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Noah Rosenberg

Research Profile

Occupations

Genetics, Population

Concepts & Ideas

Chemicals & Drugs

Microsatellite Repeats

Physiology

Genes & Molecular Sequences

Living Beings

Heterozygote

Phenomena

Activities & Behaviors

Computer Simulation

Disorders

Genetic Markers

Co-author Network

Publications

TOP 3
Naama M Kopelman; Olivier Gascuel; Lewi Stone; Noah A Rosenberg
The behavior of admixed populations in neighbor-joining inference of population trees.
Chaolong Wang; Kari B Schroeder; Noah A Rosenberg
A maximum-likelihood method to correct for allelic dropout in microsatellite data with no replicate genotypes.
Trevor Pemberton; Noah A Rosenberg; Chris Tyler-Smith; Jack Ballantyne; John W Belmont; Sunju Choi; Erin K Hanson; Fang-Yuan Li; Niyati U Mehta; Pragna I Patel
Impact of restricted marital practices on genetic variation in an endogamous Gujarati group.

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All Publications

2013: Naama M Kopelman; Olivier Gascuel; Lewi Stone; Noah A Rosenberg
The behavior of admixed populations in neighbor-joining inference of population trees.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2013;():273-84.
2012: Chaolong Wang; Kari B Schroeder; Noah A Rosenberg
A maximum-likelihood method to correct for allelic dropout in microsatellite data with no replicate genotypes.
Genetics 2012;192(2):651-69.
2012: Trevor Pemberton; Noah A Rosenberg; Chris Tyler-Smith; Jack Ballantyne; John W Belmont; Sunju Choi; Erin K Hanson; Fang-Yuan Li; Niyati U Mehta; Pragna I Patel
Impact of restricted marital practices on genetic variation in an endogamous Gujarati group.
American journal of physical anthropology 2012;149(1):92-103.
2012: Trevor J Pemberton; Noah A Rosenberg; Devin Absher; Marcus W Feldman; Richard M Myers; Jun Z Li
Genomic patterns of homozygosity in worldwide human populations.
American journal of human genetics 2012;91(2):275-92.
2012: Chaolong Wang; Sebastian Zöllner; Noah A Rosenberg
A quantitative comparison of the similarity between genes and geography in worldwide human populations.
PLoS genetics 2012;8(8):e1002886.
2012: Ethan M Jewett; Noah A Rosenberg; Matthew Zawistowski; Sebastian Zöllner
A coalescent model for genotype imputation.
Genetics 2012;191(4):1239-55.
2012: Laura J Helmkamp; Ethan M Jewett; Noah A Rosenberg
Improvements to a class of distance matrix methods for inferring species trees from gene trees.
Journal of computational biology : a journal of computational molecular cell biology 2012;19(6):632-49.
2012: Ethan M Jewett; Noah A Rosenberg
iGLASS: an improvement to the GLASS method for estimating species trees from gene trees.
Journal of computational biology : a journal of computational molecular cell biology 2012;19(3):293-315.
2012: F Anthony San Lucas; Noah A Rosenberg; Paul Scheet
Haploscope: a tool for the graphical display of haplotype structure in populations.
Genetic epidemiology 2012;36(1):17-21.
2011: Noah A Rosenberg
A population-genetic perspective on the similarities and differences among worldwide human populations.
Human biology 2011;83(6):659-84.
2011: Lucy Huang; Muntaser Ibrahim; Mattias Jakobsson; Thomas Nyambo; Sabah Omar; Trevor J Pemberton; Jonathan K Pritchard; Sarah A Tishkoff; Noah A Rosenberg
Haplotype variation and genotype imputation in African populations.
Genetic epidemiology 2011;35(8):766-80.
2011: Sohini Ramachandran; Noah A Rosenberg
A test of the influence of continental axes of orientation on patterns of human gene flow.
American journal of physical anthropology 2011;146(4):515-29.
2011: Simina M Boca; Noah A Rosenberg
Mathematical properties of Fst between admixed populations and their parental source populations.
Theoretical population biology 2011;80(3):208-16.
2011: Michael DeGiorgio; James H Degnan; Noah A Rosenberg
Coalescence-time distributions in a serial founder model of human evolutionary history.
Genetics 2011;189(2):579-93.
2011: Zachary A Szpiech; Noah A Rosenberg
On the size distribution of private microsatellite alleles.
Theoretical population biology 2011;80(2):100-13.
2011: Zhenhua Yang; Mariana Rosenthal; Noah A Rosenberg; Sarah Talarico; Lixin Zhang; Carl Marrs; Vibeke Thomsen; Troels Lillebaek; Aase B Andersen
How dormant is Mycobacterium tuberculosis during latency? A study integrating genomics and molecular epidemiology.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2011;11(5):1164-7.
2011: Erkan Ozge Buzbas; Paul Joyce; Noah A Rosenberg
Inference on the strength of balancing selection for epistatically interacting loci.
Theoretical population biology 2011;79(3):102-13.
2011: Cuong V Than; Noah A Rosenberg
Consistency properties of species tree inference by minimizing deep coalescences.
Journal of computational biology : a journal of computational molecular cell biology 2011;18(1):1-15.
2010: Michael DeGiorgio; Ivana Jankovic; Noah A Rosenberg
Unbiased estimation of gene diversity in samples containing related individuals: exact variance and arbitrary ploidy.
Genetics 2010;186(4):1367-87.
2010: Trevor J Pemberton; Chaolong Wang; Jun Z Li; Noah A Rosenberg
Inference of unexpected genetic relatedness among individuals in HapMap Phase III.
American journal of human genetics 2010;87(4):457-64.
2010: Ester Borràs; Marta Pineda; Ignacio Blanco; Ethan M Jewett; Fei Wang; Alex Teulé; Trinidad Caldés; Miguel Urioste; Cristina Martínez-Bouzas; Joan Brunet; Judith Balmaña; Asunción Torres; Teresa Ramón y Cajal; Judit Sanz; Lucía Pérez-Cabornero; Sergi Castellví-Bel; Angel Alonso; Angel Lanas; Sara González; Víctor Moreno; Stephen B Gruber; Noah A Rosenberg; Bhramar Mukherjee; Conxi Lázaro; Gabriel Capellá
MLH1 founder mutations with moderate penetrance in Spanish Lynch syndrome families.
Cancer research 2010;70(19):7379-91.
2010: Ivana Jankovic; Bridgett M vonHoldt; Noah A Rosenberg
Heterozygosity of the Yellowstone wolves.
Molecular ecology 2010;19(16):3246-9.
2010: Noah A Rosenberg; Lucy Huang; Ethan M Jewett; Zachary A Szpiech; Ivana Jankovic; Michael Boehnke
Genome-wide association studies in diverse populations.
Nature reviews. Genetics 2010;11(5):356-66.
2010: Noah A Rosenberg; James H Degnan
Coalescent histories for discordant gene trees and species trees.
Theoretical population biology 2010;77(3):145-51.
2010: Jack T Mosher; Trevor J Pemberton; Kristina Harter; Chaolong Wang; Erkan O Buzbas; Petr Dvorak; Carlos Simón; Sean J Morrison; Noah A Rosenberg
Lack of population diversity in commonly used human embryonic stem-cell lines.
The New England journal of medicine 2010;362(2):183-5.
2010: Chaolong Wang; Zachary A Szpiech; James H Degnan; Mattias Jakobsson; Trevor J Pemberton; John Hardy; Andrew Singleton; Noah A Rosenberg
Comparing spatial maps of human population-genetic variation using Procrustes analysis.
Statistical applications in genetics and molecular biology 2010;9():Article 13.
2009: Lucy Huang; Chaolong Wang; Noah A Rosenberg
The relationship between imputation error and statistical power in genetic association studies in diverse populations.
American journal of human genetics 2009;85(5):692-8.
2009: Michael DeGiorgio; Mattias Jakobsson; Noah A Rosenberg
Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(38):16057-62.
2009: Noah A Rosenberg; Jenna M Vanliere
Replication of genetic associations as pseudoreplication due to shared genealogy.
Genetic epidemiology 2009;33(6):479-87.
2009: James H Degnan; Noah A Rosenberg
Gene tree discordance, phylogenetic inference and the multispecies coalescent.
Trends in ecology & evolution 2009;24(6):332-40.
2009: Kari B Schroeder; Mattias Jakobsson; Michael H Crawford; Theodore G Schurr; Simina M Boca; Donald F Conrad; Raul Y Tito; Ludmila P Osipova; Larissa A Tarskaia; Sergey I Zhadanov; Jeffrey D Wall; Jonathan Pritchard; Ripan Malhi; David G Smith; Noah A Rosenberg
Haplotypic background of a private allele at high frequency in the Americas.
Molecular biology and evolution 2009;26(5):995-1016.
2009: Michael DeGiorgio; Noah A Rosenberg
An unbiased estimator of gene diversity in samples containing related individuals.
Molecular biology and evolution 2009;26(3):501-12.
2009: James H Degnan; Michael DeGiorgio; David Bryant; Noah A Rosenberg
Properties of consensus methods for inferring species trees from gene trees.
Systematic biology 2009;58(1):35-54.
2009: Lucy Huang; Yun Li; Andrew Singleton; John Hardy; Goncalo Abecasis; Noah A Rosenberg; Paul Scheet
Genotype-imputation accuracy across worldwide human populations.
American journal of human genetics 2009;84(2):235-50.
2009: Trevor J Pemberton; Conner I Sandefur; Mattias Jakobsson; Noah A Rosenberg
Sequence determinants of human microsatellite variability.
BMC genomics 2009;10():612.
2009: Naama M Kopelman; Lewi Stone; Chaolong Wang; Dov Gefel; Marcus W Feldman; Jossi Hillel; Noah A Rosenberg
Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations.
BMC genetics 2009;10():80.
2008: Sohini Ramachandran; Noah A Rosenberg; Marcus W Feldman; John Wakeley
Population differentiation and migration: coalescence times in a two-sex island model for autosomal and X-linked loci.
Theoretical population biology 2008;74(4):291-301.
2008: Zachary A Szpiech; Mattias Jakobsson; Noah A Rosenberg
ADZE: a rarefaction approach for counting alleles private to combinations of populations.
Bioinformatics (Oxford, England) 2008;24(21):2498-504.
2008: Noah A Rosenberg; Mattias Jakobsson
The relationship between homozygosity and the frequency of the most frequent allele.
Genetics 2008;179(4):2027-36.
2008: Jenna M VanLiere; Noah A Rosenberg
Mathematical properties of the r2 measure of linkage disequilibrium.
Theoretical population biology 2008;74(1):130-7.
2008: Trevor Pemberton; Mattias Jakobsson; D F Conrad; G Coop; J D Wall; Jonathan K Pritchard; Pragna I Patel; Noah A Rosenberg
Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India.
Annals of human genetics 2008;72(Pt 4):535-46.
2008: J Michael Macpherson; Josefa González; Daniela M Witten; Jerel C Davis; Noah A Rosenberg; Aaron E Hirsh; Dmitri Petrov
Nonadaptive explanations for signatures of partial selective sweeps in Drosophila.
Molecular biology and evolution 2008;25(6):1025-42.
2008: Olivier François; Michael G B Blum; Mattias Jakobsson; Noah A Rosenberg
Demographic history of european populations of Arabidopsis thaliana.
PLoS genetics 2008;4(5):e1000075.
2008: Mattias Jakobsson; Sonja W Scholz; Paul Scheet; J Raphael Gibbs; Jenna M VanLiere; Hon-Chung Fung; Zachary A Szpiech; James H Degnan; Kai Wang; Rita Guerreiro; Jose M Bras; Jennifer C Schymick; Dena G Hernandez; Bryan Joseph Traynor; Javier Simon-Sanchez; Mar Matarin; Angela Britton; Joyce van de Leemput; Ian Rafferty; Maja Bucan; Howard M Cann; John Hardy; Noah A Rosenberg; Andrew Singleton
Genotype, haplotype and copy-number variation in worldwide human populations.
Nature 2008;451(7181):998-1003.
2008: Noah A Rosenberg; Randa Tao
Discordance of species trees with their most likely gene trees: the case of five taxa.
Systematic biology 2008;57(1):131-40.
2007: Kangyu Zhang; Noah A Rosenberg
On the genealogy of a duplicated microsatellite.
Genetics 2007;177(4):2109-22.
2007: Sijia Wang; Cecil M Lewis; Mattias Jakobsson; Sohini Ramachandran; Nicolas Ray; Gabriel Bedoya; Winston Rojas; Maria V Parra; Julio A Molina; Carla Gallo; Guido Mazzotti; Giovanni Poletti; Kim Hill; Ana M Hurtado; Damian Labuda; William Klitz; Ramiro Barrantes; Maria Cátira Bortolini; Francisco M Salzano; Maria-Luiza Petzl-Erler; Luiza T Tsuneto; Elena Llop; Francisco Rothhammer; Laurent Excoffier; Marcus W Feldman; Noah A Rosenberg; Andres Ruiz-Linares
Genetic variation and population structure in native Americans.
PLoS genetics 2007;3(11):e185.
2007: Mattias Jakobsson; Noah A Rosenberg
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.
Bioinformatics (Oxford, England) 2007;23(14):1801-6.
2007: Michael G B Blum; Noah A Rosenberg
Estimating the number of ancestral lineages using a maximum-likelihood method based on rejection sampling.
Genetics 2007;176(3):1741-57.
2007: Noah A Rosenberg; Michael G B Blum
Sampling properties of homozygosity-based statistics for linkage disequilibrium.
Mathematical biosciences 2007;208(1):33-47.
2007: Mattias Jakobsson; Noah A Rosenberg
The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species.
Theoretical population biology 2007;71(4):502-23.
2007: Lior David; Noah A Rosenberg; Uri Lavi; marcel salathe; Jossi Hillel
Genetic diversity and population structure inferred from the partially duplicated genome of domesticated carp, Cyprinus carpio L.
Genetics, selection, evolution : GSE 2007;39(3):319-40.
2007: K B Schroeder; Theodore G Schurr; J C Long; Noah A Rosenberg; Michael H Crawford; L A Tarskaia; Ludmila P Osipova; Sergey I Zhadanov; David Glenn Smith
A private allele ubiquitous in the Americas.
Biology letters 2007;3(2):218-23.
2007: Noah A Rosenberg
Counting coalescent histories.
Journal of computational biology : a journal of computational molecular cell biology 2007;14(3):360-77.
2007: Noah A Rosenberg
Statistical tests for taxonomic distinctiveness from observations of monophyly.
Evolution; international journal of organic evolution 2007;61(2):317-23.
2006: Noah A Rosenberg; Saurabh Mahajan; Catalina Gonzalez-Quevedo; Michael G B Blum; Laura Nino-Rosales; Vasiliki Ninis; Parimal Das; Madhuri Hegde; Laura M Molinari; Gladys Zapata; James L Weber; John W Belmont; Pragna I Patel
Low levels of genetic divergence across geographically and linguistically diverse populations from India.
PLoS genetics 2006;2(12):e215.
2006: Donald F Conrad; Mattias Jakobsson; Graham Coop; Xiaoquan Wen; Jeffrey D Wall; Noah A Rosenberg; Jonathan K Pritchard
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome.
Nature genetics 2006;38(11):1251-60.
2006: Noah A Rosenberg
Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives.
Annals of human genetics 2006;70(Pt 6):841-7.
2006: Noah A Rosenberg; Magnus Nordborg
A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations.
Genetics 2006;173(3):1665-78.
2006: James H Degnan; Noah A Rosenberg
Discordance of species trees with their most likely gene trees.
PLoS genetics 2006;2(5):e68.
2005: Noah A Rosenberg; Saurabh Mahajan; Sohini Ramachandran; Chengfeng Zhao; Jonathan K Pritchard; marcel salathe
Clines, clusters, and the effect of study design on the inference of human population structure.
PLoS genetics 2005;1(6):e70.
2005: Noah A Rosenberg
A sharp minimum on the mean number of steps taken in adaptive walks.
Journal of theoretical biology 2005;237(1):17-22.
2005: Noah A Rosenberg
Algorithms for selecting informative marker panels for population assignment.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(9):1183-201.
2005: Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; marcel salathe; L Luca Cavalli-Sforza
Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(44):15942-7.
2005: Magnus Nordborg; Tina T Hu; Yoko Ishino; Jinal Jhaveri; Christopher Toomajian; Honggang Zheng; Erica Bakker; Peter Calabrese; Jean Gladstone; Rana Goyal; Mattias Jakobsson; Sung Kim; Yuri Morozov; Badri Padhukasahasram; Vincent Plagnol; Noah A Rosenberg; Chitiksha Shah; Jeffrey D Wall; Jue Wang; Keyan Zhao; Theodore Kalbfleisch; Vincent Schulz; Martin Kreitman; Joy Bergelson
The pattern of polymorphism in Arabidopsis thaliana.
PLoS biology 2005;3(7):e196.
2005: Hideki Innan; Kangyu Zhang; Paul Marjoram; Simon Tavaré; Noah A Rosenberg
Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites.
Genetics 2005;169(3):1763-77.
2004: Noah A Rosenberg; Peter Calabrese
Polyploid and multilocus extensions of the Wahlund inequality.
Theoretical population biology 2004;66(4):381-91.
2004: Mark M Tanaka; Noah A Rosenberg; Peter M Small
The control of copy number of IS6110 in Mycobacterium tuberculosis.
Molecular biology and evolution 2004;21(12):2195-201.
2004: Sohini Ramachandran; Noah A Rosenberg; Lev Zhivotovsky; marcel salathe
Robustness of the inference of human population structure: a comparison of X-chromosomal and autosomal microsatellites.
Human genomics 2004;1(2):87-97.
2003: Richard Horton; Noah A Rosenberg; Jonathan K Pritchard; James L Weber; Howard M Cann; Kenneth K Kidd; Lev Zhivotovsky; marcel salathe
Read all about it: The Lancet's Paper of the Year, 2003.
Lancet 2003;362(9401):2101-3.
2003: Noah A Rosenberg; Lei M Li; Ryk Ward; Jonathan K Pritchard
Informativeness of genetic markers for inference of ancestry.
American journal of human genetics 2003;73(6):1402-22.
2003: Noah A Rosenberg; Aaron E Hirsh
On the use of star-shaped genealogies in inference of coalescence times.
Genetics 2003;164(4):1677-82.
2003: Noah A Rosenberg
The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model.
Evolution; international journal of organic evolution 2003;57(7):1465-77.
2003: Noah A Rosenberg; Anthony G Tsolaki; Mark M Tanaka
Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis.
Theoretical population biology 2003;63(4):347-63.
2003: Lev Zhivotovsky; Noah A Rosenberg; marcel salathe
Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers.
American journal of human genetics 2003;72(5):1171-86.
2002: Noah A Rosenberg; Jonathan K Pritchard; James L Weber; Howard M Cann; Kenneth K Kidd; Lev Zhivotovsky; marcel salathe
Genetic structure of human populations.
Science (New York, N.Y.) 2002;298(5602):2381-5.
2002: Noah A Rosenberg; Magnus Nordborg
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms.
Nature reviews. Genetics 2002;3(5):380-90.
2002: Noah A Rosenberg
The probability of topological concordance of gene trees and species trees.
Theoretical population biology 2002;61(2):225-47.
2001: Noah A Rosenberg; T Burke; Kari Elo; marcel salathe; P J Freidlin; M A M Groenen; Jossi Hillel; Asko Mäki-Tanila; Michèle Tixier-Boichard; Alain Vignal; Klaus Wimmers; Steffen Weigend
Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds.
Genetics 2001;159(2):699-713.
2001: M M Tanaka; Noah A Rosenberg
Optimal estimation of transposition rates of insertion sequences for molecular epidemiology.
Statistics in medicine 2001;20(16):2409-20.
2001: Noah A Rosenberg; E Woolf; Jonathan K Pritchard; T Schaap; Dov Gefel; Issac Shpirer; Uri Lavi; B Bonne-Tamir; Jossi Hillel; marcel salathe
Distinctive genetic signatures in the Libyan Jews.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(3):858-63.
2000: Jonathan K Pritchard; Matthew Stephens; Noah A Rosenberg; Peter Donnelly
Association mapping in structured populations.
American journal of human genetics 2000;67(1):170-81.
2000: L Jin; M L Baskett; L Luca Cavalli-Sforza; Lev Zhivotovsky; David Barry Mayer; Noah A Rosenberg
Microsatellite evolution in modern humans: a comparison of two data sets from the same populations.
Annals of human genetics 2000;64(Pt 2):117-34.
1999: Jonathan K Pritchard; Noah A Rosenberg
Use of unlinked genetic markers to detect population stratification in association studies.
American journal of human genetics 1999;65(1):220-8.