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James Birchler

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Publications

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Han Fangpu; Gao Zhi; Birchler James A
Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize.
Birchler James A; Gao Zhi; Han Fangpu
A tale of two centromeres--diversity of structure but conservation of function in plants and animals.
Kavi Harsh H; Birchler James A
Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization.

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All Publications

2009: Han Fangpu; Gao Zhi; Birchler James A
Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize.
The Plant cell 2009;21(7):1929-39.
2009: Birchler James A; Gao Zhi; Han Fangpu
A tale of two centromeres--diversity of structure but conservation of function in plants and animals.
Functional & integrative genomics 2009;9(1):7-13.
2009: Kavi Harsh H; Birchler James A
Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization.
BMC research notes 2009;2():217.
2009: Sun X; Birchler J A
Interaction study of the male specific lethal (MSL) complex and trans-acting dosage effects in metafemales of Drosophila melanogaster.
Cytogenetic and genome research 2009;124(3-4):298-311.
2009: Sun X; Birchler J A
Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila.
Cytogenetic and genome research 2009;124(2):158-69.
2008: Veitia Reiner A; Bottani Samuel; Birchler James A
Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects.
Trends in genetics : TIG 2008;24(8):390-7.
2008: Danilova Tatiana V; Birchler James A
Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution, sensitivity, and banding paint development.
Chromosoma 2008;117(4):345-56.
2008: Birchler James A; Kavi Harsh H
Molecular biology. Slicing and dicing for small RNAs.
Science (New York, N.Y.) 2008;320(5879):1023-4.
2008: Vega Juan M; Yu Weichang; Han Fangpu; Kato Akio; Peters Eric M; Zhang Zhanyuan J; Birchler James A
Agrobacterium-mediated transformation of maize (Zea mays) with Cre-lox site specific recombination cassettes in BIBAC vectors.
Plant molecular biology 2008;66(6):587-98.
2008: Riddle Nicole C; Birchler James A
Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008;116(4):563-76.
2008: Lough Ashley N; Roark Leah M; Kato Akio; Ream Thomas S; Lamb Jonathan C; Birchler James A; Newton Kathleen J
Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize.
Genetics 2008;178(1):47-55.
2008: Birchler J A; Yu W; Han F
Plant engineered minichromosomes and artificial chromosome platforms.
Cytogenetic and genome research 2008;120(3-4):228-32.
2008: Kavi Harsh H; Fernandez Harvey; Xie Weiwu; Birchler James A
Genetics and biochemistry of RNAi in Drosophila.
Current topics in microbiology and immunology 2008;320():37-75.
2007: Han Fangpu; Gao Zhi; Yu Weichang; Birchler James A
Minichromosome analysis of chromosome pairing, disjunction, and sister chromatid cohesion in maize.
The Plant cell 2007;19(12):3853-63.
2007: Yu Weichang; Han Fangpu; Birchler James A
Engineered minichromosomes in plants.
Current opinion in biotechnology 2007;18(5):425-31.
2007: Lamb Jonathan C; Meyer Julie M; Birchler James A
A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region.
Chromosoma 2007;116(3):237-47.
2007: Yu Weichang; Han Fangpu; Gao Zhi; Vega Juan M; Birchler James A
Construction and behavior of engineered minichromosomes in maize.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(21):8924-9.
2007: Birchler James A; Yao Hong; Chudalayandi Siva
Biological consequences of dosage dependent gene regulatory systems.
Biochimica et biophysica acta 2007;1769(5-6):422-8.
2007: Lamb Jonathan C; Yu Weichang; Han Fangpu; Birchler James A
Plant chromosomes from end to end: telomeres, heterochromatin and centromeres.
Current opinion in plant biology 2007;10(2):116-22.
2007: Lamb Jonathan C; Danilova Tatiana; Bauer Matthew J; Meyer Julie M; Holland Jennifer J; Jensen Michael D; Birchler James A
Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes.
Genetics 2007;175(3):1047-58.
2007: Han Fangpu; Lamb Jonathan C; Yu Weichang; Gao Zhi; Birchler James A
Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism.
The Plant cell 2007;19(2):524-33.
2007: Birchler James A; Veitia Reiner A
The gene balance hypothesis: from classical genetics to modern genomics.
The Plant cell 2007;19(2):395-402.
2007: Yu Weichang; Lamb Jonathan C; Han Fangpu; Birchler James A
Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize.
Genetics 2007;175(1):31-9.
2007: Lamb Jonathan C; Riddle Nicole C; Cheng Ya-Ming; Theuri James; Birchler James A
Localization and transcription of a retrotransposon-derived element on the maize B chromosome.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2007;15(3):383-98.
2007: Lamb Jonathan C; Meyer Julie M; Corcoran Blake; Kato Akio; Han Fangpu; Birchler James A
Distinct chromosomal distributions of highly repetitive sequences in maize.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2007;15(1):33-49.
2006: Riddle Nicole C; Kato Akio; Birchler James A
Genetic variation for the response to ploidy change in Zea mays L.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;114(1):101-11.
2006: Yu Weichang; Lamb Jonathan C; Han Fangpu; Birchler James A
Telomere-mediated chromosomal truncation in maize.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(46):17331-6.
2006: Pal Bhadra Manika; Bhadra Utpal; Birchler James A
Misregulation of sex-lethal and disruption of male-specific lethal complex localization in Drosophila species hybrids.
Genetics 2006;174(3):1151-9.
2006: Bauer Matthew J; Birchler James A
Organization of endoreduplicated chromosomes in the endosperm of Zea mays L.
Chromosoma 2006;115(5):383-94.
2006: Kavi Harsh H; Fernandez Harvey R; Xie Weiwu; Birchler James A
Polycomb, pairing and PIWI--RNA silencing and nuclear interactions.
Trends in biochemical sciences 2006;31(9):485-7.
2006: Birchler James A; Yao Hong; Chudalayandi Sivanandan
Unraveling the genetic basis of hybrid vigor.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(35):12957-8.
2006: Yu Weichang; Han Fangpu; Kato Akio; Birchler James A
Characterization of a maize isochromosome 8S*8S.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2006;49(6):700-6.
2006: Birchler James A; Fernandez Harvey R; Kavi Harsh H
Commonalities in compensation.
BioEssays : news and reviews in molecular, cellular and developmental biology 2006;28(6):565-8.
2006: Lamb Jonathan C; Birchler James A
Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum.
Genetics 2006;173(2):1007-21.
2006: Kato A; Albert P S; Vega J M; Birchler J A
Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation.
Biotechnic & histochemistry : official publication of the Biological Stain Commission 2006;81(2-3):71-8.
2006: Han Fangpu; Lamb Jonathan C; Birchler James A
High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(9):3238-43.
2006: Kato Akio; Birchler James A
Induction of tetraploid derivatives of maize inbred lines by nitrous oxide gas treatment.
The Journal of heredity 2006;97(1):39-44.
2005: Kavi Harsh H; Xie Weiwu; Fernandez Harvey R; Birchler James A
Global analysis of siRNA-mediated transcriptional gene silencing.
BioEssays : news and reviews in molecular, cellular and developmental biology 2005;27(12):1209-12.
2005: Kavi Harsh H; Fernandez Harvey R; Xie Weiwu; Birchler James A
RNA silencing in Drosophila.
FEBS letters 2005;579(26):5940-9.
2005: Auger D L; Peters E M; Birchler J A
A genetic test of bioactive gibberellins as regulators of heterosis in maize.
The Journal of heredity 2005;96(5):614-7.
2005: Della Vedova Chris B; Lorbiecke René; Kirsch Helene; Schulte Michael B; Scheets Kay; Borchert Lutz M; Scheffler Brian E; Wienand Udo; Cone Karen C; Birchler James A
The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism.
Genetics 2005;170(4):1989-2002.
2005: Ream Thomas S; Strobel Jonathan; Roller Brandon; Auger Donald L; Kato Akio; Halbrook Cynthia; Peters Eric M; Theuri James; Bauer Matthew J; Addae Prince; Dioh Waly; Staub Jeffrey M; Gilbertson Larry A; Birchler James A
A test for ectopic exchange catalyzed by Cre recombinase in maize.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(2):378-85.
2005: Jin Weiwei; Lamb Jonathan C; Vega Juan M; Dawe R Kelly; Birchler James A; Jiang Jiming
Molecular and functional dissection of the maize B chromosome centromere.
The Plant cell 2005;17(5):1412-23.
2005: Birchler James A; Riddle Nicole C; Auger Donald L; Veitia Reiner A
Dosage balance in gene regulation: biological implications.
Trends in genetics : TIG 2005;21(4):219-26.
2005: Kato Akio; Vega Juan M; Han Fangpu; Lamb Jonathan C; Birchler James A
Advances in plant chromosome identification and cytogenetic techniques.
Current opinion in plant biology 2005;8(2):148-54.
2005: Bhadra Manika Pal; Bhadra Utpal; Kundu Joydeep; Birchler James A
Gene expression analysis of the function of the male-specific lethal complex in Drosophila.
Genetics 2005;169(4):2061-74.
2005: Fernandez H R; Kavi H H; Xie W; Birchler J A
Heterochromatin: on the ADAR radar?
Current biology : CB 2005;15(4):R132-4.
2005: Lamb Jonathan C; Kato Akio; Birchler James A
Sequences associated with A chromosome centromeres are present throughout the maize B chromosome.
Chromosoma 2005;113(7):337-49.
2005: Auger Donald L; Gray Anjali Dogra; Ream Thomas S; Kato Akio; Coe Edward H; Birchler James A
Nonadditive gene expression in diploid and triploid hybrids of maize.
Genetics 2005;169(1):389-97.
2005: Theuri J; Phelps-Durr T; Mathews S; Birchler J
A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize.
Cytogenetic and genome research 2005;110(1-4):203-8.
2005: Kato A; Zheng Y-Z; Auger D L; Phelps-Durr T; Bauer M J; Lamb J C; Birchler J A
Minichromosomes derived from the B chromosome of maize.
Cytogenetic and genome research 2005;109(1-3):156-65.
2004: Birchler James A; Kavi Harsh H; Fernandez Harvey R
Heterochromatin: RNA points the way.
Current biology : CB 2004;14(18):R759-61.
2004: Kato Akio; Lamb Jonathan C; Birchler James A
Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(37):13554-9.
2004: Auger D L; Ream T S; Birchler J A
A test for a metastable epigenetic component of heterosis using haploid induction in maize.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;108(6):1017-23.
2004: Pal-Bhadra Manika; Leibovitch Boris A; Gandhi Sumit G; Rao Madhusudana; Bhadra Utpal; Birchler James A; Elgin Sarah C R
Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery.
Science (New York, N.Y.) 2004;303(5658):669-72.
2004: Pal-Bhadra M; Bhadra U; Birchler J A
Interrelationship of RNA interference and transcriptional gene silencing in Drosophila.
Cold Spring Harbor symposia on quantitative biology 2004;69():433-8.
2004: Lamb Jonathan C; Theuri James; Birchler James A
What's in a centromere?
Genome biology 2004;5(9):239.
2004: Phelps-Durr T L; Birchler J A
An asymptotic determination of minimum centromere size for the maize B chromosome.
Cytogenetic and genome research 2004;106(2-4):309-13.
2004: Birchler James A; Newton Kathleen J
Discovering the seeds of diversity in plant genomes.
Genome biology 2004;5(5):323.
2003: Jiang Jiming; Birchler James A; Parrott Wayne A; Dawe R Kelly
A molecular view of plant centromeres.
Trends in plant science 2003;8(12):570-5.
2003: Riddle Nicole C; Birchler James A
Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids.
Trends in genetics : TIG 2003;19(11):597-600.
2003: Birchler James A; Auger Donald L; Riddle Nicole C
In search of the molecular basis of heterosis.
The Plant cell 2003;15(10):2236-9.
2003: Birchler James A; Dawe R Kelly; Doebley John F
Marcus rhoades, preferential segregation and meiotic drive.
Genetics 2003;164(3):835-41.
2003: Birchler James A; Pal-Bhadra Manika; Bhadra Utpal
Dosage dependent gene regulation and the compensation of the X chromosome in Drosophila males.
Genetica 2003;117(2-3):179-90.
2003: Osborn Thomas C; Pires J Chris; Birchler James A; Auger Donald L; Chen Z Jeffery; Lee Hyeon-Se; Comai Luca; Madlung Andreas; Doerge R W; Colot Vincent; Martienssen Robert A
Understanding mechanisms of novel gene expression in polyploids.
Trends in genetics : TIG 2003;19(3):141-7.
2003: Lamb Jonathan C; Birchler James A
The role of DNA sequence in centromere formation.
Genome biology 2003;4(5):214.
2002: Zhong Cathy Xiaoyan; Marshall Joshua B; Topp Christopher; Mroczek Rebecca; Kato Akio; Nagaki Kiyotaka; Birchler James A; Jiang Jiming; Dawe R Kelly
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.
The Plant cell 2002;14(11):2825-36.
2002: Kaszás Etienne; Kato Akio; Birchler James A
Cytological and molecular analysis of centromere misdivision in maize.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2002;45(4):759-68.
2002: Pal-Bhadra Manika; Bhadra Utpal; Birchler James A
RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila.
Molecular cell 2002;9(2):315-27.
2002: Auger D L; Birchler J A
Maize tertiary trisomic stocks derived from B-A translocations.
The Journal of heredity 2002;93(1):42-7.
2001: Page B T; Wanous M K; Birchler J A
Characterization of a maize chromosome 4 centromeric sequence: evidence for an evolutionary relationship with the B chromosome centromere.
Genetics 2001;159(1):291-302.
2001: Birchler J A; Bhadra U; Bhadra M P; Auger D L
Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits.
Developmental biology 2001;234(2):275-88.
2001: Frolov M V; Benevolenskaya E V; Birchler J A
Molecular analysis of a novel Drosophila diacylglycerol kinase, DGKepsilon.
Biochimica et biophysica acta 2001;1538(2-3):339-52.
2001: Auger D L; Newton K J; Birchler J A
Nuclear gene dosage effects upon the expression of maize mitochondrial genes.
Genetics 2001;157(4):1711-21.
2000: Frolov M V; Benevolenskaya E V; Birchler J A
The oxen gene of Drosophila encodes a homolog of subunit 9 of yeast ubiquinol-cytochrome c oxidoreductase complex: evidence for modulation of gene expression in response to mitochondrial activity.
Genetics 2000;156(4):1727-36.
2000: Bhadra U; Pal-Bhadra M; Birchler J A
Histone acetylation and gene expression analysis of sex lethal mutants in Drosophila.
Genetics 2000;155(2):753-63.
2000: Benevolenskaya E V; Frolov M V; Birchler J A
Krüppel homolog (Kr h) is a dosage-dependent modifier of gene expression in Drosophila.
Genetical research 2000;75(2):137-42.
2000: Birchler J A; Bhadra M P; Bhadra U
Making noise about silence: repression of repeated genes in animals.
Current opinion in genetics & development 2000;10(2):211-6.
1999: Pal-Bhadra M; Bhadra U; Birchler J A
Cosuppression of nonhomologous transgenes in Drosophila involves mutually related endogenous sequences.
Cell 1999;99(1):35-46.
1999: Bhadra U; Pal-Bhadra M; Birchler J A
Role of the male specific lethal (msl) genes in modifying the effects of sex chromosomal dosage in Drosophila.
Genetics 1999;152(1):249-68.
1998: Kaszás E; Birchler J A
Meiotic transmission rates correlate with physical features of rearranged centromeres in maize.
Genetics 1998;150(4):1683-92.
1998: Frolov M V; Birchler J A
Mutation in P0, a dual function ribosomal protein/apurinic/apyrimidinic endonuclease, modifies gene expression and position effect variegation in Drosophila.
Genetics 1998;150(4):1487-95.
1998: Benevolenskaya E V; Frolov M V; Birchler J A
The sugarless mutation affects the expression of the white eye color gene in Drosophila melanogaster.
Molecular & general genetics : MGG 1998;260(2-3):131-43.
1998: Bhadra U; Bhadra M P; Birchler J A
Interactions among dosage-dependent trans-acting modifiers of gene expression and position-effect variegation in Drosophila.
Genetics 1998;150(1):251-63.
1998: Pal Bhadra M; Bhadra U; Birchler J A
Role of multiple trans-acting regulators in modifying the effect of the retrotransposon copia on host gene expression in Drosophila.
Molecular & general genetics : MGG 1998;259(2):198-206.
1998: Frolov M V; Benevolenskaya E V; Birchler J A
Regena (Rga), a Drosophila homolog of the global negative transcriptional regulator CDC36 (NOT2) from yeast, modifies gene expression and suppresses position effect variegation.
Genetics 1998;148(1):317-29.
1997: Birchler J A
Do these sequences make CENs yet?
Genome research 1997;7(11):1035-7.
1997: Pal-Bhadra M; Bhadra U; Birchler J A
Cosuppression in Drosophila: gene silencing of Alcohol dehydrogenase by white-Adh transgenes is Polycomb dependent.
Cell 1997;90(3):479-90.
1997: Bhadra U; Pal-Bhadra M; Birchler J A
A sex-influenced modifier in Drosophila that affects a broad spectrum of target loci including the histone repeats.
Genetics 1997;146(3):903-17.
1997: Bhadra U; Pal-Bhadra M; Birchler J A
A trans-acting modifier causing extensive overexpression of genes in Drosophila melanogaster.
Molecular & general genetics : MGG 1997;254(6):621-34.
1996: Kaszás E; Birchler J A
Misdivision analysis of centromere structure in maize.
The EMBO journal 1996;15(19):5246-55.
1996: Guo M; Davis D; Birchler J A
Dosage effects on gene expression in a maize ploidy series.
Genetics 1996;142(4):1349-55.
1996: Bhadra U; Birchler J A
Characterization of a sex-influenced modifier of gene expression and suppressor of position-effect variegation in Drosophila.
Molecular & general genetics : MGG 1996;250(5):601-13.
1994: Csink A K; Linsk R; Birchler J A
The Lighten up (Lip) gene of Drosophila melanogaster, a modifier of retroelement expression, position effect variegation and white locus insertion alleles.
Genetics 1994;138(1):153-63.
1994: Birchler J A; Bhadra U; Rabinow L; Linsk R; Nguyen-Huynh A T
Weakener of white (Wow), a gene that modifies the expression of the white eye color locus and that suppresses position effect variegation in Drosophila melanogaster.
Genetics 1994;137(4):1057-70.
1994: Hiebert J C; Birchler J A
Effects of the maleless mutation on X and autosomal gene expression in Drosophila melanogaster.
Genetics 1994;136(3):913-26.
1994: Csink A K; Linsk R; Birchler J A
Mosaic suppressor, a gene in Drosophila that modifies retrotransposon expression and interacts with zeste.
Genetics 1994;136(2):573-83.
1993: Alfenito M R; Birchler J A
Molecular characterization of a maize B chromosome centric sequence.
Genetics 1993;135(2):589-97.
1993: Sabl J F; Birchler J A
Dosage dependent modifiers of white alleles in Drosophila melanogaster.
Genetical research 1993;62(1):15-22.
1993: Rabinow L; Chiang S L; Birchler J A
Mutations at the Darkener of apricot locus modulate transcript levels of copia and copia-induced mutations in Drosophila melanogaster.
Genetics 1993;134(4):1175-85.
1993: Birchler J A
Dosage analysis of maize endosperm development.
Annual review of genetics 1993;27():181-204.
1992: Hiebert J C; Birchler J A
Dosage compensation of the copia retrotransposon in Drosophila melanogaster.
Genetics 1992;130(3):539-45.
1992: Birchler J A
Expression of cis-regulatory mutations of the white locus in metafemales of Drosophila melanogaster.
Genetical research 1992;59(1):11-8.
1991: Rabinow L; Nguyen-Huynh A T; Birchler J A
A trans-acting regulatory gene that inversely affects the expression of the white, brown and scarlet loci in Drosophila.
Genetics 1991;129(2):463-80.
1991: Birchler J A; Levin D M
Directed synthesis of a segmental chromosomal transposition: an approach to the study of chromosomes lethal to the gametophyte generation of maize.
Genetics 1991;127(3):609-18.
1990: Birchler J A; Chalfoun D J; Levin D M
Recombination in the B chromosome of maize to produce A-B-A chromosomes.
Genetics 1990;126(3):723-33.
1990: Birchler J
Amaizing results.
Trends in genetics : TIG 1990;6(8):231-3.
1990: Rabinow L; Birchler J
Interactions among modifiers of retrotransposon-induced alleles of the white locus of Drosophila melanogaster.
Genetical research 1990;55(3):141-51.
1990: Rabinow L; Birchler J A
Interactions of vestigial and scabrous with the Notch locus of Drosophila melanogaster.
Genetics 1990;125(1):41-50.
1990: Birchler J A; Hiebert J C; Paigen K
Analysis of autosomal dosage compensation involving the alcohol dehydrogenase locus in Drosophila melanogaster.
Genetics 1990;124(3):679-86.
1989: Birchler J A; Hiebert J C; Krietzman M
Gene expression in adult metafemales of Drosophila melanogaster.
Genetics 1989;122(4):869-79.
1989: Birchler J A; Hiebert J C
Interaction of the Enhancer of white-apricot with transposable element alleles at the white locus in Drosophila melanogaster.
Genetics 1989;122(1):129-38.
1989: Rabinow L; Birchler J A
A dosage-sensitive modifier of retrotransposon-induced alleles of the Drosophila white locus.
The EMBO journal 1989;8(3):879-89.
1989: Birchler J A; Hiebert J C; Rabinow L
Interaction of the mottler of white with transposable element alleles at the white locus in Drosophila melanogaster.
Genes & development 1989;3(1):73-84.

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