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Ingo Ruczinski
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Research Profile (preview)
Genes & Molecular Sequences
Physiology
Chemicals & Drugs
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Procedures
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Network (preview)
9
Baker, David
7
Helzlsouer, Kathy
7
Plaxco, Kevin
6
Strickland, Paul
5
Jorgensen, Timothy
5
Kooperberg, Charles
5
Bonneau, Richard
5
Alberg, Anthony
4
Pevsner, Jonathan
4
Ting, Jason
3
Simons, Kim
3
Beaty, Terri
3
Thuita, Lucy
3
CLIPP, SANDRA
3
Shugart, Yin Yao
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Publications
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Geonetwork of Ingo Ruczinski (preview)
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All Publications
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2010: Li Qing; Fallin M Daniele; Louis Thomas A; Lasseter Virginia K; McGrath John A; Avramopoulos Dimitri; Wolyniec Paula S; Valle David; Liang Kung-Yee; Pulver Ann E; Ruczinski Ingo
Detection of SNP-SNP interactions in trios of parents with schizophrenic children.
Genetic epidemiology 2010;34(5):396-406.
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2010: Louis Thomas A; Ruczinski Ingo
Efficient evaluation of ranking procedures when the number of units is large, with application to SNP identification.
Biometrical journal. Biometrische Zeitschrift 2010;52(1):34-49.
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2010: Mathias Rasika A; Kim Yoonhee; Sung Heejong; Yanek Lisa R; Mantese V J; Hererra-Galeano J Enrique; Ruczinski Ingo; Wilson Alexander F; Faraday Nauder; Becker Lewis C; Becker Diane M
A combined genome-wide linkage and association approach to find susceptibility loci for platelet function phenotypes in European American and African American families with coronary artery disease.
BMC medical genomics 2010;3():22.
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2010: Scharpf Robert B; Ruczinski Ingo
R classes and methods for SNP array data.
Methods in molecular biology (Clifton, N.J.) 2010;593():67-79.
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2009: Jorgensen Timothy J; Ruczinski Ingo; Kessing Bailey; Smith Michael W; Shugart Yin Yao; Alberg Anthony J
Hypothesis-driven candidate gene association studies: practical design and analytical considerations.
American journal of epidemiology 2009;170(8):986-93.
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2009: Wheless Lee; Ruczinski Ingo; Alani Rhoda M; Clipp Sandra; Hoffman-Bolton Judith; Jorgensen Timothy J; Liégeois Nanette J; Strickland Paul T; Alberg Anthony J
The association between skin characteristics and skin cancer prevention behaviors.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2009;18(10):2613-9.
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2009: Miller Christine L; Murakami Peter; Ruczinski Ingo; Ross Randal G; Sinkus Melissa; Sullivan Bernadette; Leonard Sherry
Two complex genotypes relevant to the kynurenine pathway and melanotropin function show association with schizophrenia and bipolar disorder.
Schizophrenia research 2009;113(2-3):259-67.
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2009: Lam Tram Kim; Ruczinski Ingo; Helzlsouer Kathy; Shugart Yin Yao; Li Kelly E; Clipp Sandra; Strickland Paul T; Alberg Anthony J
Copy number variants of GSTM1 and GSTT1 in relation to lung cancer risk in a prospective cohort study.
Annals of epidemiology 2009;19(8):546-52.
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2009: Price Alkes L; Tandon Arti; Patterson Nick; Barnes Kathleen C; Rafaels Nicholas; Ruczinski Ingo; Beaty Terri H; Mathias Rasika; Reich David; Myers Simon
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations.
PLoS genetics 2009;5(6):e1000519.
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2009: Himes Blanca E; Hunninghake Gary M; Baurley James W; Rafaels Nicholas M; Sleiman Patrick; Strachan David P; Wilk Jemma B; Willis-Owen Saffron A G; Klanderman Barbara; Lasky-Su Jessica; Lazarus Ross; Murphy Amy J; Soto-Quiros Manuel E; Avila Lydiana; Beaty Terri; Mathias Rasika A; Ruczinski Ingo; Barnes Kathleen C; Celedón Juan C; Cookson William O C; Gauderman W James; Gilliland Frank D; Hakonarson Hakon; Lange Christoph; Moffatt Miriam F; O'Connor George T; Raby Benjamin A; Silverman Edwin K; Weiss Scott T
Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene.
American journal of human genetics 2009;84(5):581-93.
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2009: Ruczinski Ingo; Plaxco Kevin W
Some recommendations for the practitioner to improve the precision of experimentally determined protein folding rates and phi values.
Proteins 2009;74(2):461-74.
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2009: Gallicchio Lisa; Chang Howard H; Christo Dana K; Thuita Lucy; Huang Han Yao; Strickland Paul; Ruczinski Ingo; Clipp Sandra; Helzlsouer Kathy J
Single nucleotide polymorphisms in obesity-related genes and all-cause and cause-specific mortality: a prospective cohort study.
BMC medical genetics 2009;10():103.
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2008: Chen Jiping; Ruczinski Ingo; Jorgensen Timothy J; Yenokyan Gayane; Yao Yin; Alani Rhoda; Liégeois Nanette J; Hoffman Sandra C; Hoffman-Bolton Judith; Strickland Paul T; Helzlsouer Kathy J; Alberg Anthony J
Nonmelanoma skin cancer and risk for subsequent malignancy.
Journal of the National Cancer Institute 2008;100(17):1215-22.
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2008: Sull Jae Woong; Liang Kung-Yee; Hetmanski Jacqueline B; Fallin Margaret Daniele; Ingersoll Roxann G; Park Jiwan; Wu-Chou Yah-Huei; Chen Philip K; Chong Samuel S; Cheah Felicia; Yeow Vincent; Park Beyoung Yun; Jee Sun Ha; Jabs Ethylin Wang; Redett Richard; Jung Euiju; Ruczinski Ingo; Scott Alan F; Beaty Terri H
Differential parental transmission of markers in RUNX2 among cleft case-parent trios from four populations.
Genetic epidemiology 2008;32(6):505-12.
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2008: Gallicchio Lisa; Chang Howard; Christo Dana K; Thuita Lucy; Huang Han-Yao; Strickland Paul; Ruczinski Ingo; Hoffman Sandra C; Helzlsouer Kathy J
Single nucleotide polymorphisms in inflammation-related genes and mortality in a community-based cohort in Washington County, Maryland.
American journal of epidemiology 2008;167(7):807-13.
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2008: Schulze Kerry J; Christian Parul; Ruczinski Ingo; Ray Amanda L; Nath Avindra; Wu Lee S-F; Semba Richard D
Hepcidin and iron status among pregnant women in Bangladesh.
Asia Pacific journal of clinical nutrition 2008;17(3):451-6.
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2008: Pattaro Cristian; Ruczinski Ingo; Fallin Danièle M; Parmigiani Giovanni
Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies.
BMC genomics 2008;9():405.
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2007: Ting Jason C; Roberson Elisha D O; Miller Nathaniel D; Lysholm-Bernacchi Alana; Stephan Dietrich A; Capone George T; Ruczinski Ingo; Thomas George H; Pevsner Jonathan
Visualization of uniparental inheritance, Mendelian inconsistencies, deletions, and parent of origin effects in single nucleotide polymorphism trio data with SNPtrio.
Human mutation 2007;28(12):1225-35.
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2007: Scharpf Robert B; Ting Jason C; Pevsner Jonathan; Ruczinski Ingo
SNPchip: R classes and methods for SNP array data.
Bioinformatics (Oxford, England) 2007;23(5):627-8.
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2007: Visvanathan Kala; Crum Rosa M; Strickland Paul T; You Xiaojun; Ruczinski Ingo; Berndt Sonja I; Alberg Anthony J; Hoffman Sandra C; Comstock George W; Bell Douglas A; Helzlsouer Kathy J
Alcohol dehydrogenase genetic polymorphisms, low-to-moderate alcohol consumption, and risk of breast cancer.
Alcoholism, clinical and experimental research 2007;31(3):467-76.
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2007: Jorgensen T J; Visvanathan K; Ruczinski I; Thuita L; Hoffman S; Helzlsouer K J
Breast cancer risk is not associated with polymorphic forms of xeroderma pigmentosum genes in a cohort of women from Washington County, Maryland.
Breast cancer research and treatment 2007;101(1):65-71.
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2006: Dai James Y; Ruczinski Ingo; LeBlanc Michael; Kooperberg Charles
Imputation methods to improve inference in SNP association studies.
Genetic epidemiology 2006;30(8):690-702.
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2006: Ruczinski Ingo; Sosnick Tobin R; Plaxco Kevin W
Methods for the accurate estimation of confidence intervals on protein folding phi-values.
Protein science : a publication of the Protein Society 2006;15(10):2257-64.
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2006: Brown Elizabeth E; Fallin Daniele; Ruczinski Ingo; Hutchinson Amy; Staats Brian; Vitale Francesco; Lauria Carmela; Serraino Diego; Rezza Giovanni; Mbisa Georgina; Whitby Denise; Messina Angelo; Goedert James J; Chanock Stephen J
Associations of classic Kaposi sarcoma with common variants in genes that modulate host immunity.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2006;15(5):926-34.
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2006: de los Rios Miguel A; Muralidhara B K; Wildes David; Sosnick Tobin R; Marqusee Susan; Wittung-Stafshede Pernilla; Plaxco Kevin W; Ruczinski Ingo
On the precision of experimentally determined protein folding rates and phi-values.
Protein science : a publication of the Protein Society 2006;15(3):553-63.
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2006: Brewster A M; Jorgensen T J; Ruczinski I; Huang H Y; Hoffman S; Thuita L; Newschaffer C; Lunn R M; Bell D; Helzlsouer K J
Polymorphisms of the DNA repair genes XPD (Lys751Gln) and XRCC1 (Arg399Gln and Arg194Trp): relationship to breast cancer risk and familial predisposition to breast cancer.
Breast cancer research and treatment 2006;95(1):73-80.
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2006: Ting Jason C; Ye Ying; Thomas George H; Ruczinski Ingo; Pevsner Jonathan
Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan.
BMC bioinformatics 2006;7():25.
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2005: McCarney Evan R; Werner James H; Bernstein Summer L; Ruczinski Ingo; Makarov Dmitrii E; Goodwin Peter M; Plaxco Kevin W
Site-specific dimensions across a highly denatured protein; a single molecule study.
Journal of molecular biology 2005;352(3):672-82.
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2005: Maxwell Karen L; Wildes David; Zarrine-Afsar Arash; De Los Rios Miguel A; Brown Andrew G; Friel Claire T; Hedberg Linda; Horng Jia-Cherng; Bona Diane; Miller Erik J; Vallée-Bélisle Alexis; Main Ewan R G; Bemporad Francesco; Qiu Linlin; Teilum Kaare; Vu Ngoc-Diep; Edwards Aled M; Ruczinski Ingo; Poulsen Flemming M; Kragelund Birthe B; Michnick Stephen W; Chiti Fabrizio; Bai Yawen; Hagen Stephen J; Serrano Luis; Oliveberg Mikael; Raleigh Daniel P; Wittung-Stafshede Pernilla; Radford Sheena E; Jackson Sophie E; Sosnick Tobin R; Marqusee Susan; Davidson Alan R; Plaxco Kevin W
Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins.
Protein science : a publication of the Protein Society 2005;14(3):602-16.
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2005: Kooperberg Charles; Ruczinski Ingo
Identifying interacting SNPs using Monte Carlo logic regression.
Genetic epidemiology 2005;28(2):157-70.
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2005: Mao Rong; Wang Xiaowen; Spitznagel Edward L; Frelin Laurence P; Ting Jason C; Ding Huashi; Kim Jung-whan; Ruczinski Ingo; Downey Thomas J; Pevsner Jonathan
Primary and secondary transcriptional effects in the developing human Down syndrome brain and heart.
Genome biology 2005;6(13):R107.
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2004: Kohn Jonathan E; Millett Ian S; Jacob Jaby; Zagrovic Bojan; Dillon Thomas M; Cingel Nikolina; Dothager Robin S; Seifert Soenke; Thiyagarajan P; Sosnick Tobin R; Hasan M Zahid; Pande Vijay S; Ruczinski Ingo; Doniach Sebastian; Plaxco Kevin W
Random-coil behavior and the dimensions of chemically unfolded proteins.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(34):12491-6.
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2002: Bonneau Richard; Ruczinski Ingo; Tsai Jerry; Baker David
Contact order and ab initio protein structure prediction.
Protein science : a publication of the Protein Society 2002;11(8):1937-44.
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2002: Ruczinski Ingo; Kooperberg Charles; Bonneau Richard; Baker David
Distributions of beta sheets in proteins with application to structure prediction.
Proteins 2002;48(1):85-97.
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2002: Larson Stefan M; Ruczinski Ingo; Davidson Alan R; Baker David; Plaxco Kevin W
Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation.
Journal of molecular biology 2002;316(2):225-33.
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2001: Bonneau R; Tsai J; Ruczinski I; Baker D
Functional inferences from blind ab initio protein structure predictions.
Journal of structural biology 2001;134(2-3):186-90.
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2001: Bonneau R; Tsai J; Ruczinski I; Chivian D; Rohl C; Strauss C E; Baker D
Rosetta in CASP4: progress in ab initio protein structure prediction.
Proteins 2001;Suppl 5():119-26.
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2001: Kooperberg C; Ruczinski I; LeBlanc M L; Hsu L
Sequence analysis using logic regression.
Genetic epidemiology 2001;21 Suppl 1():S626-31.
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2000: Plaxco K W; Simons K T; Ruczinski I; Baker D
Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics.
Biochemistry 2000;39(37):11177-83.
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2000: Plaxco K W; Larson S; Ruczinski I; Riddle D S; Thayer E C; Buchwitz B; Davidson A R; Baker D
Evolutionary conservation in protein folding kinetics.
Journal of molecular biology 2000;298(2):303-12.
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1999: Riddle D S; Grantcharova V P; Santiago J V; Alm E; Ruczinski I; Baker D
Experiment and theory highlight role of native state topology in SH3 folding.
Nature structural biology 1999;6(11):1016-24.
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1999: Simons K T; Ruczinski I; Kooperberg C; Fox B A; Bystroff C; Baker D
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins.
Proteins 1999;34(1):82-95.
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1999: Simons K T; Bonneau R; Ruczinski I; Baker D
Ab initio protein structure prediction of CASP III targets using ROSETTA.
Proteins 1999;Suppl 3():171-6.
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