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Daniel Rubin

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Mia A Levy; James M Mountz; Matt Oborski; Erik Roelofs; Yongqiang Tan; Anders E Berglund; Fernando Boada; Terry A Braun; Bartley J Brown; Thomas L Casavant; Andre Dekker; Steven A Eschrich; Andriy Fedorov; Fiona M Fennessy; David A Fenstermacher; John B Freymann; Xiaotao Guo; Justin S Kirby; Charles Laymon; Daniel L Rubin
Informatics methods to enable sharing of quantitative imaging research data.
Yueyi I Liu; Daniel L Rubin
The role of informatics in health care reform.
Aaron C Abajian; Mia Levy; Daniel L Rubin
Informatics in radiology: improving clinical work flow through an AIM database: a sample web-based lesion tracking application.

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2012: Mia A Levy; James M Mountz; Matt Oborski; Erik Roelofs; Yongqiang Tan; Anders E Berglund; Fernando Boada; Terry A Braun; Bartley J Brown; Thomas L Casavant; Andre Dekker; Steven A Eschrich; Andriy Fedorov; Fiona M Fennessy; David A Fenstermacher; John B Freymann; Xiaotao Guo; Justin S Kirby; Charles Laymon; Daniel L Rubin
Informatics methods to enable sharing of quantitative imaging research data.
Magnetic resonance imaging 2012;30(9):1249-56.
2012: Yueyi I Liu; Daniel L Rubin
The role of informatics in health care reform.
Academic radiology 2012;19(9):1094-9.
2012: Aaron C Abajian; Mia Levy; Daniel L Rubin
Informatics in radiology: improving clinical work flow through an AIM database: a sample web-based lesion tracking application.
Radiographics : a review publication of the Radiological Society of North America, Inc 2012;32(5):1543-52.
2012: Olivier Gevaert; Chuong D Hoang; Ann N Leung; Sandy Napel; Andrew Quon; Daniel L Rubin; Jiajing Xu; Yue Xu; Sylvia K Plevritis
Non-small cell lung cancer: identifying prognostic imaging biomarkers by leveraging public gene expression microarray data--methods and preliminary results.
Radiology 2012;264(2):387-96.
2011: Jiajing Xu; Hayit Greenspan; Sandy Napel; Daniel L Rubin
Automated temporal tracking and segmentation of lymphoma on serial CT examinations.
Medical physics 2011;38(11):5879-86.
2011: Daniel L Rubin
Informatics in radiology: Measuring and improving quality in radiology: meeting the challenge with informatics.
Radiographics : a review publication of the Radiological Society of North America, Inc 2011;31(6):1511-27.
2011: Mia A Levy; Daniel L Rubin
Current and future trends in imaging informatics for oncology.
Cancer journal (Sudbury, Mass.) 2011;17(4):203-10.
2011: Yueyi I Liu; Aya Kamaya; Terry S Desser; Daniel L Rubin
A bayesian network for differentiating benign from malignant thyroid nodules using sonographic and demographic features.
AJR. American journal of roentgenology 2011;196(5):W598-605.
2011: Ceyhun Burak Akgül; Daniel L Rubin; Sandy Napel; Christopher F Beaulieu; Hayit Greenspan; Burak Acar
Content-based image retrieval in radiology: current status and future directions.
Journal of digital imaging 2011;24(2):208-22.
2011: Daniel L Rubin; Adam Flanders; Woojin Kim; Khan M Siddiqui; Charles E Kahn
Ontology-assisted analysis of Web queries to determine the knowledge radiologists seek.
Journal of digital imaging 2011;24(1):160-4.
2010: Bao H Do; Andrew Wu; Sandip Biswal; Aya Kamaya; Daniel L Rubin
Informatics in radiology: RADTF: a semantic search-enabled, natural language processor-generated radiology teaching file.
Radiographics : a review publication of the Radiological Society of North America, Inc 2010;30(7):2039-48.
2010: Sandy Napel; Christopher F Beaulieu; Cesar Rodriguez; Jingyu Cui; Jiajing Xu; Ankit Gupta; Daniel Korenblum; Hayit Greenspan; Yongjun Ma; Daniel L Rubin
Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results.
Radiology 2010;256(1):243-52.
2009: Natalya F Noy; Nigam Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark Musen
BioPortal: ontologies and integrated data resources at the click of a mouse.
Nucleic acids research 2009;37(Web Server issue):W170-3.
2009: Daniel L Rubin
Informatics methods to enable patient-centered radiology.
Academic radiology 2009;16(5):524-34.
2009: Yueyi I Liu; Aya Kamaya; Terry S Desser; Daniel L Rubin
A Controlled Vocabulary to Represent Sonographic Features of the Thyroid and its application in a Bayesian Network to Predict Thyroid Nodule Malignancy.
Summit on translational bioinformatics 2009;2009():68-72.
2009: Mia A Levy; Martin J O'Connor; Daniel L Rubin
Semantic reasoning with image annotations for tumor assessment.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2009;2009():359-63.
2009: Daniel L Rubin; Ion-Florin Talos; Michael Halle; Mark Musen; Ron Kikinis
Computational neuroanatomy: ontology-based representation of neural components and connectivity.
BMC bioinformatics 2009;10 Suppl 2():S3.
2008: Daniel L Rubin
Creating and curating a terminology for radiology: ontology modeling and analysis.
Journal of digital imaging 2008;21(4):355-62.
2008: Daniel L Rubin; Terry S Desser
A data warehouse for integrating radiologic and pathologic data.
Journal of the American College of Radiology : JACR 2008;5(3):210-7.
2008: Yueyi I Liu; Aya Kamaya; Terry S Desser; Daniel L Rubin
A Bayesian classifier for differentiating benign versus malignant thyroid nodules using sonographic features.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():419-23.
2008: Mia A Levy; Daniel L Rubin
Tool support to enable evaluation of the clinical response to treatment.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():399-403.
2008: Daniel L Rubin; Nigam Shah; Natalya F Noy
Biomedical ontologies: a functional perspective.
Briefings in bioinformatics 2008;9(1):75-90.
2007: Daniel L Rubin; Natalya F Noy; Mark Musen
Protégé: a tool for managing and using terminology in radiology applications.
Journal of digital imaging 2007;20 Suppl 1():34-46.
2007: Mia A Levy; Ankit Garg; Aaron Tam; Yael Garten; Daniel L Rubin
LesionViewer: a tool for tracking cancer lesions over time.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2007;():443-7.
2007: Nigam Shah; Daniel L Rubin; Inigo Espinosa; Kelli Montgomery; Mark Musen
Annotation and query of tissue microarray data using the NCI Thesaurus.
BMC bioinformatics 2007;8():296.
2006: Daniel L Rubin; Olivier Dameron; Yasser Bashir; David Grossman; Parvati Dev; Mark Musen
Using ontologies linked with geometric models to reason about penetrating injuries.
Artificial intelligence in medicine 2006;37(3):167-76.
2006: Terry S Desser; Daniel L Rubin; Pamela Schraedley-Desmond
Coverage of emergency after-hours ultrasound cases: survey of practices at U.S. Teaching hospitals.
Academic radiology 2006;13(2):249-53.
2006: Nigam Shah; Daniel L Rubin; Kaustubh Supekar; Mark Musen
Ontology-based annotation and query of tissue microarray data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():709-13.
2006: Daniel L Rubin; David Grossman; Maxwell Neal; Daniel L Cook; James B Bassingthwaighte; Mark Musen
Ontology-based representation of simulation models of physiology.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():664-8.
2006: Daniel L Rubin; Suzanna E Lewis; Chris Mungall; Sima Misra; Monte Westerfield; Michael Ashburner; Ida Sim; Christopher G Chute; Harold Solbrig; Margaret-Anne Storey; Barry Smith; John Day-Richter; Natalya F Noy; Mark Musen
National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge.
Omics : a journal of integrative biology 2006;10(2):185-98.
2005: Daniel L Rubin; Caroline Thorn; Teri E Klein; Russ B Altman
A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge.
Journal of the American Medical Informatics Association : JAMIA 2005;12(2):121-9.
2005: Daniel L Rubin; Olivier Dameron; Mark Musen
Use of description logic classification to reason about consequences of penetrating injuries.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():649-53.
2005: Olivier Dameron; Daniel L Rubin; Mark Musen
Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():181-5.
2005: Daniel L Rubin; Yasser Bashir; David Grossman; Parvati Dev; Mark Musen
Using an ontology of human anatomy to inform reasoning with geometric models.
Studies in health technology and informatics 2005;111():429-35.
2004: Daniel L Rubin; Yasser Bashir; David Grossman; Parvati Dev; Mark Musen
Linking ontologies with three-dimensional models of anatomy to predict the effects of penetrating injuries.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2004;5():3128-31.
2004: Daniel L Rubin; Michelle Carrillo; Mark Woon; John Conroy; Teri E Klein; Russ B Altman
A resource to acquire and summarize pharmacogenetics knowledge in the literature.
Studies in health technology and informatics 2004;107(Pt 2):793-7.
2003: Russ B Altman; David A Flockhart; Stephen T Sherry; Diane E Oliver; Daniel L Rubin; Teri E Klein
Indexing pharmacogenetic knowledge on the World Wide Web.
Pharmacogenetics 2003;13(1):3-5.
2002: Daniel L Rubin; Farhad Shafa; Diane E Oliver; Micheal Hewett; Russ B Altman
Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S207-15.
2002: Daniel L Rubin; Micheal Hewett; Diane E Oliver; Teri E Klein; Russ B Altman
Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():88-99.
2002: Diane E Oliver; Daniel L Rubin; Josh M Stuart; Micheal Hewett; Teri E Klein; Russ B Altman
Ontology development for a pharmacogenetics knowledge base.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():65-76.
2002: Micheal Hewett; Diane E Oliver; Daniel L Rubin; Katrina L Easton; Josh M Stuart; Russ B Altman; Teri E Klein
PharmGKB: the Pharmacogenetics Knowledge Base.
Nucleic acids research 2002;30(1):163-5.
2001: Teri E Klein; Jeffrey T Chang; M K Cho; K L Easton; R Fergerson; Micheal Hewett; Zhen Lin; Y Liu; S Liu; Diane E Oliver; Daniel L Rubin; F Shafa; Josh M Stuart; Russ B Altman
Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base.
The pharmacogenomics journal 2001;1(3):167-70.
2000: R I Grossman; Daniel L Rubin; G Hunter; V M Haughton; D Lee; G Sze; Matthew J Kuhn; Kenneth R Maravilla; R Tu; W Heindel; Franz J Wippold; N Leeds; JV Zelch; J R Jinkins; Wolfgang Grodd; C Truwit; E Kanal; J M Provenzale; R Ramsey; J Simon; James A Brunberg; Gary R Stevens; Rita M Kristy
Magnetic resonance imaging in patients with central nervous system pathology: a comparison of OptiMARK (Gd-DTPA-BMEA) and Magnevist (Gd-DTPA).
Investigative radiology 2000;35(7):412-9.
1999: D L Ladd; R Hollister; X Peng; D Wei; G Wu; D Delecki; R A Snow; J L Toner; K Kellar; J Eck; V C Desai; Gerald V Raymond; L B Kinter; Terry S Desser; Daniel L Rubin
Polymeric gadolinium chelate magnetic resonance imaging contrast agents: design, synthesis, and properties.
Bioconjugate chemistry 1999;10(3):361-70.
1999: Terry S Desser; Daniel L Rubin; H Muller; GL McIntire; ER Bacon; J L Toner
Blood pool and liver enhancement in CT with liposomal lodixanol: comparison with lohexol.
Academic radiology 1999;6(3):176-83.
1999: Terry S Desser; Daniel L Rubin; H Muller; GL McIntire; ER Bacon; K R Hollister
Interstitial MR and CT lymphography with Gd-dTPA-co-alpha, omega-diaminoPEG(1450) and Gd-dTPA-co-1,6-diaminohexane polymers: preliminary experience.
Academic radiology 1999;6(2):112-8.
1999: Daniel L Rubin; Terry S Desser; Richard C Semelka; J Brown; H V Nghiem; W R Stevens; David A Bluemke; R Nelson; P Fultz; P Reimer; V Ho; Rita M Kristy; Joseph A Pierro
A multicenter, randomized, double-blind study to evaluate the safety, tolerability, and efficacy of OptiMARK (gadoversetamide injection) compared with Magnevist (gadopentetate dimeglumine) in patients with liver pathology: results of a Phase III clinical trial.
Journal of magnetic resonance imaging : JMRI 1999;9(2):240-50.
1995: Daniel L Rubin; H H Muller; S W Young; W A Hunke; W G Gorman; K C Lee
Influence of viscosity on WIN 39996 as a contrast agent for gastrointestinal magnetic resonance imaging.
Investigative radiology 1995;30(4):226-31.
1994: Terry S Desser; Daniel L Rubin; Q Fan; H H Muller; S W Young; K E Kellar; J A Wellons; D L Ladd; J L Toner; R A Snow
Quantitation of saturation effects versus dose in three-dimensional time-of-flight magnetic resonance angiography with blood-pool contrast agents.
Investigative radiology 1994;29 Suppl 2():S65-8.
1994: Daniel L Rubin; Terry S Desser; F Qing; H H Muller; S W Young; GL McIntire; ER Bacon; E Cooper; J Toner
Nanoparticulate contrast media. Blood-pool and liver-spleen imaging.
Investigative radiology 1994;29 Suppl 2():S280-3.
1994: Terry S Desser; Daniel L Rubin; H H Muller; F Qing; S Khodor; G Zanazzi; S W Young; D L Ladd; J A Wellons; K E Kellar
Dynamics of tumor imaging with Gd-DTPA-polyethylene glycol polymers: dependence on molecular weight.
Journal of magnetic resonance imaging : JMRI 1994;4(3):467-72.
1994: Daniel L Rubin; H H Muller; S W Young; W A Hunke; W G Gorman
Optimization of an oral magnetic particle formulation as a gastrointestinal contrast agent for magnetic resonance imaging.
Investigative radiology 1994;29(1):81-6.
1993: Daniel L Rubin; H H Muller; M K Sidhu; S W Young; W A Hunke; W G Gorman
Liquid oral magnetic particles as a gastrointestinal contrast agent for MR imaging: efficacy in vivo.
Journal of magnetic resonance imaging : JMRI 1993;3(1):113-8.
1992: Daniel L Rubin; H H Muller; S W Young
Formulation of radiographically detectable gastrointestinal contrast agents for magnetic resonance imaging: effects of a barium sulfate additive on MR contrast agent effectiveness.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1992;23(1):154-65.
1991: Daniel L Rubin; H H Muller; M Nino-Murcia; M Sidhu; V Christy; S W Young
Intraluminal contrast enhancement and MR visualization of the bowel wall: efficacy of PFOB.
Journal of magnetic resonance imaging : JMRI 1991;1(3):371-80.
1991: Daniel L Rubin; H H Muller; S W Young
Methods for the systematic investigation of gastrointestinal contrast media for MRI: evaluation of intestinal distribution by radiographic monitoring.
Magnetic resonance imaging 1991;9(3):285-93.
1990: Daniel L Rubin; A V Ratner; S W Young
Magnetic susceptibility effects and their application in the development of new ferromagnetic catheters for magnetic resonance imaging.
Investigative radiology 1990;25(12):1325-32.
1990: S W Young; B Bradley; H H Muller; Daniel L Rubin
Detection of hepatic malignancies using Mn-DPDP (manganese dipyridoxal diphosphate) hepatobiliary MRI contrast agent.
Magnetic resonance imaging 1990;8(3):267-76.