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Bruce Roe

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Oklahoma

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Bacterial Artificial Chromosomes

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Vaskar Thapa; Ye Margaret Wang; Graham B Wiley; Andrew Doust; Ulrich Melcher; Michael W Palmer; Bruce A Roe; Kimberly Roewe; Marilyn J Roossinck; Guoan Shen; Nitin Kamath
Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.
Kay Scheets; Graham B Wiley; Olga Blinkova; Tao Ding; Ulrich Melcher; Michael W Palmer; Bruce A Roe
Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.
Andrew J Fabich; Mary P Leatham; Joe E Grissom; Graham Wiley; Hongshing Lai; Fares Z Najar; Bruce A Roe; Paul S Cohen; Tyrrell Conway
Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization.

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2012: Vaskar Thapa; Ye Margaret Wang; Graham B Wiley; Andrew Doust; Ulrich Melcher; Michael W Palmer; Bruce A Roe; Kimberly Roewe; Marilyn J Roossinck; Guoan Shen; Nitin Kamath
Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.
Virus research 2012;167(1):34-42.
2011: Kay Scheets; Graham B Wiley; Olga Blinkova; Tao Ding; Ulrich Melcher; Michael W Palmer; Bruce A Roe
Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.
Virus research 2011;160(1-2):256-63.
2011: Andrew J Fabich; Mary P Leatham; Joe E Grissom; Graham Wiley; Hongshing Lai; Fares Z Najar; Bruce A Roe; Paul S Cohen; Tyrrell Conway
Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization.
Infection and immunity 2011;79(6):2430-9.
2010: Samodha C Fernando; H T Purvis; Fares Z Najar; L O Sukharnikov; C R Krehbiel; T G Nagaraja; Bruce A Roe; Udaya Desilva
Rumen microbial population dynamics during adaptation to a high-grain diet.
Applied and environmental microbiology 2010;76(22):7482-90.
2010: Jessica Matts; Guru Jagadeeswaran; Bruce A Roe; Ramanjulu Sunkar
Identification of microRNAs and their targets in switchgrass, a model biofuel plant species.
Journal of plant physiology 2010;167(11):896-904.
2010: Phillip S Coburn; Arto S Baghdayan; Nikki Craig; Adam Burroughs; Preeti Tendolkar; Kris Miller; Fares Z Najar; Bruce A Roe; Nathan Shankar
A novel conjugative plasmid from Enterococcus faecalis E99 enhances resistance to ultraviolet radiation.
Plasmid 2010;64(1):18-25.
2009: Noha Youssef; Cody S Sheik; Lee R Krumholz; Fares Z Najar; Bruce A Roe; Mostafa S Elshahed
Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.
Applied and environmental microbiology 2009;75(16):5227-36.
2009: Vijay Muthukumar; Ulrich Melcher; Marlee Pierce; Graham B Wiley; Bruce A Roe; Michael W Palmer; Vaskar Thapa; Akhtar Ali; Tao Ding
Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions.
Virus research 2009;141(2):169-73.
2009: Graham Wiley; Simone Macmil; Chunmei Qu; Ping Wang; Yanbo Xing; Doug White; Jianfeng Li; James D White; Alexander Domingo; Bruce A Roe
Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer.
Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.] 2009;Chapter 18():Unit18.1.
2009: Majd N Aljamali; L Hern; D Kupfer; S Downard; S So; Bruce A Roe; John R Sauer; Richard C Essenberg
Transcriptome analysis of the salivary glands of the female tick Amblyomma americanum (Acari: Ixodidae).
Insect molecular biology 2009;18(2):129-54.
2009: Guru Jagadeeswaran; Yun Zheng; Yong-Fang Li; Lata I Shukla; Jessica Matts; Peter Hoyt; Simone L Macmil; Graham B Wiley; Bruce A Roe; Weixiong Zhang; Ramanjulu Sunkar
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families.
The New phytologist 2009;184(1):85-98.
2009: Alavala Matta Reddy; Yun Zheng; Guru Jagadeeswaran; Simone L Macmil; Wiley B Graham; Bruce A Roe; Udaya Desilva; Weixiong Zhang; Ramanjulu Sunkar
Cloning, characterization and expression analysis of porcine microRNAs.
BMC genomics 2009;10():65.
2008: William M McShan; Joseph J Ferretti; Tadahiro Karasawa; Alexander N Suvorov; Shaoping Lin; Biafang Qin; Honggui Jia; Steve Kenton; Fares Najar; Hongmin Wu; Julie Scott; Bruce A Roe; Dragutin J Savic
Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes.
Journal of bacteriology 2008;190(23):7773-85.
2008: Mostafa S Elshahed; Noha H Youssef; Anne M Spain; Cody Sheik; Fares Z Najar; Leonid O Sukharnikov; Bruce A Roe; James P Davis; Patrick D Schloss; Vanessa L Bailey; Lee R Krumholz
Novelty and uniqueness patterns of rare members of the soil biosphere.
Applied and environmental microbiology 2008;74(17):5422-8.
2008: Ulrich Melcher; Vijay Muthukumar; Graham B Wiley; Byoung Eun Min; Michael W Palmer; Jeanmarie Verchot-Lubicz; Akhtar Ali; Richard S Nelson; Bruce A Roe; Vaskar Thapa; Margaret L Pierce
Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya.
Journal of virological methods 2008;152(1-2):49-55.
2008: Raul Yhossef Tito Tadeo; Simone Macmil; Graham Wiley; Fares Najar; Lauren Cleeland; Chunmei Qu; Ping Wang; Frederic Romagne; Sylvain Leonard; Agustín Jiménez Ruiz; Karl Reinhard; Bruce A Roe; Cecil M Lewis
Phylotyping and functional analysis of two ancient human microbiomes.
PloS one 2008;3(11):e3703.
2007: Anne M Spain; Aaron D Peacock; Jonathan D Istok; Mostafa S Elshahed; Fares Z Najar; Bruce A Roe; David C White; Lee R Krumholz
Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer.
Applied and environmental microbiology 2007;73(15):4892-904.
2007: Mostafa S Elshahed; Noha H Youssef; Qingwei Luo; Fares Z Najar; Bruce A Roe; Tracy M Sisk; Solveig I Bühring; Kai-Uwe Hinrichs; Lee R Krumholz
Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.
Applied and environmental microbiology 2007;73(15):4707-16.
2007: Wolfgang Rabsch; Li Ma; Graham Wiley; Fares Z Najar; Wallace Kaserer; Daniel W Schuerch; Joseph E Klebba; Bruce A Roe; Jenny A Laverde Gomez; Marcus Schallmey; Salete Newton; Phillip E Klebba
FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence.
Journal of bacteriology 2007;189(15):5658-74.
2007: Samodha C Fernando; Fares Z Najar; X Guo; L Zhou; Y Fu; Rodney D Geisert; Bruce A Roe; Udaya Desilva
Porcine kallikrein gene family: genomic structure, mapping, and differential expression analysis.
Genomics 2007;89(3):429-38.
2006: Steven B Cannon; Lieven Sterck; Stephane Marcel Rombauts; Shusei Sato; Foo Cheung; Jérôme Gouzy; Xiaohong Wang; Joann Mudge; Jayprakash Vasdewani; Thomas Schiex; Thomas Scheix; Manuel Spannagl; Erin Monaghan; Christine Nicholson; Sean Humphray; Heiko Schoof; Klaus F X Mayer; Jane Rogers; Francis Quétier; Giles E D Oldroyd; Frédéric Debellé; Douglas R Cook; Ernest F Retzel; Bruce A Roe; Christopher D Town; Satoshi Tabata; Yves Van de Peer; Nevin D Young
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14959-64.
2006: Ellen L Dally; Thereza S L Barros; Yan Zhao; ShaoPing Lin; Bruce A Roe; Robert E Davis
Physical and genetic map of the Spiroplasma kunkelii CR2-3x chromosome.
Canadian journal of microbiology 2006;52(9):857-67.
2005: Q Zhang; Ulrich Melcher; L Zhou; Fares Z Najar; Bruce A Roe; Jacqueline Fletcher
Genomic comparison of plant pathogenic and nonpathogenic Serratia marcescens strains by suppressive subtractive hybridization.
Applied and environmental microbiology 2005;71(12):7716-23.
2005: Mostafa S Elshahed; Fares Z Najar; Mandy Aycock; Chunmei Qu; Bruce A Roe; Lee R Krumholz
Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1.
Applied and environmental microbiology 2005;71(11):7598-602.
2005: Qingwei Luo; Lee R Krumholz; Fares Z Najar; Aaron D Peacock; Bruce A Roe; David C White; Mostafa S Elshahed
Diversity of the microeukaryotic community in sulfide-rich Zodletone Spring (Oklahoma).
Applied and environmental microbiology 2005;71(10):6175-84.
2005: Steven B Cannon; John Crow; Michael L Heuer; Xiaohong Wang; Ethalinda K S Cannon; Christopher Dwan; Anne-Francoise Lamblin; Jayprakash Vasdewani; Joann Mudge; Andrew Cook; John Gish; Foo Cheung; Steve Kenton; Timothy M Kunau; Douglas Brown; Gregory D May; Dongjin Kim; Douglas R Cook; Bruce A Roe; Christopher D Town; Nevin D Young; Ernest F Retzel
Databases and information integration for the Medicago truncatula genome and transcriptome.
Plant physiology 2005;138(1):38-46.
2005: Nevin D Young; Steven B Cannon; Shusei Sato; Dongjin Kim; Douglas R Cook; Christopher D Town; Bruce A Roe; Satoshi Tabata
Sequencing the genespaces of Medicago truncatula and Lotus japonicus.
Plant physiology 2005;137(4):1174-81.
2005: Joann Mudge; Steven B Cannon; Peter Kalo; Giles E D Oldroyd; Bruce A Roe; Christopher D Town; Nevin D Young
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.
BMC plant biology 2005;5():15.
2004: Robert A Grahn; David S Biller; Amy E Young; Bruce A Roe; B Qin; Leslie A Lyons
Genetic testing for feline polycystic kidney disease.
Animal genetics 2004;35(6):503-4.
2004: Olga Kulikova; René Geurts; Monique Lamine; Dong-Jin Kim; Douglas R Cook; Jack Leunissen; Hans de Jong; Bruce A Roe; Ton Bisseling
Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula.
Chromosoma 2004;113(6):276-83.
2004: Doris M Kupfer; Scott D Drabenstot; Kent L Buchanan; Hongshing Lai; Hua Zhu; David W Dyer; Bruce A Roe; Juneann W Murphy
Introns and splicing elements of five diverse fungi.
Eukaryotic cell 2004;3(5):1088-100.
2004: Leslie A Lyons; David S Biller; Carolyn A Erdman; Monika J Lipinski; Amy E Young; Bruce A Roe; Baifang Qin; Robert A Grahn
Feline polycystic kidney disease mutation identified in PKD1.
Journal of the American Society of Nephrology : JASN 2004;15(10):2548-55.
2004: Mostafa S Elshahed; Fares Z Najar; Bruce A Roe; Aharon Oren; Thomas A Dewers; Lee R Krumholz
Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring.
Applied and environmental microbiology 2004;70(4):2230-9.
2004: Yan Zhao; H Wang; Rosemarie W Hammond; Rasa Jomantiene; Q Liu; Shaoping Lin; Bruce A Roe; Robert E Davis
Predicted ATP-binding cassette systems in the phytopathogenic mollicute Spiroplasma kunkelii.
Molecular genetics and genomics : MGG 2004;271(3):325-38.
2004: Hong-Kyu Choi; Dongjin Kim; Taesik Uhm; Erik Limpens; Hyunju Lim; Jeong-Hwan Mun; Peter Kalo; R Varma Penmetsa; Andrea Seres; Olga Kulikova; Bruce A Roe; Ton Bisseling; György B Kiss; Douglas R Cook
A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa.
Genetics 2004;166(3):1463-502.
2004: Jean-Michel Ané; György B Kiss; Brendan K Riely; R Varma Penmetsa; Giles E D Oldroyd; Céline Ayax; Julien Lévy; Frédéric Debellé; Jong-Min Baek; Peter Kalo; Charles Rosenberg; Bruce A Roe; Sharon R Long; Jean Dénarié; Douglas R Cook
Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes.
Science (New York, N.Y.) 2004;303(5662):1364-7.
2004: Yan Zhao; Rosemarie W Hammond; Ing-Ming Lee; Bruce A Roe; Shaoping Lin; Robert E Davis
Cell division gene cluster in Spiroplasma kunkelii: functional characterization of ftsZ and the first report of ftsA in mollicutes.
DNA and cell biology 2004;23(2):127-34.
2004: Bruce A Roe
Shotgun library construction for DNA sequencing.
Methods in molecular biology (Clifton, N.J.) 2004;255():171-87.
2003: Scott D Drabenstot; Doris M Kupfer; James D White; David W Dyer; Bruce A Roe; Kent L Buchanan; Juneann W Murphy
FELINES: a utility for extracting and examining EST-defined introns and exons.
Nucleic acids research 2003;31(22):e141.
2003: Mostafa S Elshahed; John M Senko; Fares Z Najar; Steve Kenton; Bruce A Roe; Thomas A Dewers; John R Spear; Lee R Krumholz
Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring.
Applied and environmental microbiology 2003;69(9):5609-21.
2003: X Guo; D M Kupfer; GQ Fitch; Bruce A Roe; Udaya Desilva
Identification of a novel lysine-171 allele in the ovine prion protein (PRNP ) gene.
Animal genetics 2003;34(4):303-5.
2003: Yan Zhao; Rosemarie W Hammond; Rasa Jomantiene; Ellen L Dally; Ing-Ming Lee; H Jia; H Wu; Shaoping Lin; P Zhang; Steve Kenton; Fares Najar; A Hua; Bruce A Roe; J Fletcher; Robert E Davis
Gene content and organization of an 85-kb DNA segment from the genome of the phytopathogenic mollicute Spiroplasma kunkelii.
Molecular genetics and genomics : MGG 2003;269(5):592-602.
2003: Stéphane Deschamps; Jeffrey Meyer; Gouri Chatterjee; Hong Wang; Peter Lengyel; Bruce A Roe
The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster.
Genomics 2003;82(1):34-46.
2003: Bruce A Roe; C Lau; S Oommen; J Li; A Hua; H S Lai; Steve Kenton; J White; Han Wang
Comparative analysis of human chromosome 22q11.1-q12.3 with syntenic regions in the chimpanzee, baboon, bovine, mouse, pufferfish, and zebrafish genomes.
Cold Spring Harbor symposia on quantitative biology 2003;68():265-74.
2003: Udaya Desilva; X Guo; D M Kupfer; Samodha C Fernando; A T V Pillai; Fares Z Najar; S So; GQ Fitch; Bruce A Roe
Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep.
Cytogenetic and genome research 2003;102(1-4):89-94.
2002: Dragana Ajdić; William M McShan; Bob McLaughlin; Gorana Savić; Jin Chang; Matthew B Carson; Charles Primeaux; Runying Tian; Steve Kenton; Honggui Jia; Shaoping Lin; Yudong Qian; Shuling Li; Hua Zhu; Fares Najar; Hongshing Lai; Jim White; Bruce A Roe; Joseph J Ferretti
Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(22):14434-9.
2002: John J Iandolo; Veronica Worrell; Kajetan H Groicher; Yudong Qian; Runying Tian; Steve Kenton; Angela Dorman; Honggui Ji; Shaoping Lin; Phoebe Loh; Sulan Qi; Hua Zhu; Bruce A Roe
Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12 and phi 13 of Staphylococcus aureus 8325.
Gene 2002;289(1-2):109-18.
2001: R E Broughton; J E Milam; Bruce A Roe
The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA.
Genome research 2001;11(11):1958-67.
2001: Joseph J Ferretti; William M McShan; Dragana Ajdic; Dragutin J Savic; G Savic; K Lyon; Charles Primeaux; S Sezate; Alexander N Suvorov; Steve Kenton; H S Lai; S P Lin; Yudong Qian; H G Jia; Fares Najar; Q Ren; Hua Zhu; L Song; J White; X Yuan; S W Clifton; Bruce A Roe; R McLaughlin
Complete genome sequence of an M1 strain of Streptococcus pyogenes.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(8):4658-63.
2001: H Zhu; Minou Nowrousian; D Kupfer; Hildur V Colot; Gloria Berrocal Tito; H Lai; Deborah Bell-Pedersen; Bruce A Roe; Jennifer J Loros; Jay C Dunlap
Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes.
Genetics 2001;157(3):1057-65.
2000: Rodney Moreland; M E Dresser; JS Rodgers; Bruce A Roe; J W Conaway; R C Conaway; Jay S Hanas
Identification of a transcription factor IIIA-interacting protein.
Nucleic acids research 2000;28(9):1986-93.
2000: KL Hester; J Lehman; Fares Najar; L Song; Bruce A Roe; C H MacGregor; Paul Hager; Paul V Phibbs; JR Sokatch
Crc is involved in catabolite repression control of the bkd operons of Pseudomonas putida and Pseudomonas aeruginosa.
Journal of bacteriology 2000;182(4):1144-9.
1999: W Jang; A Hua; Sandra V Spilson; Webb Miller; Bruce A Roe; Miriam H Meisler
Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13.
Genome research 1999;9(1):53-61.
1998: Dangeruta Kersulyte; Natalia S Akopyants; Sandra W Clifton; Bruce A Roe; Douglas E Berg
Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori.
Gene 1998;223(1-2):175-86.
1998: Lisa A Lewis; Kyle H Rohde; Mandy Gipson; B Behrens; E Gray; S I Toth; Bruce A Roe; David W Dyer
Identification and molecular analysis of lbpBA, which encodes the two-component meningococcal lactoferrin receptor.
Infection and immunity 1998;66(6):3017-23.
1998: Arthur C-K Chung; David S Durica; Sandra W Clifton; Bruce A Roe; Penny M Hopkins
Cloning of crustacean ecdysteroid receptor and retinoid-X receptor gene homologs and elevation of retinoid-X receptor mRNA by retinoic acid.
Molecular and cellular endocrinology 1998;139(1-2):209-27.
1998: Natalia S Akopyants; Sandra W Clifton; Dangeruta Kersulyte; J E Crabtree; B E Youree; C A Reece; N O Bukanov; E S Drazek; Bruce A Roe; Douglas E Berg
Analyses of the cag pathogenicity island of Helicobacter pylori.
Molecular microbiology 1998;28(1):37-53.
1998: Sandra W Clifton; Bruce A Roe
The beautifully simple but intriguingly complex world of small genomes.
Genome research 1998;8(4):331-3.
1997: P C Giardina; L A Foster; S I Toth; Bruce A Roe; David W Dyer
Analysis of the alcABC operon encoding alcaligin biosynthesis enzymes in Bordetella bronchiseptica.
Gene 1997;194(1):19-24.
1997: D M Kupfer; C A Reece; Sandra W Clifton; Bruce A Roe; R A Prade
Multicellular ascomycetous fungal genomes contain more than 8000 genes.
Fungal genetics and biology : FG & B 1997;21(3):364-72.
1997: Lisa A Lewis; E Gray; Y P Wang; Bruce A Roe; David W Dyer
Molecular characterization of hpuAB, the haemoglobin-haptoglobin-utilization operon of Neisseria meningitidis.
Molecular microbiology 1997;23(4):737-49.
1997: Joseph J Ferretti; Bruce A Roe; S W Clifton; S P Lin; X Wang; M Zhan; A Reece; Alexander N Suvorov; William M McShan
The Streptococcus pyogenes genome sequencing project. A progress report.
Advances in experimental medicine and biology 1997;418():961-3.