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Rovshan Sadygov

Research Profile

Procedures

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Proteomics

Chemicals & Drugs

Genes & Molecular Sequences

Amino Acid Sequences

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Publications

TOP 3
Takhar Kasumov; Ling Li; Stephen Previs; Rogerio F Ribeiro; Rovshan G Sadygov; Kadambari Chandra Shekar; Kenneth Walsh; Belinda B Willard; Erinne R Dabkowski; William C Stanley
Assessment of cardiac proteome dynamics with heavy water: slower protein synthesis rates in interfibrillar than subsarcolemmal mitochondria.
Ping Wu; Yingxin Zhao; Douglas S DeWitt; Junling Gao; Sigmund J Haidacher; Bruce A Luxon; Margaret O Parsley; Donald S Prough; Rovshan G Sadygov; Heidi Spratt; Jonathan M Starkey; Enyin Wang; Larry Denner
Detection of structural and metabolic changes in traumatically injured hippocampus by quantitative differential proteomics.
Larry A Denner; J Russ Carmical; Sigmund J Haidacher; Caterina M Hernandez; Jordan B Jahrling; Bruce A Luxon; Jennifer Rodriguez-Rivera; Rovshan G Sadygov; Heidi Spratt; Jonathan M Starkey; Thomas G Wood; Yingxin Zhao; Kelly T Dineley
Cognitive enhancement with rosiglitazone links the hippocampal PPARγ and ERK MAPK signaling pathways.

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All Publications

2013: Takhar Kasumov; Ling Li; Stephen Previs; Rogerio F Ribeiro; Rovshan G Sadygov; Kadambari Chandra Shekar; Kenneth Walsh; Belinda B Willard; Erinne R Dabkowski; William C Stanley
Assessment of cardiac proteome dynamics with heavy water: slower protein synthesis rates in interfibrillar than subsarcolemmal mitochondria.
American journal of physiology. Heart and circulatory physiology 2013;304(9):H1201-14.
2013: Ping Wu; Yingxin Zhao; Douglas S DeWitt; Junling Gao; Sigmund J Haidacher; Bruce A Luxon; Margaret O Parsley; Donald S Prough; Rovshan G Sadygov; Heidi Spratt; Jonathan M Starkey; Enyin Wang; Larry Denner
Detection of structural and metabolic changes in traumatically injured hippocampus by quantitative differential proteomics.
Journal of neurotrauma 2013;30(9):775-88.
2012: Larry A Denner; J Russ Carmical; Sigmund J Haidacher; Caterina M Hernandez; Jordan B Jahrling; Bruce A Luxon; Jennifer Rodriguez-Rivera; Rovshan G Sadygov; Heidi Spratt; Jonathan M Starkey; Thomas G Wood; Yingxin Zhao; Kelly T Dineley
Cognitive enhancement with rosiglitazone links the hippocampal PPARγ and ERK MAPK signaling pathways.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2012;32(47):16725-35a.
2012: Ling Li; Arthur J McCullough; Stephen Previs; Nadia Rachdaoui; Rovshan G Sadygov; William C Stanley; Belinda Willard; John P Kirwan; Takhar Kasumov
Plasma proteome dynamics: analysis of lipoproteins and acute phase response proteins with 2H2O metabolic labeling.
Molecular & cellular proteomics : MCP 2012;11(7):M111.014209.
2012: Indranil Mitra; Alexey V Nefedov; Allan R Brasier; Rovshan G Sadygov
Improved mass defect model for theoretical tryptic peptides.
Analytical chemistry 2012;84(6):3026-32.
2012: Rovshan G Sadygov
High mass accuracy phosphopeptide identification using tandem mass spectra.
International journal of proteomics 2012;2012():104681.
2011: Alexey V Nefedov; Allan R Brasier; Indranil Mitra; Rovshan G Sadygov
Examining troughs in the mass distribution of all theoretically possible tryptic peptides.
Journal of proteome research 2011;10(9):4150-7.
2011: Takhar Kasumov; Serguey Ilchenko; Ling Li; Nadia Rachdaoui; Rovshan G Sadygov; Belinda B Willard; Arthur J McCullough; Stephen Previs
Measuring protein synthesis using metabolic ²H labeling, high-resolution mass spectrometry, and an algorithm.
Analytical biochemistry 2011;412(1):47-55.
2011: Alexey V Nefedov; Miroslaw J Gilski; Rovshan G Sadygov
SVM model for quality assessment of medium resolution mass spectra from 18O-water labeling experiments.
Journal of proteome research 2011;10(4):2095-103.
2010: Rovshan G Sadygov; Yingxin Zhao; Sigmund J Haidacher; Jonathan M Starkey; Ronald G Tilton; Larry Denner
Using power spectrum analysis to evaluate (18)O-water labeling data acquired from low resolution mass spectrometers.
Journal of proteome research 2010;9(8):4306-12.
2010: Jonathan M Starkey; Yingxin Zhao; Rovshan G Sadygov; Sigmund J Haidacher; Wanda S Lejeune; Nilay Dey; Bruce A Luxon; Maureen Kane; Joseph L Napoli; Larry Denner; Ronald G Tilton
Altered retinoic acid metabolism in diabetic mouse kidney identified by O isotopic labeling and 2D mass spectrometry.
PloS one 2010;5(6):e11095.
2009: Rovshan G Sadygov; David Good; Danielle L Swaney; Joshua J Coon
A new probabilistic database search algorithm for ETD spectra.
Journal of proteome research 2009;8(6):3198-205.
2008: Rovshan G Sadygov; Zhiqi Hao; Andreas Hühmer
Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra.
Analytical chemistry 2008;80(2):376-86.
2006: Rovshan G Sadygov; Fernando Martin Maroto; Andreas Hühmer
ChromAlign: A two-step algorithmic procedure for time alignment of three-dimensional LC-MS chromatographic surfaces.
Analytical chemistry 2006;78(24):8207-17.
2006: Rovshan G Sadygov; James Wohlschlegel; Sung Kyu Park; Tao Xu; John R Yates
Central limit theorem as an approximation for intensity-based scoring function.
Analytical chemistry 2006;78(1):89-95.
2004: Rovshan G Sadygov; Daniel Cociorva; John R Yates
Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book.
Nature methods 2004;1(3):195-202.
2004: Hongbin Liu; Rovshan G Sadygov; John R Yates
A model for random sampling and estimation of relative protein abundance in shotgun proteomics.
Analytical chemistry 2004;76(14):4193-201.
2004: Rovshan G Sadygov; Hongbin Liu; John R Yates
Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Analytical chemistry 2004;76(6):1664-71.
2004: W Hayes McDonald; David L Tabb; Rovshan G Sadygov; Michael J MacCoss; John D Venable; Johannes Graumann; Jeff R Johnson; Daniel Cociorva; John R Yates
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.
Rapid communications in mass spectrometry : RCM 2004;18(18):2162-8.
2003: Michael J MacCoss; Christine C Wu; Hongbin Liu; Rovshan G Sadygov; John R Yates
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data.
Analytical chemistry 2003;75(24):6912-21.
2003: Rovshan G Sadygov; John R Yates
A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases.
Analytical chemistry 2003;75(15):3792-8.
2002: Michael J MacCoss; W Hayes McDonald; Anita Saraf; Rovshan G Sadygov; Judy M Clark; Joseph J Tasto; Kathleen L Gould; Dirk Wolters; Michael Washburn; Avery Weiss; John I Clark; John R Yates
Shotgun identification of protein modifications from protein complexes and lens tissue.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):7900-5.
2002: Rovshan G Sadygov; Jimmy Eng; Eberhard Durr; Anita Saraf; Hayes McDonald; Michael J MacCoss; John R Yates
Code developments to improve the efficiency of automated MS/MS spectra interpretation.
Journal of proteome research 2002;1(3):211-5.