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Forest Rohwer

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TOP 3
Craig E Nelson; Forest Rohwer; Jennifer E Smith; Linda Wegley Kelly; Stuart J Goldberg; Andreas F Haas; Craig A Carlson
Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.
Douglas Conrad; Matthew Haynes; Paul B Rainey; Peter Salamon; Merry Youle; Forest Rohwer
Cystic fibrosis therapy: a community ecology perspective.
K L Marhaver; Forest Rohwer; M J A Vermeij; S A Sandin
Janzen-Connell effects in a broadcast-spawning Caribbean coral: distance-dependent survival of larvae and settlers.

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All Publications

2013: Craig E Nelson; Forest Rohwer; Jennifer E Smith; Linda Wegley Kelly; Stuart J Goldberg; Andreas F Haas; Craig A Carlson
Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.
The ISME journal 2013;7(5):962-79.
2013: Douglas Conrad; Matthew Haynes; Paul B Rainey; Peter Salamon; Merry Youle; Forest Rohwer
Cystic fibrosis therapy: a community ecology perspective.
American journal of respiratory cell and molecular biology 2013;48(2):150-6.
2013: K L Marhaver; Forest Rohwer; M J A Vermeij; S A Sandin
Janzen-Connell effects in a broadcast-spawning Caribbean coral: distance-dependent survival of larvae and settlers.
Ecology 2013;94(1):146-60.
2013: John L Mokili; Christopher A Myers; Bahador Nosrat; Patrick J Blair; Bas E Dutilh; Matthew R Haynes; Yan Wei Lim; David Metzgar; Bradley S Schneider; Travis Taylor; Nathan D Wolfe; Forest Rohwer
Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.
PloS one 2013;8(3):e58404.
2012: Katie L Barott; Forest Rohwer
Unseen players shape benthic competition on coral reefs.
Trends in microbiology 2012;20(12):621-8.
2012: Noriko Cassman; Edward F DeLong; Sajia Akhter; Gadiel Alarcón; Florent Angly; Katie Barott; Julia Busch; Bas E Dutilh; J Matthew Haggerty; Tracey McDole; Alejandra Prieto-Davó; Forest Rohwer; Genivaldo G Z Silva; Osvaldo Ulloa; Kevin Walsh; Dana Willner; Elizabeth A Dinsdale
Oxygen minimum zones harbour novel viral communities with low diversity.
Environmental microbiology 2012;14(11):3043-65.
2012: Alejandro Reyes; Forest Rohwer; Nicholas P Semenkovich; Katrine Whiteson; Jeffrey I Gordon
Going viral: next-generation sequencing applied to phage populations in the human gut.
Nature reviews. Microbiology 2012;10(9):607-17.
2012: Merry Youle; Judith P Armitage; Richard M Berry; Antje Boetius; Nicolas J Delalez; Stephen P Diggle; James Gurney; Saskia Hogenhout; Sophien Kamoun; Ashley L Nord; Eric J G Pollitt; Forest Rohwer; Apollo Stacy; Bradley C Steel; Marvin Whiteley; S Craig Cary
The Microbial Olympics.
Nature reviews. Microbiology 2012;10(8):583-8.
2012: Florent Angly; Philip Hugenholtz; Forest Rohwer; Dana Willner; Gene W Tyson
Grinder: a versatile amplicon and shotgun sequence simulator.
Nucleic acids research 2012;40(12):e94.
2012: David T Pride; Forest Rohwer; Julia Salzman; Richard A White; Gary C Armitage; Clara Davis-Long; Matthew Haynes; Peter Loomer; David A Relman
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.
The ISME journal 2012;6(5):915-26.
2012: Katie L Barott; Kristen L Marhaver; Beltran Rodriguez-Mueller; Jennifer E Smith; Mark J A Vermeij; Merry Youle; Forest Rohwer
Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae.
Proceedings. Biological sciences / The Royal Society 2012;279(1733):1655-64.
2012: Linda Wegley Kelly; Bahador Nosrat; David Obura; Enric Sala; Stuart A Sandin; Jennifer E Smith; Mark J A Vermeij; Gareth J Williams; Dana Willner; Katie L Barott; Elizabeth Dinsdale; Alan M Friedlander; Forest Rohwer
Black reefs: iron-induced phase shifts on coral reefs.
The ISME journal 2012;6(3):638-49.
2012: John L Mokili; Forest Rohwer; Bas E Dutilh
Metagenomics and future perspectives in virus discovery.
Current opinion in virology 2012;2(1):63-77.
2012: Dana Willner; Merry Youle; Robert Schmieder; Douglas Conrad; Mike Furlan; Nicole Hanson; Matthew R Haynes; Breeann Kirby; Yan Wei Lim; Paul B Rainey; Forest Rohwer
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.
American journal of respiratory cell and molecular biology 2012;46(2):127-31.
2012: Dana Willner; Mike Furlan; Matthew R Haynes; Yan Wei Lim; Paul B Rainey; Forest Rohwer; Robert Schmieder; Douglas Conrad
Spatial distribution of microbial communities in the cystic fibrosis lung.
The ISME journal 2012;6(2):471-4.
2012: Sara Zarei; Rebecca J Theilmann; Douglas J Conrad; Ali Mirtar; Forest Rohwer; Peter Salamon
Mucus distribution model in a lung with cystic fibrosis.
Computational and mathematical methods in medicine 2012;2012():970809.
2012: Tracey McDole; Marc O Nadon; Bahador Nosrat; James Nulton; Barbara Bailey; Katie L Barott; Russell E Brainard; Ben Felts; Carol Hand; Mark Hatay; Hochul Lee; Peter Salamon; Stuart A Sandin; Bernardo Vargas-Angel; Merry Youle; Brian J Zgliczynski; Forest Rohwer
Assessing coral reefs on a Pacific-wide scale using the microbialization score.
PloS one 2012;7(9):e43233.
2011: Itai Sharon; Eva-Mari Aro; Natalia Battchikova; Mya Breitbart; Carmela Giglione; Fabian Glaser; Thierry Meinnel; Ron Y Pinter; Forest Rohwer; Oded Béjà
Comparative metagenomics of microbial traits within oceanic viral communities.
The ISME journal 2011;5(7):1178-90.
2011: Katie L Barott; Beltran Rodriguez-Brito; Jan Janouškovec; Kristen L Marhaver; Jennifer E Smith; Patrick Keeling; Forest Rohwer
Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis.
Environmental microbiology 2011;13(5):1192-204.
2011: Dana Willner; Mike Furlan; Robert Schmieder; Juris A Grasis; David T Pride; David A Relman; Florent Angly; Tracey McDole; Ray P Mariella; Forest Rohwer; Matthew Haynes
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.
Proceedings of the National Academy of Sciences of the United States of America 2011;108 Suppl 1():4547-53.
2011: Rohit Ghai; Ana-Belen Martin-Cuadrado; Katherine D McMahon; Carolina Megumi Mizuno; R Thane Papke; Lejla Pašić; Beltran Rodriguez-Brito; Forest Rohwer; Cristina Sánchez-Porro; Ramunas Stepanauskas; Antonio Ventosa; Ana Beatriz Fernández; Francisco Rodríguez-Valera
New abundant microbial groups in aquatic hypersaline environments.
Scientific reports 2011;1():135.
2011: Andreas F Haas; James J Leichter; Craig E Nelson; Forest Rohwer; Linda Wegley Kelly; Alex Wyatt; Craig A Carlson; Jennifer E Smith
Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity.
PloS one 2011;6(11):e27973.
2011: Terry Fei Fan Ng; Christina Nilsson; Forest Rohwer; Yijun Ruan; Robert Schmieder; Dana L Willner; Simon Anthony; Betty Chau; Yan Wei Lim; Mya Breitbart
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes.
PloS one 2011;6(6):e20579.
2011: Ariella Alperovitch-Lavy; Itai Sharon; Forest Rohwer; Eva-Mari Aro; Fabian Glaser; Ron Milo; Nathan Nelson; Oded Béjà
Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets.
Environmental microbiology 2011;13(1):24-32.
2010: Alejandro Reyes; Matthew Haynes; Nicole Hanson; Florent E Angly; Andrew C Heath; Forest Rohwer; Jeffrey I Gordon
Viruses in the faecal microbiota of monozygotic twins and their mothers.
Nature 2010;466(7304):334-8.
2010: Beltran Rodriguez-Brito; Linlin Li; Linda Wegley; Mike Furlan; Florent Angly; Mya Breitbart; John Buchanan; Christelle Desnues; Elizabeth Dinsdale; Robert Edwards; Ben Felts; Matthew Haynes; Hong Liu; David Lipson; Joseph Mahaffy; Anna Belen Martin-Cuadrado; Alex Mira; Jim Nulton; Lejla Pasić; Steve Rayhawk; Jennifer Rodriguez-Mueller; Francisco Rodriguez-Valera; Peter Salamon; Shailaja Srinagesh; Tron Frede Thingstad; Tuong Tran; Rebecca Vega Thurber; Dana Willner; Merry Youle; Forest Rohwer
Viral and microbial community dynamics in four aquatic environments.
The ISME journal 2010;4(6):739-51.
2010: Shaomei He; Victor Kunin; Matthew Haynes; Hector Garcia Martin; Natalia Ivanova; Forest Rohwer; Philip Hugenholtz; Katherine D McMahon
Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.
Environmental microbiology 2010;12(5):1205-17.
2010: Robert Schmieder; Yan Wei Lim; Forest Rohwer; Robert Edwards
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.
BMC bioinformatics 2010;11():341.
2010: Katie L Barott; Jennifer E Caselle; Elizabeth A Dinsdale; Alan M Friedlander; James E Maragos; David Obura; Forest Rohwer; Stuart A Sandin; Jennifer E Smith; Brian Zgliczynski
The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem.
PloS one 2010;5(6):e10950.
2009: Florent Angly; Dana Willner; Alejandra Prieto-Davó; Robert A Edwards; Robert Schmieder; Rebecca Vega-Thurber; Dionysios A Antonopoulos; Katie Barott; Matthew T Cottrell; Christelle Desnues; Elizabeth A Dinsdale; Mike Furlan; Matthew Haynes; Matthew R Henn; Yongfei Hu; David L Kirchman; Tracey McDole; John D McPherson; Folker Meyer; R Michael Miller; Egbert S. Mundt; Robert K Naviaux; Beltran Rodriguez-Mueller; Rick Stevens; Linda Wegley; Lixin Zhang; Baoli Zhu; Forest Rohwer
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
PLoS computational biology 2009;5(12):e1000593.
2009: Forest Rohwer; David Prangishvili; Debbie Lindell
Roles of viruses in the environment.
Environmental microbiology 2009;11(11):2771-4.
2009: Francisco Rodriguez-Valera; Ana-Belen Martin-Cuadrado; Beltran Rodriguez-Brito; Lejla Pasić; Tron Frede Thingstad; Forest Rohwer; Alex Mira
Explaining microbial population genomics through phage predation.
Nature reviews. Microbiology 2009;7(11):828-36.
2009: Florent Angly; Merry Youle; Bahador Nosrat; Shailaja Srinagesh; Beltran Rodriguez-Brito; Patrick McNairnie; Gordafaried Deyanat-Yazdi; Mya Breitbart; Forest Rohwer
Genomic analysis of multiple Roseophage SIO1 strains.
Environmental microbiology 2009;11(11):2863-73.
2009: Itai Sharon; Ariella Alperovitch; Forest Rohwer; Matthew Haynes; Fabian Glaser; Nof Atamna-Ismaeel; Ron Y Pinter; Frédéric Partensky; Eugene V Koonin; Yuri I Wolf; Nathan Nelson; Oded Béjà
Photosystem I gene cassettes are present in marine virus genomes.
Nature 2009;461(7261):258-62.
2009: Rebecca Vega Thurber; Dana Willner-Hall; Beltran Rodriguez-Mueller; Christelle Desnues; Robert A Edwards; Florent Angly; Elizabeth Dinsdale; Linda Kelly; Forest Rohwer
Metagenomic analysis of stressed coral holobionts.
Environmental microbiology 2009;11(8):2148-63.
2009: Dana Willner; Rebecca Vega Thurber; Forest Rohwer
Metagenomic signatures of 86 microbial and viral metagenomes.
Environmental microbiology 2009;11(7):1752-66.
2009: Forest Rohwer; Rebecca Vega Thurber
Viruses manipulate the marine environment.
Nature 2009;459(7244):207-12.
2009: Katie Barott; Jennifer Smith; Elizabeth Dinsdale; Mark Hatay; Stuart Sandin; Forest Rohwer
Hyperspectral and physiological analyses of coral-algal interactions.
PloS one 2009;4(11):e8043.
2009: Lejla Pasić; Beltran Rodriguez-Mueller; Ana-Belen Martin-Cuadrado; Alex Mira; Forest Rohwer; Francisco Rodriguez-Valera
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber.
BMC genomics 2009;10():570.
2009: Dana Willner; Mike Furlan; Matthew Haynes; Robert Schmieder; Florent Angly; Joas Silva; Sassan Tammadoni; Bahador Nosrat; Douglas Conrad; Forest Rohwer
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals.
PloS one 2009;4(10):e7370.
2009: Rebecca V Thurber; Matthew Haynes; Mya Breitbart; Linda Wegley; Forest Rohwer
Laboratory procedures to generate viral metagenomes.
Nature protocols 2009;4(4):470-83.
2009: Mya Breitbart; Ana Hoare; Anthony Nitti; Janet Siefert; Matthew Haynes; Elizabeth Dinsdale; Robert Edwards; Valeria Souza; Forest Rohwer; David Hollander
Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico.
Environmental microbiology 2009;11(1):16-34.
2008: Rebecca L Vega Thurber; Katie L Barott; Dana Hall; Hong Liu; Beltran Rodriguez-Mueller; Christelle Desnues; Robert A Edwards; Matthew Haynes; Florent Angly; Linda Wegley; Forest Rohwer
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(47):18413-8.
2008: Elizabeth A Dinsdale; Forest Rohwer
Dissecting microbial employment.
Nature biotechnology 2008;26(9):997-8.
2008: Kristen L Marhaver; Robert A Edwards; Forest Rohwer
Viral communities associated with healthy and bleaching corals.
Environmental microbiology 2008;10(9):2277-86.
2008: Mya Breitbart; Matthew Haynes; Scott Kelley; Florent Angly; Robert A Edwards; Ben Felts; Joseph M Mahaffy; Jennifer Mueller; James Nulton; Steve Rayhawk; Beltran Rodriguez-Brito; Peter Salamon; Forest Rohwer
Viral diversity and dynamics in an infant gut.
Research in microbiology 2008;159(5):367-73.
2008: Elizabeth A Dinsdale; Robert A Edwards; Dana Hall; Florent Angly; Mya Breitbart; Jennifer M Brulc; Mike Furlan; Christelle Desnues; Matthew Haynes; Linlin Li; Lauren McDaniel; Mary Ann Moran; Karen E Nelson; Christina Nilsson; Robert Olson; John Paul; Beltran Rodriguez Brito; Yijun Ruan; Brandon K Swan; Rick Stevens; David L Valentine; Rebecca Vega Thurber; Linda Wegley; Bryan A White; Forest Rohwer
Functional metagenomic profiling of nine biomes.
Nature 2008;452(7187):629-32.
2008: Lutz Krause; Naryttza N Diaz; Alexander Goesmann; Scott Kelley; Tim W Nattkemper; Forest Rohwer; Robert A Edwards; Jens Stoye
Phylogenetic classification of short environmental DNA fragments.
Nucleic acids research 2008;36(7):2230-9.
2008: Christelle Desnues; Beltran Rodriguez-Brito; Steve Rayhawk; Scott Kelley; Tuong Tran; Matthew Haynes; Hong Liu; Mike Furlan; Linda Wegley; Betty Chau; Yijun Ruan; Dana Hall; Florent Angly; Robert A Edwards; Linlin Li; Rebecca Vega Thurber; R Pamela Reid; Janet Siefert; Valeria Souza; David L Valentine; Brandon K Swan; Mya Breitbart; Forest Rohwer
Biodiversity and biogeography of phages in modern stromatolites and thrombolites.
Nature 2008;452(7185):340-3.
2008: Victor Kunin; Shaomei He; Falk Warnecke; S Brook Peterson; Hector Garcia Martin; Matthew Haynes; Natalia Ivanova; Linda L Blackall; Mya Breitbart; Forest Rohwer; Katherine D McMahon; Philip Hugenholtz
A bacterial metapopulation adapts locally to phage predation despite global dispersal.
Genome research 2008;18(2):293-7.
2008: L McDaniel; Mya Breitbart; Jennifer Mobberley; Amy Long; Matthew Haynes; Forest Rohwer; John H Paul
Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression.
PloS one 2008;3(9):e3263.
2008: Susannah G Tringe; Tao Zhang; Xuguo Liu; Yiting Yu; Wah Heng Lee; Jennifer Yap; Fei Yao; Sim Tiow Suan; Seah Keng Ing; Matthew Haynes; Forest Rohwer; Chia Lin Wei; Patrick Tan; James Bristow; Edward M Rubin; Yijun Ruan
The airborne metagenome in an indoor urban environment.
PloS one 2008;3(4):e1862.
2008: Elizabeth A Dinsdale; Olga Pantos; Steven Smriga; Robert A Edwards; Florent Angly; Linda Wegley; Mark Hatay; Dana Hall; Elysa Brown; Matthew Haynes; Lutz Krause; Enric Sala; Stuart A Sandin; Rebecca Vega Thurber; Bette L Willis; Farooq Azam; Nancy Knowlton; Forest Rohwer
Microbial ecology of four coral atolls in the Northern Line Islands.
PloS one 2008;3(2):e1584.
2008: Stuart A Sandin; Jennifer E Smith; Edward E Demartini; Elizabeth A Dinsdale; Simon D Donner; Alan M Friedlander; Talina Konotchick; Machel Malay; James E Maragos; David Obura; Olga Pantos; Gustav Paulay; Morgan Richie; Forest Rohwer; Robert E Schroeder; Sheila Walsh; Jeremy B C Jackson; Nancy Knowlton; Enric Sala
Baselines and degradation of coral reefs in the Northern Line Islands.
PloS one 2008;3(2):e1548.
2007: Linda Wegley; Robert Edwards; Beltran Rodriguez-Brito; Hong Liu; Forest Rohwer
Metagenomic analysis of the microbial community associated with the coral Porites astreoides.
Environmental microbiology 2007;9(11):2707-19.
2007: Noah Fierer; Mya Breitbart; James Nulton; Peter Salamon; Catherine Lozupone; Ryan Jones; Michael Robeson; Robert A Edwards; Ben Felts; Steve Rayhawk; Rob Knight; Forest Rohwer; Robert B Jackson
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.
Applied and environmental microbiology 2007;73(21):7059-66.
2007: J Michael Beman; Kathryn J Roberts; Linda Wegley; Forest Rohwer; Christopher A Francis
Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals.
Applied and environmental microbiology 2007;73(17):5642-7.
2007: Karl Heinz Hoffmann; Beltran Rodriguez-Brito; Mya Breitbart; David Bangor; Florent Angly; Ben Felts; James Nulton; Forest Rohwer; Peter Salamon
Power law rank-abundance models for marine phage communities.
FEMS microbiology letters 2007;273(2):224-8.
2007: Veronica Casas; Forest Rohwer
Phage metagenomics.
Methods in enzymology 2007;421():259-68.
2007: Forest Rohwer
Real-time microbial ecology.
Environmental microbiology 2007;9(1):10.
2006: Florent Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; James Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis Suttle; Forest Rohwer
The marine viromes of four oceanic regions.
PLoS biology 2006;4(11):e368.
2006: Linda Wegley; Pamela Mosier-Boss; Stephen Lieberman; John Andrews; Amanda Graff-Baker; Forest Rohwer
Rapid estimation of microbial numbers in water using bulk fluorescence.
Environmental microbiology 2006;8(10):1775-82.
2006: Veronica Casas; Jon H Miyake; Heather Balsley; Julie Roark; Serena Telles; Steven Leeds; Ivan Zurita; Mya Breitbart; Doug Bartlett; Farooq Azam; Forest Rohwer
Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California.
FEMS microbiology letters 2006;261(1):141-9.
2006: Lutz Krause; Naryttza N Diaz; Daniela Bartels; Robert A Edwards; Alfred Pühler; Forest Rohwer; Folker Meyer; Jens Stoye
Finding novel genes in bacterial communities isolated from the environment.
Bioinformatics (Oxford, England) 2006;22(14):e281-9.
2006: Jennifer E Smith; Morrigan Shaw; Rob A Edwards; David Obura; Olga Pantos; Enric Sala; Stuart A Sandin; Steven Smriga; Mark Hatay; Forest Rohwer
Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality.
Ecology letters 2006;9(7):835-45.
2006: Robert A Edwards; Beltran Rodriguez-Brito; Linda Wegley; Matthew Haynes; Mya Breitbart; Dean M Peterson; Martin O Saar; Scott Alexander; E Calvin Alexander; Forest Rohwer
Using pyrosequencing to shed light on deep mine microbial ecology.
BMC genomics 2006;7():57.
2006: Beltran Rodriguez-Brito; Forest Rohwer; Robert A Edwards
An application of statistics to comparative metagenomics.
BMC bioinformatics 2006;7():162.
2006: Yanan Yu; Mya Breitbart; Pat McNairnie; Forest Rohwer
FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries.
BMC bioinformatics 2006;7():57.
2006: Tao Zhang; Mya Breitbart; Wah Heng Lee; Jin-Quan Run; Chia-Lin Wei; Shirlena Wee Ling Soh; Martin L Hibberd; Edison Liu; Forest Rohwer; Yijun Ruan
RNA viral community in human feces: prevalence of plant pathogenic viruses.
PLoS biology 2006;4(1):e3.
2005: Mya Breitbart; Forest Rohwer
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing.
BioTechniques 2005;39(5):729-36.
2005: Mya Breitbart; Forest Rohwer
Here a virus, there a virus, everywhere the same virus?
Trends in microbiology 2005;13(6):278-84.
2005: John H Paul; Shannon J Williamson; Amy Long; R Nathan Authement; David E John; Anca M Segall; Forest Rohwer; Matthew Androlewicz; Stacey Patterson
Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia.
Applied and environmental microbiology 2005;71(6):3311-20.
2005: Robert A Edwards; Forest Rohwer
Viral metagenomics.
Nature reviews. Microbiology 2005;3(6):504-10.
2005: Alexandra Purdy; Forest Rohwer; Rob Edwards; Farooq Azam; Douglas H Bartlett
A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains.
Journal of bacteriology 2005;187(9):2992-3001.
2005: Matthew B Sullivan; Maureen L Coleman; Peter R Weigele; Forest Rohwer; Sallie W Chisholm
Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.
PLoS biology 2005;3(5):e144.
2005: Sankar Adhya; Lindsay W Black; David I Friedman; Graham F Hatfull; Kenneth Kreuzer; Carl R Merril; Ariella Oppenheim; Forest Rohwer; Ry Young
2004 ASM Conference on the New Phage Biology: the 'Phage Summit'.
Molecular microbiology 2005;55(5):1300-14.
2005: Mya Breitbart; Ranjeet Bhagooli; Sean Griffin; Ian Johnston; Forest Rohwer
Microbial communities associated with skeletal tumors on Porites compressa.
FEMS microbiology letters 2005;243(2):431-6.
2005: Florent Angly; Beltran Rodriguez-Brito; David Bangor; Pat McNairnie; Mya Breitbart; Peter Salamon; Ben Felts; James Nulton; Joseph M Mahaffy; Forest Rohwer
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
BMC bioinformatics 2005;6():41.
2004: Veronica Casas; David I Kline; Linda Wegley; Yanan Yu; Mya Breitbart; Forest Rohwer
Widespread association of a Rickettsiales-like bacterium with reef-building corals.
Environmental microbiology 2004;6(11):1137-48.
2004: Emiko Sano; Suzanne Carlson; Linda Wegley; Forest Rohwer
Movement of viruses between biomes.
Applied and environmental microbiology 2004;70(10):5842-6.
2004: Debbie Lindell; Matthew B Sullivan; Zackary I Johnson; Andrew C Tolonen; Forest Rohwer; Sallie W Chisholm
Transfer of photosynthesis genes to and from Prochlorococcus viruses.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(30):11013-8.
2004: Mya Breitbart; Jon H Miyake; Forest Rohwer
Global distribution of nearly identical phage-encoded DNA sequences.
FEMS microbiology letters 2004;236(2):249-56.
2004: Mya Breitbart; Ben Felts; Scott Kelley; Joseph M Mahaffy; James Nulton; Peter Salamon; Forest Rohwer
Diversity and population structure of a near-shore marine-sediment viral community.
Proceedings. Biological sciences / The Royal Society 2004;271(1539):565-74.
2004: Mya Breitbart; Linda Wegley; Steven Leeds; Tom Schoenfeld; Forest Rohwer
Phage community dynamics in hot springs.
Applied and environmental microbiology 2004;70(3):1633-40.
2003: Victor Seguritan; I-Wei Feng; Forest Rohwer; Mark Swift; Anca M Segall
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C.
Journal of bacteriology 2003;185(21):6434-47.
2003: Nancy Knowlton; Forest Rohwer
Multispecies microbial mutualisms on coral reefs: the host as a habitat.
The American naturalist 2003;162(4 Suppl):S51-62.
2003: Mya Breitbart; Ian Hewson; Ben Felts; Joseph M Mahaffy; James Nulton; Peter Salamon; Forest Rohwer
Metagenomic analyses of an uncultured viral community from human feces.
Journal of bacteriology 2003;185(20):6220-3.
2003: Pamela A Mosier-Boss; SH Lieberman; J M Andrews; Forest Rohwer; Linda Wegley; M Breitbart
Use of fluorescently labeled phage in the detection and identification of bacterial species.
Applied spectroscopy 2003;57(9):1138-44.
2003: Michelle M Fung; Forest Rohwer; Kathleen L McGuire
IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells.
Cellular signalling 2003;15(6):625-36.
2003: Forest Rohwer
Global phage diversity.
Cell 2003;113(2):141.
2002: John H Paul; Matthew B Sullivan; Anca M Segall; Forest Rohwer
Marine phage genomics.
Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology 2002;133(4):463-76.
2002: Mya Breitbart; Peter Salamon; Bjarne Andresen; Joseph M Mahaffy; Anca M Segall; David Mead; Farooq Azam; Forest Rohwer
Genomic analysis of uncultured marine viral communities.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(22):14250-5.
2002: Forest Rohwer; Rob Edwards
The Phage Proteomic Tree: a genome-based taxonomy for phage.
Journal of bacteriology 2002;184(16):4529-35.
2002: Ake Hagström; Thomas Pommier; Forest Rohwer; Karin Simu; Willem Stolte; Dominika Svensson; Ulla Li Zweifel
Use of 16S ribosomal DNA for delineation of marine bacterioplankton species.
Applied and environmental microbiology 2002;68(7):3628-33.
2001: Forest Rohwer; Victor Seguritan; D H Choi; Anca M Segall; Farooq Azam
Production of shotgun libraries using random amplification.
BioTechniques 2001;31(1):108-12, 114-6, 118.
2001: Victor Seguritan; Forest Rohwer
FastGroup: a program to dereplicate libraries of 16S rDNA sequences.
BMC bioinformatics 2001;2():9.
2000: Forest Rohwer; Farooq Azam
Detection of DNA damage in prokaryotes by terminal deoxyribonucleotide transferase-mediated dUTP nick end labeling.
Applied and environmental microbiology 2000;66(3):1001-6.
1999: M Iacobelli; Forest Rohwer; P Shanahan; J A Quiroz; Kathleen L McGuire
IL-2-mediated cell cycle progression and inhibition of apoptosis does not require NF-kappa B or activating protein-1 activation in primary human T cells.
Journal of immunology (Baltimore, Md. : 1950) 1999;162(6):3308-15.