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Francisco Rodríguez-Valera

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Soo-Je Park; Francisco Rodríguez-Valera; In-Tae Cha; Rohit Ghai; Man-Young Jung; Jong-Geol Kim; So-Jeong Kim; Ana Belén Martín-Cuadrado; Sung-Keun Rhee
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle.
Soo-Je Park; Francisco Rodríguez-Valera; Rohit Ghai; Man-Young Jung; Jong-Geol Kim; Ana Belén Martín-Cuadrado; Sung-Keun Rhee
Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.
Céline Brochier-Armanet; Philippe Deschamps; Purificación López-García; Francisco Rodríguez-Valera; Yvan Zivanovic; David Moreira
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

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All Publications

2012: Soo-Je Park; Francisco Rodríguez-Valera; In-Tae Cha; Rohit Ghai; Man-Young Jung; Jong-Geol Kim; So-Jeong Kim; Ana Belén Martín-Cuadrado; Sung-Keun Rhee
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle.
Journal of bacteriology 2012;194(24):6948-9.
2012: Soo-Je Park; Francisco Rodríguez-Valera; Rohit Ghai; Man-Young Jung; Jong-Geol Kim; Ana Belén Martín-Cuadrado; Sung-Keun Rhee
Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.
Journal of bacteriology 2012;194(15):4128-9.
2011: Céline Brochier-Armanet; Philippe Deschamps; Purificación López-García; Francisco Rodríguez-Valera; Yvan Zivanovic; David Moreira
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.
The ISME journal 2011;5(8):1291-302.
2011: Rohit Ghai; Ana-Belen Martin-Cuadrado; Katherine D McMahon; Carolina Megumi Mizuno; R Thane Papke; Lejla Pašić; Beltran Rodriguez-Brito; Forest Rohwer; Cristina Sánchez-Porro; Ramunas Stepanauskas; Antonio Ventosa; Ana Beatriz Fernández; Francisco Rodríguez-Valera
New abundant microbial groups in aquatic hypersaline environments.
Scientific reports 2011;1():135.
2010: Alex Mira; Ana B Martín-Cuadrado; Giuseppe D'Auria; Francisco Rodríguez-Valera
The bacterial pan-genome:a new paradigm in microbiology.
International microbiology : the official journal of the Spanish Society for Microbiology 2010;13(2):45-57.
2008: Elena Ivars-Martínez; Giuseppe D'Auria; Francisco Rodríguez-Valera; Cristina Sânchez-Porro; Antonio Ventosa; Ian Joint; Martin Mühling
Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis.
Molecular ecology 2008;17(18):4092-106.
2007: Arantxa López-López; Susana Benlloch; M Bonfá; Francisco Rodríguez-Valera; Alex Mira
Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures.
Journal of molecular evolution 2007;65(6):687-96.
2007: David G Burns; Peter Janssen; Takashi Itoh; Masahiro Kamekura; Zhuo Li; Grant Jensen; Francisco Rodríguez-Valera; Henk Bolhuis; Mike Dyall-Smith
Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain.
International journal of systematic and evolutionary microbiology 2007;57(Pt 2):387-92.
2007: Ana-Belen Martín-Cuadrado; Purificación López-García; Juan-Carlos Alba; David Moreira; Luis Monticelli; Axel Strittmatter; Gerhard Gottschalk; Francisco Rodríguez-Valera
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat.
PloS one 2007;2(9):e914.
2006: Milagros Zaballos; Arantxa López-López; Lise Ovreas; Sergio Galán Bartual; Giuseppe D'Auria; Jose Carlos Alba; Boris A Legault; Ravindra Pushker; Frida Lise Daae; Francisco Rodríguez-Valera
Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea.
FEMS microbiology ecology 2006;56(3):389-405.
2006: Alex Mira; Ravindra Pushker; Francisco Rodríguez-Valera
The Neolithic revolution of bacterial genomes.
Trends in microbiology 2006;14(5):200-6.
2006: David Moreira; Francisco Rodríguez-Valera; Purificación López-García
Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group.
Microbiology (Reading, England) 2006;152(Pt 2):505-17.
2005: Sergio Galán Bartual; Harald Seifert; Corinna Hippler; M Angeles Domínguez Luzon; Hilmar Wisplinghoff; Francisco Rodríguez-Valera
Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii.
Journal of clinical microbiology 2005;43(9):4382-90.
2005: Arantxa López-López; Sergio Galán Bartual; Lucas Stal; Olga Onyshchenko; Francisco Rodríguez-Valera
Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea.
Environmental microbiology 2005;7(5):649-59.
2005: Ravindra Pushker; Giuseppe D'Auria; Jose Carlos Alba-Casado; Francisco Rodríguez-Valera
Micro-Mar: a database for dynamic representation of marine microbial biodiversity.
BMC bioinformatics 2005;6():222.
2004: Alex Mira; Ravindra Pushker; Boris A Legault; David Moreira; Francisco Rodríguez-Valera
Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics.
BMC evolutionary biology 2004;4():50.
2004: David Moreira; Francisco Rodríguez-Valera; Purificación López-García
Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes.
Environmental microbiology 2004;6(9):959-69.
2004: Francisco Rodríguez-Valera
Environmental genomics, the big picture?
FEMS microbiology letters 2004;231(2):153-8.
2004: Ravindra Pushker; Alex Mira; Francisco Rodríguez-Valera
Comparative genomics of gene-family size in closely related bacteria.
Genome biology 2004;5(4):R27.
2004: Purificación López-García; Céline Brochier; David Moreira; Francisco Rodríguez-Valera
Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers.
Environmental microbiology 2004;6(1):19-34.
2003: Monserrat Ruiz; Juan Carlos Rodríguez; Francisco Rodríguez-Valera; Gloria Royo
Amplified-fragment length polymorphism as a complement to IS6110-based restriction fragment length polymorphism analysis for molecular typing of Mycobacterium tuberculosis.
Journal of clinical microbiology 2003;41(10):4820-2.
2003: Ana Cifuentes; Josefa Antón; Rutger De Wit; Francisco Rodríguez-Valera
Diversity of bacteria and Archaea in sulphate-reducing enrichment cultures inoculated from serial dilution of Zostera noltii rhizosphere samples.
Environmental microbiology 2003;5(9):754-64.
2002: Francisco Rodríguez-Valera
Approaches to prokaryotic biodiversity: a population genetics perspective.
Environmental microbiology 2002;4(11):628-33.
2002: Sara Pérez-Luz; Javier Fernandez; Francisco Rodríguez-Valera; Leonor Pascual; Carmen Moreno; Antonio Amo; David Apraiz; Vicente Catalán
Sequence diversity of the internal transcribed spacer (ITS) region of the rRNA operons among different serogroups of Legionella pneumophila isolates.
Systematic and applied microbiology 2002;25(2):212-9.
2002: Arantxa López-López; María J Pujalte; Susana Benlloch; Manuel Mata-Roig; Ramon Rosselló-Mora; Esperanza Garay; Francisco Rodríguez-Valera
Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the alpha-Proteobacteria.
International journal of systematic and evolutionary microbiology 2002;52(Pt 4):1277-83.
2002: José Such; Rubén Francés; Carlos Muñoz; Pedro Zapater; Juan A Casellas; Ana Cifuentes; Francisco Rodríguez-Valera; Sonia Pascual; Javier Sola-Vera; Fernando Carnicer; Francisco Uceda; José M Palazón; Miguel Pérez-Mateo
Detection and identification of bacterial DNA in patients with cirrhosis and culture-negative, nonneutrocytic ascites.
Hepatology (Baltimore, Md.) 2002;36(1):135-41.
2002: Susana Benlloch; Arantxa López-López; Emilio O Casamayor; Lise Øvreås; Victoria Goddard; Frida Lise Daae; Gary Smerdon; Ramon Massana; Ian Joint; Tron Frede Thingstad; Carlos Pedrós-Alió; Francisco Rodríguez-Valera
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern.
Environmental microbiology 2002;4(6):349-60.
2002: Emilio O Casamayor; Ramon Massana; Susana Benlloch; Lise Øvreås; Beatriz Díez; Victoria J Goddard; Josep M Gasol; Ian Joint; Francisco Rodríguez-Valera; Carlos Pedrós-Alió
Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern.
Environmental microbiology 2002;4(6):338-48.
2002: Josefa Antón; Aharon Oren; Susana Benlloch; Francisco Rodríguez-Valera; Rudolf Amann; Ramon Rosselló-Mora
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds.
International journal of systematic and evolutionary microbiology 2002;52(Pt 2):485-91.
2002: Jesús García-Martínez; Silvia G Acinas; Ramon Massana; Francisco Rodríguez-Valera
Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in different oceanic regions.
Environmental microbiology 2002;4(1):42-50.
2002: Montserrat Ruiz; Juan Carlos Rodríguez; Jesús García-Martínez; Isabel Escribano; Elia Sirvent; Félix Gutiérrez; Francisco Rodríguez-Valera; Gloria Royo
Molecular characterization of a Spanish isolate of Mycobacterium malmoense.
Research in microbiology 2002;153(1):33-6.
2002: Purificación López-García; Francisco Rodríguez-Valera; David Moreira
Toward the monophyly of Haeckel's radiolaria: 18S rRNA environmental data support the sisterhood of polycystinea and acantharea.
Molecular biology and evolution 2002;19(1):118-21.
2001: M Ruíz; Juan Carlos Rodríguez; Isabel Escribano; J García-Martínez; Francisco Rodríguez-Valera; Gloria Royo
Application of molecular biology techniques to the diagnosis of nontuberculous mycobacterial infections.
APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2001;109(12):857-64.
2001: David Moreira; Purificación López-García; Francisco Rodríguez-Valera
New insights into the phylogenetic position of diplonemids: G+C content bias, differences of evolutionary rate and a new environmental sequence.
International journal of systematic and evolutionary microbiology 2001;51(Pt 6):2211-9.
2001: Purificación López-García; Francisco Rodríguez-Valera; Carlos Pedrós-Alió; David Moreira
Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton.
Nature 2001;409(6820):603-7.
2001: Purificación López-García; David Moreira; Arantxa López-López; Francisco Rodríguez-Valera
A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions.
Environmental microbiology 2001;3(1):72-8.
2001: J García-Martínez; I Bescós; J J Rodríguez-Sala; Francisco Rodríguez-Valera
RISSC: a novel database for ribosomal 16S-23S RNA genes spacer regions.
Nucleic acids research 2001;29(1):178-80.
2000: Beatriz Díez; Josefa Antón; N Guixa-Boixereu; Carlos Pedrós-Alió; Francisco Rodríguez-Valera
Pulsed-field gel electrophoresis analysis of virus assemblages present in a hypersaline environment.
International microbiology : the official journal of the Spanish Society for Microbiology 2000;3(3):159-64.
2000: Jesús García-Martínez; Francisco Rodríguez-Valera
Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I.
Molecular ecology 2000;9(7):935-48.
2000: Josefa Antón; Ramon Rosselló-Mora; Francisco Rodríguez-Valera; Rudolf Amann
Extremely halophilic bacteria in crystallizer ponds from solar salterns.
Applied and environmental microbiology 2000;66(7):3052-7.
2000: A Cifuentes; Josefa Antón; Susana Benlloch; A Donnelly; R A Herbert; Francisco Rodríguez-Valera
Prokaryotic diversity in Zostera noltii-colonized marine sediments.
Applied and environmental microbiology 2000;66(4):1715-9.
2000: J C Rodríguez; Gloria Royo; Francisco Rodríguez-Valera
Application of four molecular techniques for typing outbreak-associated Mycobacterium tuberculosis strains.
APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2000;108(3):231-6.
1999: Josefa Antón; E Llobet-Brossa; Francisco Rodríguez-Valera; Rudolf Amann
Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds.
Environmental microbiology 1999;1(6):517-23.
1999: Lesley A S Parolis; Haralambos Parolis; N A Paramonov; I F Boán; Josefa Antón; Francisco Rodríguez-Valera
Structural studies on the acidic exopolysaccharide from Haloferax denitrificans ATCC 35960.
Carbohydrate research 1999;319(1-4):133-40.
1999: Jesús García-Martínez; Silvia G Acinas; AI Antón; Francisco Rodríguez-Valera
Use of the 16S--23S ribosomal genes spacer region in studies of prokaryotic diversity.
Journal of microbiological methods 1999;36(1-2):55-64.
1999: AI Antón; AJ Martínez-Murcia; Francisco Rodríguez-Valera
Intraspecific diversity of the 23S rRNA gene and the spacer region downstream in Escherichia coli.
Journal of bacteriology 1999;181(9):2703-9.
1999: AJ Martínez-Murcia; AI Antón; Francisco Rodríguez-Valera
Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli.
International journal of systematic bacteriology 1999;49 Pt 2():601-10.
1999: Silvia G Acinas; Josefa Antón; Francisco Rodríguez-Valera
Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA.
Applied and environmental microbiology 1999;65(2):514-22.
1998: AI Antón; AJ Martínez-Murcia; Francisco Rodríguez-Valera
Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli ECOR collection.
Journal of molecular evolution 1998;47(1):62-72.
1998: N A Paramonov; Lesley A S Parolis; Haralambos Parolis; I F Boán; Josefa Antón; Francisco Rodríguez-Valera
The structure of the exocellular polysaccharide produced by the Archaeon Haloferax gibbonsii (ATCC 33959).
Carbohydrate research 1998;309(1):89-94.
1998: Sara Pérez-Luz; Francisco Rodríguez-Valera; R Lan; peter reeves
Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies.
Journal of bacteriology 1998;180(8):2144-51.
1997: Francisco J M Mojica; E Cisneros; C Ferrer; Francisco Rodríguez-Valera; G Juez
Osmotically induced response in representatives of halophilic prokaryotes: the bacterium Halomonas elongata and the archaeon Haloferax volcanii.
Journal of bacteriology 1997;179(17):5471-81.
1997: A I Zavaleta; AJ Martínez-Murcia; Francisco Rodríguez-Valera
Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses.
Applied and environmental microbiology 1997;63(4):1261-7.
1996: Haralambos Parolis; Lesley A S Parolis; I F Boán; Francisco Rodríguez-Valera; Göran Widmalm; M C Manca; Per-Erik Jansson; I W Sutherland
The structure of the exopolysaccharide produced by the halophilic Archaeon Haloferax mediterranei strain R4 (ATCC 33500).
Carbohydrate research 1996;295():147-56.
1996: J García-Martínez; AJ Martínez-Murcia; AI Antón; Francisco Rodríguez-Valera
Comparison of the small 16S to 23S intergenic spacer region (ISR) of the rRNA operons of some Escherichia coli strains of the ECOR collection and E. coli K-12.
Journal of bacteriology 1996;178(21):6374-7.
1996: A I Zavaleta; AJ Martínez-Murcia; Francisco Rodríguez-Valera
16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous.
Microbiology (Reading, England) 1996;142 ( Pt 8)():2105-14.
1996: J García-Martínez; AJ Martínez-Murcia; Francisco Rodríguez-Valera; A Zorraquino
Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli.
FEMS immunology and medical microbiology 1996;14(4):231-44.
1996: C Ferrer; F J Mojica; G Juez; Francisco Rodríguez-Valera
Differentially transcribed regions of Haloferax volcanii genome depending on the medium salinity.
Journal of bacteriology 1996;178(1):309-13.
1995: Francisco Rodríguez-Valera; J García Martínez; AJ Martínez-Murcia
Intraspecific diversity in Bacteria. The case of Escherichia coli.
Microbiología (Madrid, Spain) 1995;11(3):379-82.
1995: F J Mojica; C Ferrer; G Juez; Francisco Rodríguez-Valera
Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning.
Molecular microbiology 1995;17(1):85-93.
1994: AJ Martínez-Murcia; Francisco Rodríguez-Valera
The use of arbitrarily primed PCR (AP-PCR) to develop taxa specific DNA probes of known sequence.
FEMS microbiology letters 1994;124(3):265-9.
1994: F J Mojica; F Charbonnier; G Juez; Francisco Rodríguez-Valera; Patrick Forterre
Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii.
Journal of bacteriology 1994;176(16):4966-73.
1993: F J Mojica; G Juez; Francisco Rodríguez-Valera
Transcription at different salinities of Haloferax mediterranei sequences adjacent to partially modified PstI sites.
Molecular microbiology 1993;9(3):613-21.
1988: Josefa Antón; I Meseguer; Francisco Rodríguez-Valera
Production of an Extracellular Polysaccharide by Haloferax mediterranei.
Applied and environmental microbiology 1988;54(10):2381-6.
1986: M Pérez-Fillol; Francisco Rodríguez-Valera
Potassium ion accumulation in cells of different halobacteria.
Microbiología (Madrid, Spain) 1986;2(2):73-80.
1985: M Pérez-Fillol; Francisco Rodríguez-Valera; J G Ferry
Isolation of methanogenic bacteria able to grow in high salt concentration.
Microbiología (Madrid, Spain) 1985;1(1-2):29-33.