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Chiara Romualdi

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Daniela Cimino; Christian Damasco; Michele De Bortoli; Cristiano De Pitta; Marco Forni; Gerolamo Lanfranchi; Francesca Orso; Elisa Penna; Eva Pinatel; Riccardo Ponzone; Paolo Provero; Elena Quaglino; Chiara Romualdi; Nicoletta Biglia; Cathrin Brisken; Silvia Casara; Matteo Zampini; Daniela Taverna
miR148b is a major coordinator of breast cancer progression in a relapse-associated microRNA signature by targeting ITGA5, ROCK1, PIK3CA, NRAS, and CSF1.
Miriam Frangini; Elisa Franzolin; Paolo Laveder; Vera Bianchi; Francesco Chemello; Chiara Romualdi; Chiara Rampazzo
Synthesis of mitochondrial DNA precursors during myogenesis, an analysis in purified C2C12 myotubes.
Paolo Martini; M Sofia Massa; Monica Chiogna; Gabriele Sales; Chiara Romualdi
Along signal paths: an empirical gene set approach exploiting pathway topology.

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All Publications

2013: Daniela Cimino; Christian Damasco; Michele De Bortoli; Cristiano De Pitta; Marco Forni; Gerolamo Lanfranchi; Francesca Orso; Elisa Penna; Eva Pinatel; Riccardo Ponzone; Paolo Provero; Elena Quaglino; Chiara Romualdi; Nicoletta Biglia; Cathrin Brisken; Silvia Casara; Matteo Zampini; Daniela Taverna
miR148b is a major coordinator of breast cancer progression in a relapse-associated microRNA signature by targeting ITGA5, ROCK1, PIK3CA, NRAS, and CSF1.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2013;27(3):1223-35.
2013: Miriam Frangini; Elisa Franzolin; Paolo Laveder; Vera Bianchi; Francesco Chemello; Chiara Romualdi; Chiara Rampazzo
Synthesis of mitochondrial DNA precursors during myogenesis, an analysis in purified C2C12 myotubes.
The Journal of biological chemistry 2013;288(8):5624-35.
2013: Paolo Martini; M Sofia Massa; Monica Chiogna; Gabriele Sales; Chiara Romualdi
Along signal paths: an empirical gene set approach exploiting pathway topology.
Nucleic acids research 2013;41(1):e19.
2013: Sergio Marchini; Rodolfo Milani; Ilaria Fuso Nerini; Luca Porcu; Michela Romano; Chiara Romualdi; Mauro Signorelli; Valter Torri; Alberto Zambelli; Silvana di Giandomenico; Luca Beltrame; Giorgio Cattoretti; Duccio Cavalieri; giovanna chiorino; Luca Clivio; Robert Fruscio; Costantino Mangioni; Maurizio D'Incalci
Resistance to platinum-based chemotherapy is associated with epithelial to mesenchymal transition in epithelial ovarian cancer.
European journal of cancer (Oxford, England : 1990) 2013;49(2):520-30.
2012: Massimiliano Calabrese; Alice Favaretto; Sara Alessio; Valentina Bernardi; Paola Perini; Valentina Poretto; Francesca Rinaldi; Chiara Romualdi; Paolo Gallo
Cortical lesion load associates with progression of disability in multiple sclerosis.
Brain : a journal of neurology 2012;135(Pt 10):2952-61.
2012: Andrea Bisognin; Stefania Bortoluzzi; Alessandro Coppe; Gabriele Sales; Chiara Romualdi
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).
Nucleic acids research 2012;40(Web Server issue):W13-21.
2012: Sarah Uboldi; Luca Beltrame; Enrica Calura; Duccio Cavalieri; giovanna chiorino; Daniela D'Angelo; Maurizio D'Incalci; Eugenio Erba; Ilaria Fuso Nerini; Sergio Marchini; Paola Ostano; Chiara Romualdi
A systems biology approach to characterize the regulatory networks leading to trabectedin resistance in an in vitro model of myxoid liposarcoma.
PloS one 2012;7(4):e35423.
2012: Gabriele Sales; Enrica Calura; Duccio Cavalieri; Chiara Romualdi
graphite - a Bioconductor package to convert pathway topology to gene network.
BMC bioinformatics 2012;13():20.
2011: Lucia Tombolan; Angelica Zin; Francesca Orso; Paolo Pinton; Chiara Romualdi; Angelo Rosolen; Daniela Taverna; Rita Alaggio; Gianni Bisogno; Massimo Bonora; Silvia Casara; Cristiano De Pitta; Carlotta Giorgi; Vincenza Guzzardo; Gerolamo Lanfranchi
High IGFBP2 expression correlates with tumor severity in pediatric rhabdomyosarcoma.
The American journal of pathology 2011;179(5):2611-24.
2011: Gabriele Sales; Chiara Romualdi
parmigene--a parallel R package for mutual information estimation and gene network reconstruction.
Bioinformatics (Oxford, England) 2011;27(13):1876-7.
2011: Marta Biasiolo; Andrea Bisognin; Luca Agnelli; Alessandro Coppe; Marta Lionetti; Antonino Neri; Chiara Romualdi; Gabriele Sales; Katia Todoerti; Stefania Bortoluzzi
Impact of host genes and strand selection on miRNA and miRNA* expression.
PloS one 2011;6(8):e23854.
2011: Paolo Martini; Davide Risso; Gabriele Sales; Chiara Romualdi; Gerolamo Lanfranchi; Stefano Cagnin
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.
BMC bioinformatics 2011;12():92.
2010: Gabriele Sales; Alessandro Coppe; Andrea Bisognin; Marta Biasiolo; Stefania Bortoluzzi; Chiara Romualdi
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis.
Nucleic acids research 2010;38(Web Server issue):W352-9.
2010: Viviana Daidone; Elena Pontara; Chiara Romualdi; Maria G Cattini; Carla Scaroni; Nora Albiger; Antonio Pagnan; Alessandra Casonato
Microsatellite (GT)(n) is part of the von Willebrand factor (VWF) promoter region that influences the glucocorticoid-induced increase in VWF in Cushing's syndrome.
Thrombosis research 2010;125(6):e275-80.
2010: Daniela Segat; mauro cassaro; Emanuela Dazzo; Lucia Cavallini; Chiara Romualdi; Renato Salvador; Maria Pia Vitale; libero vitiello; Matteo Fassan; Massimo Rugge; Giovanni Zaninotto; Ermanno Ancona; Maurizio David Baroni
Pericentriolar material analyses in normal esophageal mucosa, Barrett's metaplasia and adenocarcinoma.
Histology and histopathology 2010;25(5):551-60.
2010: Gabriele Sales; Alessandro Coppe; Silvio Bicciato; Stefania Bortoluzzi; Chiara Romualdi
Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.
Nucleic acids research 2010;38(7):e97.
2010: Maria Sofia Massa; Monica Chiogna; Chiara Romualdi
Gene set analysis exploiting the topology of a pathway.
BMC systems biology 2010;4():121.
2009: Davide Risso; Maria Sofia Massa; Monica Chiogna; Chiara Romualdi
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.
Bioinformatics (Oxford, England) 2009;25(20):2685-91.
2009: Chiara Romualdi; alessandro Giuliani; Caterina Millino; Barbara Celegato; Romualdo Benigni; Gerolamo Lanfranchi
Correlation between gene expression and clinical data through linear and nonlinear principal components analyses: muscular dystrophies as case studies.
Omics : a journal of integrative biology 2009;13(3):173-84.
2009: Andrea Bisognin; Alessandro Coppe; Francesco Ferrari; Davide Risso; Chiara Romualdi; Silvio Bicciato; Stefania Bortoluzzi
A-MADMAN: annotation-based microarray data meta-analysis tool.
BMC bioinformatics 2009;10():201.
2009: Monica Chiogna; Maria Sofia Massa; Davide Risso; Chiara Romualdi
A comparison on effects of normalisations in the detection of differentially expressed genes.
BMC bioinformatics 2009;10():61.
2008: Alessandra Casonato; Viviana Daidone; Francesca Sartorello; Nora M E Albiger; Chiara Romualdi; Franco Mantero; Antonio Pagnan; Carla Scaroni
Polymorphisms in von Willebrand factor gene promoter influence the glucocorticoid-induced increase in von Willebrand factor: the lesson learned from Cushing syndrome.
British journal of haematology 2008;140(2):230-5.
2007: Nicola Vitulo; Alessandro Vezzi; Chiara Romualdi; Stefano Campanaro; Giorgio Valle
A global gene evolution analysis on Vibrionaceae family using phylogenetic profile.
BMC bioinformatics 2007;8 Suppl 1():S23.
2006: Luisa Nanni; Chiara Romualdi; Attilio Maseri; Gerolamo Lanfranchi
Differential gene expression profiling in genetic and multifactorial cardiovascular diseases.
Journal of molecular and cellular cardiology 2006;41(6):934-48.
2006: Paola Venier; Cristiano De Pitta; Alberto Pallavicini; Francesco Marsano; Laura Varotto; Chiara Romualdi; Francesco Dondero; Aldo Viarengo; Gerolamo Lanfranchi
Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution?
Mutation research 2006;602(1-2):121-34.
2006: Caterina Millino; Milena Bellin; Marina Fanin; Chiara Romualdi; Elena Pegoraro; Corrado Angelini; Gerolamo Lanfranchi
Expression profiling characterization of laminin alpha-2 positive MDC.
Biochemical and biophysical research communications 2006;350(2):345-51.
2006: Barbara Celegato; Daniele Capitanio; Mario Pescatori; Chiara Romualdi; Beniamina Pacchioni; stefano cagnin; Agnese Viganò; Luca Colantoni; Shajna Begum; Enzo Ricci; Robin Wait; Gerolamo Lanfranchi; Cecilia Gelfi
Parallel protein and transcript profiles of FSHD patient muscles correlate to the D4Z4 arrangement and reveal a common impairment of slow to fast fibre differentiation and a general deregulation of MyoD-dependent genes.
Proteomics 2006;6(19):5303-21.
2006: Cristiano De Pitta; Lucia Tombolan; Giada Albiero; Francesca Sartori; Chiara Romualdi; Giuseppe Jurman; Modesto Carli; Cesare Furlanello; Gerolamo Lanfranchi; Angelo Rosolen
Gene expression profiling identifies potential relevant genes in alveolar rhabdomyosarcoma pathogenesis and discriminates PAX3-FKHR positive and negative tumors.
International journal of cancer. Journal international du cancer 2006;118(11):2772-81.
2006: Anna Raffaello; Paolo Laveder; Chiara Romualdi; Camilla Bean; Luana Toniolo; Elena Germinario; Aram Megighian; Daniela Danieli-Betto; Carlo Reggiani; Gerolamo Lanfranchi
Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling.
Physiological genomics 2006;25(1):60-74.
2006: Chiara Romualdi; Cristiano De Pitta; Lucia Tombolan; Stefania Bortoluzzi; Francesca Sartori; Angelo Rosolen; Gerolamo Lanfranchi
Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.
BMC genomics 2006;7():287.
2005: Cristiano De Pitta; Lucia Tombolan; Marta Campo Dell'Orto; Benedetta Accordi; Geertruy Te Kronnie; Chiara Romualdi; Nicola Vitulo; Giuseppe Basso; Gerolamo Lanfranchi
A leukemia-enriched cDNA microarray platform identifies new transcripts with relevance to the biology of pediatric acute lymphoblastic leukemia.
Haematologica 2005;90(7):890-8.
2005: Chiara Romualdi; Nicola Vitulo; Micky Del Favero; Gerolamo Lanfranchi
MIDAW: a web tool for statistical analysis of microarray data.
Nucleic acids research 2005;33(Web Server issue):W644-9.
2005: Stefania Bortoluzzi; Andrea Bisognin; Chiara Romualdi; Gian Antonio Danieli
Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling.
Gene 2005;348():65-71.
2005: Alessandro Vezzi; Stefano Campanaro; Michela D'Angelo; Francesca Simonato; Nicola Vitulo; Federico M Lauro; Alessandro Cestaro; G Malacrida; Barbara Simionati; Nicola Cannata; Chiara Romualdi; Douglas H Bartlett; Giorgio Valle
Life at depth: Photobacterium profundum genome sequence and expression analysis.
Science (New York, N.Y.) 2005;307(5714):1459-61.
2005: Davide Campagna; Chiara Romualdi; Nicola Vitulo; Micky Del Favero; Matej Lexa; Nicola Cannata; Giorgio Valle
RAP: a new computer program for de novo identification of repeated sequences in whole genomes.
Bioinformatics (Oxford, England) 2005;21(5):582-8.
2004: Daniela Basso; Caterina Millino; Eliana Greco; Chiara Romualdi; Paola Fogar; Anna Valerio; Milena Bellin; Carlo-Federico Zambon; Filippo Navaglia; N Dussini; Angelo Avogaro; Sergio Pedrazzoli; Gerolamo Lanfranchi; Mario Plebani
Altered glucose metabolism and proteolysis in pancreatic cancer cell conditioned myoblasts: searching for a gene expression pattern with a microarray analysis of 5000 skeletal muscle genes.
Gut 2004;53(8):1159-66.
2003: Chiara Romualdi; Silvia Trevisan; Barbara Celegato; Germano Costa; Gerolamo Lanfranchi
Improved detection of differentially expressed genes in microarray experiments through multiple scanning and image integration.
Nucleic acids research 2003;31(23):e149.
2003: Stefania Bortoluzzi; Chiara Romualdi; Andrea Bisognin; Gian Antonio Danieli
Disease genes and intracellular protein networks.
Physiological genomics 2003;15(3):223-7.
2003: Chiara Romualdi; Stefano Campanaro; Davide Campagna; Barbara Celegato; Nicola Cannata; Stefano Toppo; Giorgio Valle; Gerolamo Lanfranchi
Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification.
Human molecular genetics 2003;12(8):823-36.
2003: Stefano Toppo; Nicola Cannata; Paolo Fontana; Chiara Romualdi; Paolo Laveder; Emanuela Bertocco; Gerolamo Lanfranchi; Giorgio Valle
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.
Bioinformatics (Oxford, England) 2003;19(5):661-2.
2003: Chiara Romualdi; Stefania Bortoluzzi; Fabio D'Alessi; Gian Antonio Danieli
IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.
Physiological genomics 2003;12(2):159-62.
2002: Stefano Campanaro; Chiara Romualdi; Marina Fanin; Barbara Celegato; Beniamina Pacchioni; Silvia Trevisan; Paolo Laveder; Cristiano De Pitta; Elena Pegoraro; Yukiko K Hayashi; Giorgio Valle; Corrado Angelini; Gerolamo Lanfranchi
Gene expression profiling in dysferlinopathies using a dedicated muscle microarray.
Human molecular genetics 2002;11(26):3283-98.
2002: Nicola Cannata; Stefano Toppo; Chiara Romualdi; Giorgio Valle
Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices.
Bioinformatics (Oxford, England) 2002;18(8):1102-8.
2001: Stefania Bortoluzzi; Fabio D'Alessi; Chiara Romualdi; Gian Antonio Danieli
Differential expression of genes coding for ribosomal proteins in different human tissues.
Bioinformatics (Oxford, England) 2001;17(12):1152-7.
2001: Chiara Romualdi; Stefania Bortoluzzi; Gian Antonio Danieli
Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests.
Human molecular genetics 2001;10(19):2133-41.
2000: Stefania Bortoluzzi; Fabio D'Alessi; Chiara Romualdi; Gian Antonio Danieli
The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach.
Genome research 2000;10(3):344-9.
1997: G Masarotto; Chiara Romualdi
Probability of conception on different days of the menstrual cycle: an ongoing exercise.
Advances in contraception : the official journal of the Society for the Advancement of Contraception 1997;13(2-3):105-15.