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James Russo

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Sathyanarayanan V Puthanveettil; Priyamvada Rajasethupathy; James J Russo; Fahong Yu; Igor Antonov; Yun-Beom Choi; Mathew Citarella; Jingyue Ju; Sergey Kalachikov; Kevin A Karl; Maxime Kinet; Andrea B Kohn; Leonid L Moroz; Irina Morozova; Eric R Kandel
A strategy to capture and characterize the synaptic transcriptome.
Chunmei Qiu; James J Russo; Eric A Schon; Shundi Shi; Sergey M Kalachikov; Shiv Kumar; Jiesheng Lu; Ali Naini; J Guo; Jingyue Ju
Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides.
Chunmei Qiu; James J Russo; Shundi Shi; Lin Yu; J Guo; Wenjing Guo; Shiv Kumar; Jingyue Ju
Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

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All Publications

2013: Sathyanarayanan V Puthanveettil; Priyamvada Rajasethupathy; James J Russo; Fahong Yu; Igor Antonov; Yun-Beom Choi; Mathew Citarella; Jingyue Ju; Sergey Kalachikov; Kevin A Karl; Maxime Kinet; Andrea B Kohn; Leonid L Moroz; Irina Morozova; Eric R Kandel
A strategy to capture and characterize the synaptic transcriptome.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(18):7464-9.
2012: Chunmei Qiu; James J Russo; Eric A Schon; Shundi Shi; Sergey M Kalachikov; Shiv Kumar; Jiesheng Lu; Ali Naini; J Guo; Jingyue Ju
Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides.
Analytical biochemistry 2012;427(2):202-10.
2012: Chunmei Qiu; James J Russo; Shundi Shi; Lin Yu; J Guo; Wenjing Guo; Shiv Kumar; Jingyue Ju
Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Analytical biochemistry 2012;427(2):193-201.
2012: Shiv Kumar; Zengmin Li; Joseph E Reiner; Joseph W F Robertson; James J Russo; Chuanjuan Tao; Arvind Balijepalli; Minchen Chien; Brittney Hellner; John Kasianowicz; Jingyue Ju
PEG-labeled nucleotides and nanopore detection for single molecule DNA sequencing by synthesis.
Scientific reports 2012;2():684.
2009: Priyamvada Rajasethupathy; Ferdinando Fiumara; Robert Sheridan; Doron Betel; Sathyanarayanan V Puthanveettil; James J Russo; Chris Sander; Thomas Tuschl; Eric R Kandel
Characterization of small RNAs in Aplysia reveals a role for miR-124 in constraining synaptic plasticity through CREB.
Neuron 2009;63(6):803-17.
2008: faride haghighi; H Bach-Mizrachi; Yung-yu Huang; Victoria Arango; Shundi Shi; andrew dwork; Gorazd Rosoklija; H T Sheng; Irina Morozova; Jingyue Ju; James J Russo; J John Mann
Genetic architecture of the human tryptophan hydroxylase 2 Gene: existence of neural isoforms and relevance for major depression.
Molecular psychiatry 2008;13(8):813-20.
2008: J Guo; Ning Xu; Zengmin Li; Shenglong Zhang; Jian Wu; Dae Hyun Kim; Mong Sano Marma; Qinglin Meng; Huanyan Cao; Xiaoxu Li; Shundi Shi; Lin Yu; Sergey Kalachikov; James J Russo; Nicholas J Turro; Jingyue Ju
Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(27):9145-50.
2008: Robert M Starke; Grace H Kim; Ricardo J Komotar; Zachary L Hickman; Eric M Black; Maritza B Rosales; Christopher P Kellner; David K Hahn; Marc L Otten; John Edwards; Tao Wang; James J Russo; STEPHAN MAYER; E Sander Connolly
Endothelial nitric oxide synthase gene single-nucleotide polymorphism predicts cerebral vasospasm after aneurysmal subarachnoid hemorrhage.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 2008;28(6):1204-11.
2007: Glenn Randall; Maryline Panis; Jacob D Cooper; Timothy L Tellinghuisen; Karen E Sukhodolets; Sébastien Pfeffer; Markus Landthaler; Pablo Landgraf; Sherry Kan; Brett D Lindenbach; Minchen Chien; David B Weir; James J Russo; Jingyue Ju; Michael J Brownstein; Robert Sheridan; Chris Sander; Mihaela Zavolan; Thomas Tuschl; Charles M Rice
Cellular cofactors affecting hepatitis C virus infection and replication.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12884-9.
2007: Valerio Fulci; Sabina Chiaretti; Marina Goldoni; Gianluca Azzalin; Nicoletta Carucci; Simona Tavolaro; Leandro Castellano; Armando Magrelli; Franca Citarella; Monica Messina; Roberta Maggio; Nadia Peragine; Simona Santangelo; Francesca Romana Mauro; Pablo Landgraf; Thomas Tuschl; David B Weir; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Chris Sander; Mihaela Zavolan; Anna Guarini; Robin Foà; Giuseppe Macino
Quantitative technologies establish a novel microRNA profile of chronic lymphocytic leukemia.
Blood 2007;109(11):4944-51.
2006: Leonid L Moroz; John R Edwards; Sathyanarayanan V Puthanveettil; Andrea B Kohn; Thomas Ha; Andreas Heyland; Bjarne Knudsen; Anuj Sahni; Fahong Yu; Li Liu; Sami H Jezzini; Peter Lovell; William Iannucculli; Minchen Chen; Tuan Nguyen; Huitao Sheng; Regina Shaw; Sergey Kalachikov; Yuri V Panchin; William G Farmerie; James J Russo; Jingyue Ju; Eric R Kandel
Neuronal transcriptome of Aplysia: neuronal compartments and circuitry.
Cell 2006;127(7):1453-67.
2006: Alexei A Aravin; Dimos Gaidatzis; Sébastien Pfeffer; Mariana Lagos-Quintana; Pablo Landgraf; Nicola Iovino; Patricia Morris; Michael J Brownstein; Satomi Kuramochi-Miyagawa; Toru Nakano; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Chris Sander; Mihaela Zavolan; Thomas Tuschl
A novel class of small RNAs bind to MILI protein in mouse testes.
Nature 2006;442(7099):203-7.
2006: Angel A Martí; Xiaoxu Li; Steffen Jockusch; Zengmin Li; Bindu Raveendra; Sergey Kalachikov; James J Russo; Irina Morozova; Sathyanarayanan V Puthanveettil; Jingyue Ju; Nicholas J Turro
Pyrene binary probes for unambiguous detection of mRNA using time-resolved fluorescence spectroscopy.
Nucleic acids research 2006;34(10):3161-8.
2005: Po Yu Chen; Heiko Manninga; Krasimir Slanchev; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Bino John; Debora S Marks; Dimos Gaidatzis; Chris Sander; Mihaela Zavolan; Thomas Tuschl
The developmental miRNA profiles of zebrafish as determined by small RNA cloning.
Genes & development 2005;19(11):1288-93.
2005: Sébastien Pfeffer; Alain Sewer; Mariana Lagos-Quintana; Robert Sheridan; Chris Sander; Friedrich A Grässer; Linda F van Dyk; Kiong Ho; Stewart Shuman; Minchen Chien; James J Russo; Jingyue Ju; Glenn Randall; Brett D Lindenbach; Charles M Rice; Viviana Simon; David D Ho; Mihaela Zavolan; Thomas Tuschl
Identification of microRNAs of the herpesvirus family.
Nature methods 2005;2(4):269-76.
2005: John Jakob; Satoru Nagase; Adi F Gazdar; Minchen Chien; Irina Morozova; James J Russo; Subhadra V Nandula; Vundavalli Murty; Chi-Ming Li; Benjamin Tycko; Ramon Parsons
Two somatic biallelic lesions within and near SMAD4 in a human breast cancer cell line.
Genes, chromosomes & cancer 2005;42(4):372-83.
2004: Sébastien Pfeffer; Mihaela Zavolan; Friedrich A Grässer; Minchen Chien; James J Russo; Jingyue Ju; Bino John; Anton J Enright; Debora Marks; Chris Sander; Thomas Tuschl
Identification of virus-encoded microRNAs.
Science (New York, N.Y.) 2004;304(5671):734-6.
2004: Irina Morozova; Xiaoyan Qu; Shundi Shi; Gifty Asamani; Joseph E Greenberg; Howard A Shuman; James J Russo
Comparative sequence analysis of the icm/dot genes in Legionella.
Plasmid 2004;51(2):127-47.
2003: Sobin Kim; Shundi Shi; Tomás Bonome; Michael E Ulz; John R Edwards; Heidi Fodstad; James J Russo; Jingyue Ju
Multiplex genotyping of the human beta2-adrenergic receptor gene using solid-phase capturable dideoxynucleotides and mass spectrometry.
Analytical biochemistry 2003;316(2):251-8.
2001: Anthony K Tong; Zengmin Li; G S Jones; James J Russo; Jingyue Ju
Combinatorial fluorescence energy transfer tags for multiplex biological assays.
Nature biotechnology 2001;19(8):756-9.
2000: Andrey Rzhetsky; T Koike; Sergey Kalachikov; Shawn Gomez; Michael Krauthammer; S H Kaplan; Pauline Kra; James J Russo; Carol Friedman
A knowledge model for analysis and simulation of regulatory networks.
Bioinformatics (Oxford, England) 2000;16(12):1120-8.
1999: GL Xu; Timothy H Bestor; Déborah Bourc'his; C L Hsieh; Niels Tommerup; M Bugge; M Hulten; X Qu; James J Russo; Evani Viegas-Péquignot
Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene.
Nature 1999;402(6758):187-91.
1999: Gil Segal; James J Russo; Howard A Shuman
Relationships between a new type IV secretion system and the icm/dot virulence system of Legionella pneumophila.
Molecular microbiology 1999;34(4):799-809.
1999: P Zhang; X Ye; L Liao; James J Russo; SG Fischer
Integrated mapping package--a physical mapping software tool kit.
Genomics 1999;55(1):78-87.
1998: Andrey Rzhetsky; Sergey Kalachikov; X Ye; P Zhang; James J Russo
Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.
Gene 1998;208(1):31-5.
1998: X Y Qu; RS Hauptschein; Andrey Rzhetsky; Luigi Scotto; Minchen Chien; X Ye; Ferdinando Frigeri; Pulivarthi H Rao; Laura Pasqualucci; B Gamberi; L L Deaven; P Zhang; Raju S K Chaganti; Riccardo Dalla-Favera; James J Russo
Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27.
DNA sequence : the journal of DNA sequencing and mapping 1998;9(4):189-204.
1998: Eftihia Cayanis; James J Russo; Sergey Kalachikov; X Ye; S H Park; Ivana Sunjevaric; MF Bonaldo; Lee N Lawton; VS Venkatraj; Eric A Schon; MB Soares; Rodney Rothstein; Dorothy Warburton; IS Edelman; P Zhang; Argiris Efstratiadis; SG Fischer
High-resolution YAC-cosmid-STS map of human chromosome 13.
Genomics 1998;47(1):26-43.
1997: R Sarid; T Sato; R A Bohenzky; James J Russo; Yonmee Chang
Kaposi's sarcoma-associated herpesvirus encodes a functional bcl-2 homologue.
Nature medicine 1997;3(3):293-8.
1996: James J Russo; R A Bohenzky; M C Chien; J Chen; M Yan; D Maddalena; J P Parry; D Peruzzi; IS Edelman; Yonmee Chang; Patrick S Moore
Nucleotide sequence of the Kaposi sarcoma-associated herpesvirus (HHV8).
Proceedings of the National Academy of Sciences of the United States of America 1996;93(25):14862-7.
1996: Ethel Cesarman; Roland G Nador; F Bai; R A Bohenzky; James J Russo; Patrick S Moore; Yonmee Chang; Daniel M Knowles
Kaposi's sarcoma-associated herpesvirus contains G protein-coupled receptor and cyclin D homologs which are expressed in Kaposi's sarcoma and malignant lymphoma.
Journal of virology 1996;70(11):8218-23.
1996: SG Fischer; Eftihia Cayanis; M de Fatima Bonaldo; Anne M Bowcock; LL Deaven; IS Edelman; T Gallardo; Sergey Kalachikov; L Lawton; Jonathan L Longmire; Michael Lovett; S Osborne-Lawrence; Rodney Rothstein; James J Russo; MB Soares; Ivana Sunjevaric; VS Venkatraj; Dorothy Warburton; P Zhang; Argiris Efstratiadis
A high-resolution annotated physical map of the human chromosome 13q12-13 region containing the breast cancer susceptibility locus BRCA2.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(2):690-4.
1994: SG Fischer; Eftihia Cayanis; James J Russo; Ivana Sunjevaric; B Boukhgalter; P Zhang; M T Yu; Rodney Rothstein; Dorothy Warburton; IS Edelman
Assembly of ordered contigs of cosmids selected with YACs of human chromosome 13.
Genomics 1994;21(3):525-37.
1993: Konstantin Petrukhin; SG Fischer; M Pirastu; Rudolph E Tanzi; I Chernov; M Devoto; Linda M Brzustowicz; Eftihia Cayanis; E Vitale; James J Russo
Mapping, cloning and genetic characterization of the region containing the Wilson disease gene.
Nature genetics 1993;5(4):338-43.
1993: James J Russo; K J Sweadner
Na(+)-K(+)-ATPase subunit isoform pattern modification by mitogenic insulin concentration in 3T3-L1 preadipocytes.
The American journal of physiology 1993;264(2 Pt 1):C311-6.
1992: Eftihia Cayanis; James J Russo; Y S Wu; IS Edelman
Serum independence of low K+ induction of Na,K-ATPase: possible role of c-fos.
The Journal of membrane biology 1992;125(2):163-70.
1990: James J Russo; M A Manuli; F Ismail-Beigi; K J Sweadner; IS Edelman
Na(+)-K(+)-ATPase in adipocyte differentiation in culture.
The American journal of physiology 1990;259(6 Pt 1):C968-77.