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Donald Rio

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J Matthew Taliaferro; Julie L Aspden; Marco Blanchette; Todd Bradley; Dhruv Marwha; Donald C Rio
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.
Sharmistha Majumdar; Anita Singh; Donald C Rio
The human THAP9 gene encodes an active P-element DNA transposase.
J Matthew Taliaferro; Julie L Aspden; Nathalie E Cheng; Lori A Kohlstaedt; Dhruv Marwha; Daniela Mavrici; Donald C Rio
The Drosophila splicing factor PSI is phosphorylated by casein kinase II and tousled-like kinase.

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All Publications

2013: J Matthew Taliaferro; Julie L Aspden; Marco Blanchette; Todd Bradley; Dhruv Marwha; Donald C Rio
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.
Genes & development 2013;27(4):378-89.
2013: Sharmistha Majumdar; Anita Singh; Donald C Rio
The human THAP9 gene encodes an active P-element DNA transposase.
Science (New York, N.Y.) 2013;339(6118):446-8.
2013: J Matthew Taliaferro; Julie L Aspden; Nathalie E Cheng; Lori A Kohlstaedt; Dhruv Marwha; Daniela Mavrici; Donald C Rio
The Drosophila splicing factor PSI is phosphorylated by casein kinase II and tousled-like kinase.
PloS one 2013;8(2):e56401.
2011: J Matthew Taliaferro; Nehemiah Alvarez; Richard E Green; Marco Blanchette; Donald C Rio
Evolution of a tissue-specific splicing network.
Genes & development 2011;25(6):608-20.
2011: Alexander W Pastuszak; marcin joachimiak; Marco Blanchette; Donald C Rio; Steven E Brenner; Alan D Frankel
An SF1 affinity model to identify branch point sequences in human introns.
Nucleic acids research 2011;39(6):2344-56.
2010: Alex Sabogal; Donald C Rio
A green fluorescent protein solubility screen in E. coli reveals domain boundaries of the GTP-binding domain in the P element transposase.
Protein science : a publication of the Protein Society 2010;19(11):2210-8.
2010: Eun Joo Song; Shannon L Werner; Jakob Neubauer; Frank Stegmeier; Julie Aspden; Donald C Rio; J Wade Harper; Stephen J Elledge; Marc W Kirschner; Michael Rape
The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome.
Genes & development 2010;24(13):1434-47.
2010: Alex Sabogal; Artem Y Lyubimov; Jacob E Corn; James M Berger; Donald C Rio
THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.
Nature structural & molecular biology 2010;17(1):117-23.
2009: Kasper Daniel Hansen; Liana F Lareau; Marco Blanchette; Richard E Green; Qi Meng; Jan Rehwinkel; Fabian L Gallusser; Elisa Izaurralde; Donald C Rio; Sandrine Dudoit; Steven E Brenner
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila.
PLoS genetics 2009;5(6):e1000525.
2009: Marco Blanchette; Richard E Green; Stewart MacArthur; Angela N Brooks; Steven E Brenner; Michael B Eisen; Donald C Rio
Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members.
Molecular cell 2009;33(4):438-49.
2008: Shalini Sharma; Lori A Kohlstaedt; Andrey Damianov; Donald C Rio; Douglas L Black
Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome.
Nature structural & molecular biology 2008;15(2):183-91.
2007: Shirley H Huang; Donald C Rio; Michael A Marletta
Ligand binding and inhibition of an oxygen-sensitive soluble guanylate cyclase, Gyc-88E, from Drosophila.
Biochemistry 2007;46(51):15115-22.
2007: Mei Tang; Ciro Cecconi; Carlos Bustamante; Donald C Rio
Analysis of P element transposase protein-DNA interactions during the early stages of transposition.
The Journal of biological chemistry 2007;282(39):29002-12.
2007: Brian T Weinert; Donald C Rio
DNA strand displacement, strand annealing and strand swapping by the Drosophila Bloom's syndrome helicase.
Nucleic acids research 2007;35(4):1367-76.
2006: Nikolas H Chmiel; Donald C Rio; Jennifer A Doudna
Distinct contributions of KH domains to substrate binding affinity of Drosophila P-element somatic inhibitor protein.
RNA (New York, N.Y.) 2006;12(2):283-91.
2005: Dirk Remus; Marco Blanchette; Donald C Rio; Michael R Botchan
CDK phosphorylation inhibits the DNA-binding and ATP-hydrolysis activities of the Drosophila origin recognition complex.
The Journal of biological chemistry 2005;280(48):39740-51.
2005: Li Chen; Dennis J Lullo; Enbo Ma; Susan E Celniker; Donald C Rio; Jennifer A Doudna
Identification and analysis of U5 snRNA variants in Drosophila.
RNA (New York, N.Y.) 2005;11(10):1473-7.
2005: Mei Tang; Ciro Cecconi; Helen Kim; Carlos Bustamante; Donald C Rio
Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes.
Genes & development 2005;19(12):1422-5.
2005: Marco Blanchette; Richard E Green; Steven E Brenner; Donald C Rio
Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila.
Genes & development 2005;19(11):1306-14.
2005: Brian T Weinert; Bosun Min; Donald C Rio
P element excision and repair by non-homologous end joining occurs in both G1 and G2 of the cell cycle.
DNA repair 2005;4(2):171-81.
2004: Li Chen; Donald C Rio; Gabriel G Haddad; Enbo Ma
Regulatory role of dADAR in ROS metabolism in Drosophila CNS.
Brain research. Molecular brain research 2004;131(1-2):93-100.
2004: Marco Blanchette; Emmanuel Labourier; Richard E Green; Steven E Brenner; Donald C Rio
Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.
Molecular cell 2004;14(6):775-86.
2004: Bosun Min; Brian T Weinert; Donald C Rio
Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(24):8906-11.
2004: Michael H Brodsky; Brian T Weinert; Garson Tsang; Yikang S Rong; Nadine McGinnis; Kent G Golic; Donald C Rio; Gerald M Rubin
Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage.
Molecular and cellular biology 2004;24(3):1219-31.
2003: Richard E Green; Benjamin P Lewis; R Tyler Hillman; Marco Blanchette; Liana F Lareau; Aaron T Garnett; Donald C Rio; Steven E Brenner
Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i118-21.
2002: Eileen L Beall; Matthew B Mahoney; Donald C Rio
Identification and analysis of a hyperactive mutant form of Drosophila P-element transposase.
Genetics 2002;162(1):217-27.
2002: Donald C Rio
Half-pint: alternative splicing in the Drosophila ovary.
Molecular cell 2002;9(3):456-7.
2002: Emmanuel Labourier; Marco Blanchette; Jennie W Feiger; Melissa D Adams; Donald C Rio
The KH-type RNA-binding protein PSI is required for Drosophila viability, male fertility, and cellular mRNA processing.
Genes & development 2002;16(1):72-84.
2001: AK Amarasinghe; R MacDiarmid; Melissa D Adams; Donald C Rio
An in vitro-selected RNA-binding site for the KH domain protein PSI acts as a splicing inhibitor element.
RNA (New York, N.Y.) 2001;7(9):1239-53.
2001: Emmanuel Labourier; Melissa D Adams; Donald C Rio
Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein.
Molecular cell 2001;8(2):363-73.
2001: Emmanuel Labourier; Donald C Rio
Purification of Drosophila snRNPs and characterization of two populations of functional U1 particles.
RNA (New York, N.Y.) 2001;7(3):457-70.
1999: Donald C Rio
Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila polycomb group gene, Enhancer of zeste.
Genetics 1999;153(1):507.
1999: Scott M Crowder; R Kanaar; Donald C Rio; Thomas Alber
Absence of interdomain contacts in the crystal structure of the RNA recognition motifs of Sex-lethal.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(9):4892-7.
1998: S Roche; Donald C Rio
Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila Polycomb group gene, Enhancer of zeste.
Genetics 1998;149(4):1839-55.
1998: C C Lee; Eileen L Beall; Donald C Rio
DNA binding by the KP repressor protein inhibits P-element transposase activity in vitro.
The EMBO journal 1998;17(14):4166-74.
1998: DZ Rudner; KS Breger; R Kanaar; Melissa D Adams; Donald C Rio
RNA binding activity of heterodimeric splicing factor U2AF: at least one RS domain is required for high-affinity binding.
Molecular and cellular biology 1998;18(7):4004-11.
1998: DZ Rudner; KS Breger; Donald C Rio
Molecular genetic analysis of the heterodimeric splicing factor U2AF: the RS domain on either the large or small Drosophila subunit is dispensable in vivo.
Genes & development 1998;12(7):1010-21.
1998: DZ Rudner; R Kanaar; KS Breger; Donald C Rio
Interaction between subunits of heterodimeric splicing factor U2AF is essential in vivo.
Molecular and cellular biology 1998;18(4):1765-73.
1998: Eileen L Beall; Donald C Rio
Transposase makes critical contacts with, and is stimulated by, single-stranded DNA at the P element termini in vitro.
The EMBO journal 1998;17(7):2122-36.
1997: L E Hammond; DZ Rudner; R Kanaar; Donald C Rio
Mutations in the hrp48 gene, which encodes a Drosophila heterogeneous nuclear ribonucleoprotein particle protein, cause lethality and developmental defects and affect P-element third-intron splicing in vivo.
Molecular and cellular biology 1997;17(12):7260-7.
1997: Andrew L Lee; B F Volkman; S A Robertson; DZ Rudner; D A Barbash; Thomas W Cline; R Kanaar; Donald C Rio; David E Wemmer
Chemical shift mapping of the RNA-binding interface of the multiple-RBD protein sex-lethal.
Biochemistry 1997;36(47):14306-17.
1997: Eileen L Beall; Donald C Rio
Drosophila P-element transposase is a novel site-specific endonuclease.
Genes & development 1997;11(16):2137-51.
1997: Y M Mul; Donald C Rio
Reprogramming the purine nucleotide cofactor requirement of Drosophila P element transposase in vivo.
The EMBO journal 1997;16(14):4441-7.
1997: G Barnes; Donald C Rio
DNA double-strand-break sensitivity, DNA replication, and cell cycle arrest phenotypes of Ku-deficient Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(3):867-72.
1997: Melissa D Adams; R S Tarng; Donald C Rio
The alternative splicing factor PSI regulates P-element third intron splicing in vivo.
Genes & development 1997;11(1):129-38.
1996: C C Lee; Y M Mul; Donald C Rio
The Drosophila P-element KP repressor protein dimerizes and interacts with multiple sites on P-element DNA.
Molecular and cellular biology 1996;16(10):5616-22.
1996: DZ Rudner; R Kanaar; K S Breger; Donald C Rio
Mutations in the small subunit of the Drosophila U2AF splicing factor cause lethality and developmental defects.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(19):10333-7.
1996: Melissa D Adams; DZ Rudner; Donald C Rio
Biochemistry and regulation of pre-mRNA splicing.
Current opinion in cell biology 1996;8(3):331-9.
1996: Eileen L Beall; Donald C Rio
Drosophila IRBP/Ku p70 corresponds to the mutagen-sensitive mus309 gene and is involved in P-element excision in vivo.
Genes & development 1996;10(8):921-33.
1995: R Kanaar; Andrew L Lee; DZ Rudner; David E Wemmer; Donald C Rio
Interaction of the sex-lethal RNA binding domains with RNA.
The EMBO journal 1995;14(18):4530-9.
1995: S Roche; M Schiff; Donald C Rio
P-element repressor autoregulation involves germ-line transcriptional repression and reduction of third intron splicing.
Genes & development 1995;9(10):1278-88.
1995: C W Siebel; A Admon; Donald C Rio
Soma-specific expression and cloning of PSI, a negative regulator of P element pre-mRNA splicing.
Genes & development 1995;9(3):269-83.
1994: Eileen L Beall; A Admon; Donald C Rio
A Drosophila protein homologous to the human p70 Ku autoimmune antigen interacts with the P transposable element inverted repeats.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(26):12681-5.
1994: Andrew L Lee; R Kanaar; Donald C Rio; David E Wemmer
Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance.
Biochemistry 1994;33(46):13775-86.
1994: C W Siebel; R Kanaar; Donald C Rio
Regulation of tissue-specific P-element pre-mRNA splicing requires the RNA-binding protein PSI.
Genes & development 1994;8(14):1713-25.
1993: S Misra; R M Buratowski; T Ohkawa; Donald C Rio
Cytotype control of Drosophila melanogaster P element transposition: genomic position determines maternal repression.
Genetics 1993;135(3):785-800.
1993: R Kanaar; S Roche; Eileen L Beall; M R Green; Donald C Rio
The conserved pre-mRNA splicing factor U2AF from Drosophila: requirement for viability.
Science (New York, N.Y.) 1993;262(5133):569-73.
1993: Donald C Rio
Splicing of pre-mRNA: mechanism, regulation and role in development.
Current opinion in genetics & development 1993;3(4):574-84.
1992: C W Siebel; L D Fresco; Donald C Rio
The mechanism of somatic inhibition of Drosophila P-element pre-mRNA splicing: multiprotein complexes at an exon pseudo-5' splice site control U1 snRNP binding.
Genes & development 1992;6(8):1386-401.
1992: Donald C Rio
RNA processing.
Current opinion in cell biology 1992;4(3):444-52.
1992: P D Kaufman; Donald C Rio
P element transposition in vitro proceeds by a cut-and-paste mechanism and uses GTP as a cofactor.
Cell 1992;69(1):27-39.
1992: Donald C Rio
RNA binding proteins, splice site selection, and alternative pre-mRNA splicing.
Gene expression 1992;2(1):1-5.
1991: Alan D Frankel; I W Mattaj; Donald C Rio
RNA-protein interactions.
Cell 1991;67(6):1041-6.
1991: P D Kaufman; Donald C Rio
Germline transformation of Drosophila melanogaster by purified P element transposase.
Nucleic acids research 1991;19(22):6336.
1991: Donald C Rio
Regulation of Drosophila P element transposition.
Trends in genetics : TIG 1991;7(9):282-7.
1991: P D Kaufman; Donald C Rio
Drosophila P-element transposase is a transcriptional repressor in vitro.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(7):2613-7.
1990: S Misra; Donald C Rio
Cytotype control of Drosophila P element transposition: the 66 kd protein is a repressor of transposase activity.
Cell 1990;62(2):269-84.
1990: C W Siebel; Donald C Rio
Regulated splicing of the Drosophila P transposable element third intron in vitro: somatic repression.
Science (New York, N.Y.) 1990;248(4960):1200-8.
1990: Donald C Rio
Molecular mechanisms regulating Drosophila P element transposition.
Annual review of genetics 1990;24():543-78.
1989: P D Kaufman; R F Doll; Donald C Rio
Drosophila P element transposase recognizes internal P element DNA sequences.
Cell 1989;59(2):359-71.
1989: M C Mullins; Donald C Rio; Gerald M Rubin
cis-acting DNA sequence requirements for P-element transposition.
Genes & development 1989;3(5):729-38.
1989: R F Doll; P D Kaufman; S Misra; Donald C Rio
Molecular biology of Drosophila P-element transposition.
Progress in nucleic acid research and molecular biology 1989;36():47-57.
1988: Donald C Rio; G M Rubin
Identification and purification of a Drosophila protein that binds to the terminal 31-base-pair inverted repeats of the P transposable element.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(23):8929-33.
1988: Donald C Rio
Accurate and efficient pre-mRNA splicing in Drosophila cell-free extracts.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(9):2904-8.
1988: Donald C Rio; G Barnes; F A Laski; Jasper Rine; Gerald M Rubin
Evidence for Drosophila P element transposase activity in mammalian cells and yeast.
Journal of molecular biology 1988;200(2):411-5.
1986: P D Robbins; Donald C Rio; Michael R Botchan
trans Activation of the simian virus 40 enhancer.
Molecular and cellular biology 1986;6(4):1283-95.
1986: F A Laski; Donald C Rio; Gerald M Rubin
Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing.
Cell 1986;44(1):7-19.
1986: Donald C Rio; F A Laski; Gerald M Rubin
Identification and immunochemical analysis of biologically active Drosophila P element transposase.
Cell 1986;44(1):21-32.
1985: Donald C Rio; G M Rubin
Transformation of cultured Drosophila melanogaster cells with a dominant selectable marker.
Molecular and cellular biology 1985;5(8):1833-8.
1985: Donald C Rio; S G Clark; Robert Tjian
A mammalian host-vector system that regulates expression and amplification of transfected genes by temperature induction.
Science (New York, N.Y.) 1985;227(4682):23-8.
1985: Gerald M Rubin; T Hazelrigg; R E Karess; F A Laski; T Laverty; R Levis; Donald C Rio; F A Spencer; C S Zuker
Germ line specificity of P-element transposition and some novel patterns of expression of transduced copies of the white gene.
Cold Spring Harbor symposia on quantitative biology 1985;50():329-35.
1984: Donald C Rio; Robert Tjian
Multiple control elements involved in the initiation of SV40 late transcription.
Journal of molecular and applied genetics 1984;2(5):423-35.
1983: Donald C Rio; Robert Tjian
SV40 T antigen binding site mutations that affect autoregulation.
Cell 1983;32(4):1227-40.
1981: Richard Myers; Donald C Rio; A K Robbins; Robert Tjian
SV40 gene expression is modulated by the cooperative binding of T antigen to DNA.
Cell 1981;25(2):373-84.
1980: Donald C Rio; A Robbins; R Myers; Robert Tjian
Regulation of simian virus 40 early transcription in vitro by a purified tumor antigen.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(10):5706-10.