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David Robertson

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Jan Weber; Dane Winner; Alison Wright; Doug Wylie; Ariel M Rhea; David L Robertson; Justine D Rose; Vicente Soriano; Ana C Vazquez; John Archer; Eric J Arts; Richard M Gibson; Kenneth Henry; Kevin King; Paul David Olivo; Eva Poveda; Miguel E Quinones-Mateu
Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.
David Talavera; David L Robertson; Simon C Lovell
Alternative splicing and protein interaction data sets.
Ryan M Ames; Simon C Lovell; Jamie I Macpherson; John W Pinney; David L Robertson
Modular biological function is most effectively captured by combining molecular interaction data types.

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All Publications

2013: Jan Weber; Dane Winner; Alison Wright; Doug Wylie; Ariel M Rhea; David L Robertson; Justine D Rose; Vicente Soriano; Ana C Vazquez; John Archer; Eric J Arts; Richard M Gibson; Kenneth Henry; Kevin King; Paul David Olivo; Eva Poveda; Miguel E Quinones-Mateu
Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.
Journal of clinical microbiology 2013;51(5):1517-27.
2013: David Talavera; David L Robertson; Simon C Lovell
Alternative splicing and protein interaction data sets.
Nature biotechnology 2013;31(4):292-3.
2013: Ryan M Ames; Simon C Lovell; Jamie I Macpherson; John W Pinney; David L Robertson
Modular biological function is most effectively captured by combining molecular interaction data types.
PloS one 2013;8(5):e62670.
2013: David Talavera; David L Robertson; Simon C Lovell
The role of protein interactions in mediating essentiality and synthetic lethality.
PloS one 2013;8(4):e62866.
2012: Lakshmipuram S Swapna; David L Robertson; Narayanaswamy Srinivasan; Simon C Lovell
The origins of the evolutionary signal used to predict protein-protein interactions.
BMC evolutionary biology 2012;12():238.
2012: John Archer; Eric J Arts; Richard Gibson; Kenneth Henry; Lawrence Lee; Larry Mimms; Ellen Paxinos; David L Robertson; Jan Weber; Dane Winner; Miguel E Quinones-Mateu
Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.
PloS one 2012;7(11):e49602.
2012: Daniel G Jamieson; Goran Nenadic; Martin Gerner; Farzaneh Sarafraz; David L Robertson
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.
Database : the journal of biological databases and curation 2012;2012():bas023.
2012: John Archer; Greg Baillie; Kellam Paul; Andrew Rambaut; Simon J Watson; David L Robertson
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
BMC bioinformatics 2012;13():47.
2012: Jonathan E Dickerson; David L Robertson
On the origins of Mendelian disease genes in man: the impact of gene duplication.
Molecular biology and evolution 2012;29(1):61-9.
2011: Simon G Williams; John Archer; Rachit Madan; Kenji Mizuguchi; Matthew G S Norris; David L Robertson; Simon C Lovell
Using knowledge of protein structural constraints to predict the evolution of HIV-1.
Journal of molecular biology 2011;410(5):1023-34.
2011: Derren J Heyes; Colin Levy; Michiyo Sakuma; David L Robertson; Nigel S Scrutton
A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase.
The Journal of biological chemistry 2011;286(13):11849-54.
2011: Jonathan E Dickerson; David L Robertson; Ana Zhu; Kathryn E Hentges
Defining the role of essential genes in human disease.
PloS one 2011;6(11):e27368.
2011: Jamie I MacPherson; Tanya Parkinson; Perdita Backes; Francis Chisari; Oona Delpuech-Adams; Marilyn Lewis; Volker Lohmann; Ben Sidders; Paul Targett-Adams; Stefan Wieland; Jin Zhong; David L Robertson
An integrated transcriptomic and meta-analysis of hepatoma cells reveals factors that influence susceptibility to HCV infection.
PloS one 2011;6(10):e25584.
2011: David Talavera; David L Robertson; Simon C Lovell
Characterization of protein-protein interaction interfaces from a single species.
PloS one 2011;6(6):e21053.
2010: Jeongmin Woo; David L Robertson; Simon C Lovell
Constraints on HIV-1 diversity from protein structure.
Journal of virology 2010;84(24):12995-3003.
2010: Simon C Lovell; David L Robertson
An integrated view of molecular coevolution in protein-protein interactions.
Molecular biology and evolution 2010;27(11):2567-75.
2010: John Archer; Andrew Rambaut; Bruce E Taillon; P Richard Harrigan; Marilyn Lewis; David L Robertson
The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach.
PLoS computational biology 2010;6(12):e1001022.
2010: Jamie I MacPherson; Jonathan E Dickerson; John W Pinney; David L Robertson
Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems.
PLoS computational biology 2010;6(7):e1000863.
2010: Ryan M Ames; Bharat M Rash; Kathryn E Hentges; David L Robertson; Daniela Delneri; Simon C Lovell
Gene duplication and environmental adaptation within yeast populations.
Genome biology and evolution 2010;2():591-601.
2010: Jonathan E Dickerson; John W Pinney; David L Robertson
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack.
BMC systems biology 2010;4():80.
2009: David L Robertson; Simon C Lovell
Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication.
Biochemical Society transactions 2009;37(Pt 4):768-71.
2009: John Archer; Michael S Braverman; Bruce E Taillon; Brian Desany; Ian James; P Richard Harrigan; Marilyn Lewis; David L Robertson
Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.
AIDS (London, England) 2009;23(10):1209-18.
2009: John W Pinney; Jonathan E Dickerson; William Fu; Brigitte E Sanders-Beer; Roger G Ptak; David L Robertson
HIV-host interactions: a map of viral perturbation of the host system.
AIDS (London, England) 2009;23(5):549-54.
2009: Jamie I Macpherson; John W Pinney; David L Robertson
JNets: exploring networks by integrating annotation.
BMC bioinformatics 2009;10():95.
2008: John Archer; John W Pinney; Jun Fan; Etienne Simon-Loriere; Eric J Arts; Matteo Negroni; David L Robertson
Identifying the important HIV-1 recombination breakpoints.
PLoS computational biology 2008;4(9):e1000178.
2008: James M Eales; John W Pinney; Robert D Stevens; David L Robertson
Methodology capture: discriminating between the "best" and the rest of community practice.
BMC bioinformatics 2008;9():359.
2008: Luke Hakes; John W Pinney; David L Robertson; Simon C Lovell
Protein-protein interaction networks and biology--what's the connection?
Nature biotechnology 2008;26(1):69-72.
2007: John W Pinney; Gregory D Amoutzias; Magnus Rattray; David L Robertson
Reconstruction of ancestral protein interaction networks for the bZIP transcription factors.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(51):20449-53.
2007: Jun Fan; Matteo Negroni; David L Robertson
The distribution of HIV-1 recombination breakpoints.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2007;7(6):717-23.
2007: John Archer; David L Robertson
CTree: comparison of clusters between phylogenetic trees made easy.
Bioinformatics (Oxford, England) 2007;23(21):2952-3.
2007: John Archer; David L Robertson
Understanding the diversification of HIV-1 groups M and O.
AIDS (London, England) 2007;21(13):1693-700.
2007: Luke Hakes; Simon C Lovell; Stephen G Oliver; David L Robertson
Specificity in protein interactions and its relationship with sequence diversity and coevolution.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(19):7999-8004.
2007: Gregory D Amoutzias; A S Veron; January Weiner; Marc Robinson-Rechavi; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Molecular biology and evolution 2007;24(3):827-35.
2007: Luke Hakes; John W Pinney; Simon C Lovell; Stephen G Oliver; David L Robertson
All duplicates are not equal: the difference between small-scale and genome duplication.
Genome biology 2007;8(10):R209.
2007: Brian J Holden; John W Pinney; Simon C Lovell; Gregory D Amoutzias; David L Robertson
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network.
BMC bioinformatics 2007;8():289.
2007: Gregory D Amoutzias; Elgar E Pichler; Nina Mian; David de Graaf; Anastasia Imsiridou; Marc Robinson-Rechavi; Erich Bornberg-Bauer; David L Robertson; Stephen G Oliver
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC systems biology 2007;1():34.
2007: Luke Hakes; David L Robertson; Stephen G Oliver; Simon C Lovell
Protein interactions from complexes: a structural perspective.
Comparative and functional genomics 2007;():49356.
2006: Heather Baird; Román Galetto; Yong Gao; Etienne Simon-Loriere; Measho Abreha; John Archer; Jun Fan; David L Robertson; Eric J Arts; Matteo Negroni
Sequence determinants of breakpoint location during HIV-1 intersubtype recombination.
Nucleic acids research 2006;34(18):5203-16.
2006: Gregory D Amoutzias; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network.
BMC genomics 2006;7():107.
2005: Luke Hakes; David L Robertson; Stephen G Oliver
Effect of dataset selection on the topological interpretation of protein interaction networks.
BMC genomics 2005;6():131.
2004: Gregory D Amoutzias; David L Robertson; Stephen G Oliver; Erich Bornberg-Bauer
Convergent evolution of gene networks by single-gene duplications in higher eukaryotes.
EMBO reports 2004;5(3):274-9.
2004: Gregory D Amoutzias; David L Robertson; Erich Bornberg-Bauer
The evolution of protein interaction networks in regulatory proteins.
Comparative and functional genomics 2004;5(1):79-84.