
2005: Laura Elnitski; Belinda Giardine; Prachi Shah; Yi Zhang; Cathy Riemer; Matthew Weirauch; Richard Burhans; Webb Miller; Ross C Hardison
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.
Nucleic acids research 2005;33(Database issue):D466-70.
2004: Mathieu Blanchette; W James Kent; Cathy Riemer; Laura Elnitski; Arian F A Smit; Krishna M Roskin; Robert Baertsch; Kate Rosenbloom; Hiram Clawson; Eric Green; David Haussler; Webb Miller
Aligning multiple genomic sequences with the threaded blockset aligner.
Genome research 2004;14(4):708-15.
2004: George P Patrinos; Belinda Giardine; Cathy Riemer; Webb Miller; David H K Chui; Nicholas P Anagnou; Henri Wajcman; Ross C Hardison
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.
Nucleic acids research 2004;32(Database issue):D537-41.
2003: Liliana Florea; Michael McClelland; Cathy Riemer; Scott Schwartz; Webb Miller
EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.
Nucleic acids research 2003;31(13):3527-32.
2003: Scott Schwartz; Laura Elnitski; Mei Li; Matt Weirauch; Cathy Riemer; Arian Smit; Eric Green; Ross C Hardison; Webb Miller
MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences.
Nucleic acids research 2003;31(13):3518-24.
2003: Belinda Giardine; Laura Elnitski; Cathy Riemer; Izabela Makalowska; Scott Schwartz; Webb Miller; Ross C Hardison
GALA, a database for genomic sequence alignments and annotations.
Genome research 2003;13(4):732-41.
2003: Laura Elnitski; Cathy Riemer; Scott Schwartz; Ross Hardison; Webb Miller
PipMaker: a World Wide Web server for genomic sequence alignments.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2003;Chapter 10():Unit 10.2.
2003: Ross C Hardison; Francesca Chiaromonte; Diana Kolbe; H Wang; Hanna Petrykowska; Laura Elnitski; Shan Yang; Belinda Giardine; Yi Zhang; Cathy Riemer; Scott Schwartz; David Haussler; Krishna M Roskin; RJ Weber; Mark Diekhans; W James Kent; Mitchell J Weiss; john welch; Webb Miller
Global predictions and tests of erythroid regulatory regions.
Cold Spring Harbor symposia on quantitative biology 2003;68():335-44.
2002: Laura Elnitski; Cathy Riemer; Hanna Petrykowska; Liliana Florea; Scott Schwartz; Webb Miller; Ross C Hardison
PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.
Genomics 2002;80(6):681-90.
2002: Ross C Hardison; David H K Chui; Belinda Giardine; Cathy Riemer; George P Patrinos; Nicholas P Anagnou; Webb Miller; Henri Wajcman
HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.
Human mutation 2002;19(3):225-33.
2001: Ross C Hardison; David H K Chui; Cathy Riemer; Belinda Giardine; H Lehväslaiho; Henri Wajcman; Webb Miller
Databases of human hemoglobin variants and other resources at the globin gene server.
Hemoglobin 2001;25(2):183-93.
2000: Liliana Florea; Cathy Riemer; Scott Schwartz; Zhaolei Zhang; Nikola Stojanovic; Webb Miller; Michael McClelland
Web-based visualization tools for bacterial genome alignments.
Nucleic acids research 2000;28(18):3486-96.
2000: Scott Schwartz; Zhaolei Zhang; K A Frazer; Arian Smit; Cathy Riemer; John Bouck; Richard Gibbs; Ross C Hardison; Webb Miller
PipMaker--a web server for aligning two genomic DNA sequences.
Genome research 2000;10(4):577-86.
1999: Nikola Stojanovic; Liliana Florea; Cathy Riemer; Deborah L Gumucio; Jerry L Slightom; Morris Goodman; Webb Miller; Ross C Hardison
Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions.
Nucleic acids research 1999;27(19):3899-910.
1998: Cathy Riemer; A ElSherbini; Nikola Stojanovic; Scott Schwartz; P B Kwitkin; Webb Miller; Ross C Hardison
A database of experimental results on globin gene expression.
Genomics 1998;53(3):325-37.
1998: David H K Chui; Ross C Hardison; Cathy Riemer; Webb Miller; Melinda Carver; TP Molchanova; Georgi D Efremov; T H Huisman
An electronic database of human hemoglobin variants on the World Wide Web.
Blood 1998;91(8):2643-4.
1998: Ross C Hardison; David H K Chui; Cathy Riemer; Webb Miller; Melinda Carver; TP Molchanova; Georgi D Efremov; TH Huisman
Access to a syllabus of human hemoglobin variants (1996) via the World Wide Web.
Hemoglobin 1998;22(2):113-27.
1998: Ross C Hardison; Cathy Riemer; David H K Chui; TH Huisman; Webb Miller
Electronic access to sequence alignments, experimental results, and human mutations as an aid to studying globin gene regulation.
Genomics 1998;47(3):429-37.