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Robert Russell

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Leonardo G Trabuco; Matthew J Betts; Robert B Russell
Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.
Olga V Kalinina; Hans-Georg Kräusslich; Heike Oberwinkler; Robert B Russell; Bärbel Glass; John A G Briggs
Computational identification of novel amino-acid interactions in HIV Gag via correlated evolution.
Vera van Noort; Ivana Vonkova; Eva Yus; Samuel Bader; Matthew J Betts; Peer Bork; Albert J R Heck; Sebastian Kühner; Runjun Kumar; Tobias Maier; shabaz mohammed; Martina O'Flaherty; Robert B Russell; Vladimir Rybin; Arne Schmeisky; Jan Seebacher; Luis Serrano; Jörg Stülke; Anne-Claude Gavin
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

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All Publications

2012: Leonardo G Trabuco; Matthew J Betts; Robert B Russell
Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.
Methods (San Diego, Calif.) 2012;58(4):343-8.
2012: Olga V Kalinina; Hans-Georg Kräusslich; Heike Oberwinkler; Robert B Russell; Bärbel Glass; John A G Briggs
Computational identification of novel amino-acid interactions in HIV Gag via correlated evolution.
PloS one 2012;7(8):e42468.
2012: Vera van Noort; Ivana Vonkova; Eva Yus; Samuel Bader; Matthew J Betts; Peer Bork; Albert J R Heck; Sebastian Kühner; Runjun Kumar; Tobias Maier; shabaz mohammed; Martina O'Flaherty; Robert B Russell; Vladimir Rybin; Arne Schmeisky; Jan Seebacher; Luis Serrano; Jörg Stülke; Anne-Claude Gavin
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.
Molecular systems biology 2012;8():571.
2011: Olga V Kalinina; Oliver Wichmann; Gordana Apic; Robert B Russell
Combinations of protein-chemical complex structures reveal new targets for established drugs.
PLoS computational biology 2011;7(5):e1002043.
2011: Ashraf Al-Amoudi; Daniel Castaño-Diez; Damien P Devos; Robert B Russell; Graham T Johnson; Achilleas S Frangakis
The three-dimensional molecular structure of the desmosomal plaque.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(16):6480-5.
2011: Gordana Apic; Matthew J Betts; Robert B Russell
Content disputes in Wikipedia reflect geopolitical instability.
PloS one 2011;6(6):e20902.
2010: Oriol Gallego; Matthew J Betts; Jelena Gvozdenovic-Jeremic; Kenji Maeda; Christian Matetzki; Carmen Aguilar-Gurrieri; Pedro Beltran-Alvarez; Stefan Bonn; Carlos Fernández-Tornero; Lars Jensen; Michael Kuhn; Jamie Trott; Vladimir Rybin; Christoph W Müller; Peer Bork; Marko Kaksonen; Robert B Russell; Anne-Claude Gavin
A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae.
Molecular systems biology 2010;6():430.
2010: Christian U Stirnimann; Evangelia Petsalaki; Robert B Russell; Christoph W Müller
WD40 proteins propel cellular networks.
Trends in biochemical sciences 2010;35(10):565-74.
2010: Pier Federico Gherardini; Gabriele Ausiello; Robert B Russell; Manuela Helmer-Citterich
Modular architecture of nucleotide-binding pockets.
Nucleic acids research 2010;38(11):3809-16.
2010: Pavel V Mazin; Mikhail S Gelfand; Andrey A Mironov; Aleksandra B Rakhmaninova; Anatoly R Rubinov; Robert B Russell; Olga V Kalinina
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.
Algorithms for molecular biology : AMB 2010;5():29.
2009: Sebastian Kühner; Vera van Noort; Matthew J Betts; Alejandra Leo-Macias; Claire Batisse; Michaela Rode; Takuji Yamada; Tobias Maier; Samuel Bader; Pedro Beltran-Alvarez; Daniel Castaño-Diez; Wei-Hua Chen; Damien Devos; Marc Güell; Tomas Norambuena; Ines Racke; Vladimir Rybin; Alexander Schmidt; Eva Yus; Ruedi Aebersold; Richard Herrmann; Bettina Böttcher; Achilleas S Frangakis; Robert B Russell; Luis Serrano; Peer Bork; Anne-Claude Gavin
Proteome organization in a genome-reduced bacterium.
Science (New York, N.Y.) 2009;326(5957):1235-40.
2009: Evangelia Petsalaki; Alexander Stark; Eduardo García-Urdiales; Robert B Russell
Accurate prediction of peptide binding sites on protein surfaces.
PLoS computational biology 2009;5(3):e1000335.
2008: Robert B Russell; Patrick Aloy
Targeting and tinkering with interaction networks.
Nature chemical biology 2008;4(11):666-73.
2008: Evangelia Petsalaki; Robert B Russell
Peptide-mediated interactions in biological systems: new discoveries and applications.
Current opinion in biotechnology 2008;19(4):344-50.
2008: Robert B Russell; Toby J Gibson
A careful disorderliness in the proteome: sites for interaction and targets for future therapies.
FEBS letters 2008;582(8):1271-5.
2007: Rune Linding; Lars Jensen; Gerard J. Ostheimer; Marcel A T M van Vugt; Claus Jørgensen; Ioana M Miron; Francesca Diella; Karen Colwill; Lorne Taylor; Kelly Elder; Pavel Metalnikov; Vivian Nguyen; Adrian Pasculescu; Jing Jin; Jin Gyoon Park; Leona D Samson; James R Woodgett; Robert B Russell; Peer Bork; Michael B Yaffe; Tony Pawson
Systematic discovery of in vivo phosphorylation networks.
Cell 2007;129(7):1415-26.
2007: Matthew J Betts; Robert B Russell
The hard cell: from proteomics to a whole cell model.
FEBS letters 2007;581(15):2870-6.
2007: Damien Devos; Robert B Russell
A more complete, complexed and structured interactome.
Current opinion in structural biology 2007;17(3):370-7.
2007: Jörg Moelleken; Jörg Malsam; Matthew J Betts; Ali Movafeghi; Inge Reckmann; Ingrid Meissner; Andrea Hellwig; Robert B Russell; Thomas H Söllner; Britta Brügger; Felix T Wieland
Differential localization of coatomer complex isoforms within the Golgi apparatus.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(11):4425-30.
2007: Victor Neduva; Robert B Russell
Proline-rich regions in transcriptional complexes: heading in many directions.
Science's STKE : signal transduction knowledge environment 2007;2007(369):pe1.
2006: Victor Neduva; Robert B Russell
Peptides mediating interaction networks: new leads at last.
Current opinion in biotechnology 2006;17(5):465-71.
2006: Victor Neduva; Robert B Russell
DILIMOT: discovery of linear motifs in proteins.
Nucleic acids research 2006;34(Web Server issue):W350-5.
2006: Patrick Aloy; Robert B Russell
Structural systems biology: modelling protein interactions.
Nature reviews. Molecular cell biology 2006;7(3):188-97.
2006: Damien Devos; Olga V Kalinina; Robert B Russell
Harry Potter and the structural biologist's (Key)stone.
Genome biology 2006;7(12):333.
2005: Alexander Stark; Julius Brennecke; Natascha Bushati; Robert B Russell; Mohan Balasubramanian
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution.
Cell 2005;123(6):1133-46.
2005: Victor Neduva; Rune Linding; Isabelle Su-Angrand; Alexander Stark; Federico De Masi; Toby J Gibson; Joe Lewis; Luis Serrano; Robert B Russell
Systematic discovery of new recognition peptides mediating protein interaction networks.
PLoS biology 2005;3(12):e405.
2005: Victor Neduva; Robert B Russell
Linear motifs: evolutionary interaction switches.
FEBS letters 2005;579(15):3342-5.
2005: Parantu K Shah; Patrick Aloy; Peer Bork; Robert B Russell
Structural similarity to bridge sequence space: finding new families on the bridges.
Protein science : a publication of the Protein Society 2005;14(5):1305-14.
2005: Patrick Aloy; Robert B Russell
Structure-based systems biology: a zoom lens for the cell.
FEBS letters 2005;579(8):1854-8.
2005: Julius Brennecke; Alexander Stark; Robert B Russell; Mohan Balasubramanian
Principles of microRNA-target recognition.
PLoS biology 2005;3(3):e85.
2005: Patrick Aloy; Matthieu Pichaud; Robert B Russell
Protein complexes: structure prediction challenges for the 21st century.
Current opinion in structural biology 2005;15(1):15-22.
2005: Amelie Stein; Robert B Russell; Patrick Aloy
3did: interacting protein domains of known three-dimensional structure.
Nucleic acids research 2005;33(Database issue):D413-7.
2004: Patrick Aloy; Robert B Russell
Ten thousand interactions for the molecular biologist.
Nature biotechnology 2004;22(10):1317-21.
2004: Alexander Stark; Alexander Shkumatov; Robert B Russell
Finding functional sites in structural genomics proteins.
Structure (London, England : 1993) 2004;12(8):1405-12.
2004: Bettina Böttcher; Sigrid Unseld; Hugo Ceulemans; Robert B Russell; Holger Jeske
Geminate structures of African cassava mosaic virus.
Journal of virology 2004;78(13):6758-65.
2004: Robert B Russell; Frank Alber; Patrick Aloy; Fred P Davis; Dmitry Korkin; Matthieu Pichaud; Maya Topf; Andrej Sali
A structural perspective on protein-protein interactions.
Current opinion in structural biology 2004;14(3):313-24.
2004: Hugo Ceulemans; Robert B Russell
Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization.
Journal of molecular biology 2004;338(4):783-93.
2004: Richard R Copley; Patrick Aloy; Robert B Russell; Maximilian J Telford
Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans.
Evolution & development 2004;6(3):164-9.
2004: Patrick Aloy; Robert B Russell
Taking the mystery out of biological networks.
EMBO reports 2004;5(4):349-50.
2004: Patrick Aloy; Bettina Böttcher; Hugo Ceulemans; Christina Leutwein; Christian Mellwig; Susanne Fischer; Anne-Claude Gavin; Peer Bork; Giulio Superti-Furga; Luis Serrano; Robert B Russell
Structure-based assembly of protein complexes in yeast.
Science (New York, N.Y.) 2004;303(5666):2026-9.
2003: Alexander Stark; Julius Brennecke; Robert B Russell; Mohan Balasubramanian
Identification of Drosophila MicroRNA targets.
PLoS biology 2003;1(3):E60.
2003: Rune Linding; Lars Jensen; Francesca Diella; Peer Bork; Toby J Gibson; Robert B Russell
Protein disorder prediction: implications for structural proteomics.
Structure (London, England : 1993) 2003;11(11):1453-9.
2003: Patrick Aloy; Hugo Ceulemans; Alexander Stark; Robert B Russell
The relationship between sequence and interaction divergence in proteins.
Journal of molecular biology 2003;332(5):989-98.
2003: Rune Linding; Robert B Russell; Victor Neduva; Toby J Gibson
GlobPlot: Exploring protein sequences for globularity and disorder.
Nucleic acids research 2003;31(13):3701-8.
2003: Alexander Stark; Robert B Russell
Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures.
Nucleic acids research 2003;31(13):3341-4.
2003: Julius Brennecke; David R Hipfner; Alexander Stark; Robert B Russell; Mohan Balasubramanian
bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila.
Cell 2003;113(1):25-36.
2003: Patrick Aloy; Alexander Stark; Caroline Hadley; Robert B Russell
Predictions without templates: new folds, secondary structure, and contacts in CASP5.
Proteins 2003;53 Suppl 6():436-56.
2003: Patrick Aloy; Robert B Russell
InterPreTS: protein interaction prediction through tertiary structure.
Bioinformatics (Oxford, England) 2003;19(1):161-2.
2003: Richard R Copley; Robert B Russell
Getting the most from your protein sequence.
Methods in molecular biology (Clifton, N.J.) 2003;211():411-30.
2002: Patrick Aloy; Robert B Russell
The third dimension for protein interactions and complexes.
Trends in biochemical sciences 2002;27(12):633-8.
2002: Raphaël Métivier; Alexander Stark; Gilles Flouriot; Michael R Hübner; Heike Brand; Graziella Penot; Dominique Manu; Stefanie Denger; George Reid; Martin Kos; Robert B Russell; Olivier Kah; pakdel farzad; Frank Gannon
A dynamic structural model for estrogen receptor-alpha activation by ligands, emphasizing the role of interactions between distant A and E domains.
Molecular cell 2002;10(5):1019-32.
2002: Patrick Aloy; Robert B Russell
Potential artefacts in protein-interaction networks.
FEBS letters 2002;530(1-3):253-4.
2002: Robert B Russell
Genomics, proteomics and bioinformatics: all in the same boat.
Genome biology 2002;3(10):REPORTS4034.
2002: Patrick Aloy; Francesca D Ciccarelli; Christina Leutwein; Anne-Claude Gavin; Giulio Superti-Furga; Peer Bork; Bettina Bottcher; Robert B Russell
A complex prediction: three-dimensional model of the yeast exosome.
EMBO reports 2002;3(7):628-35.
2002: Patrick Aloy; baldomero oliva; Enrique Querol; Francesc Aviles; Robert B Russell
Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.
Protein science : a publication of the Protein Society 2002;11(5):1101-16.
2002: Patrick Aloy; Robert B Russell
Interrogating protein interaction networks through structural biology.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):5896-901.
2002: Robert B Russell; José Antonio Márquez; Wolfgang Hengstenberg; Klaus Scheffzek
Evolutionary relationship between the bacterial HPr kinase and the ubiquitous PEP-carboxykinase: expanding the P-loop nucleotidyl transferase superfamily.
FEBS letters 2002;517(1-3):1-6.
2002: José Antonio Márquez; Sonja Hasenbein; Brigitte Koch; Sonia Fieulaine; Sylvie Nessler; Robert B Russell; Wolfgang Hengstenberg; Klaus Scheffzek
Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 A resolution: Mimicking the product/substrate of the phospho transfer reactions.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(6):3458-63.
2002: Francesca D Ciccarelli; Richard R Copley; Tobias Doerks; Robert B Russell; Peer Bork
CASH--a beta-helix domain widespread among carbohydrate-binding proteins.
Trends in biochemical sciences 2002;27(2):59-62.
2000: Maximilian J Telford; Elisabeth Herniou; Robert B Russell; D T J Littlewood
Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(21):11359-64.