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Berry Birdsall

Research Profile

Living Beings

Lactobacillus casei

Chemicals & Drugs

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Nuclear Magnetic Resonance, Biomolecular

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Publications

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Vladimir Polshakov; Berry Birdsall; Boris D Eliseev; Ludmila Yu Frolova
Structure and dynamics in solution of the stop codon decoding N-terminal domain of the human polypeptide chain release factor eRF1.
James Feeney; Berry Birdsall; Nadezhda V Kovalevskaya; Yegor D Smurnyy; Emna M Navarro Peran; Vladimir Polshakov
NMR structures of apo L. casei dihydrofolate reductase and its complexes with trimethoprim and NADPH: contributions to positive cooperative binding from ligand-induced refolding, conformational changes, and interligand hydrophobic interactions.
Alexey B Mantsyzov; Elena V Ivanova; Berry Birdsall; Elena Z Alkalaeva; Polina N Kryuchkova; Geoff Kelly; Ludmila Y Frolova; Vladimir Polshakov
NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor.

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All Publications

2012: Vladimir Polshakov; Berry Birdsall; Boris D Eliseev; Ludmila Yu Frolova
Structure and dynamics in solution of the stop codon decoding N-terminal domain of the human polypeptide chain release factor eRF1.
Protein science : a publication of the Protein Society 2012;21(6):896-903.
2011: James Feeney; Berry Birdsall; Nadezhda V Kovalevskaya; Yegor D Smurnyy; Emna M Navarro Peran; Vladimir Polshakov
NMR structures of apo L. casei dihydrofolate reductase and its complexes with trimethoprim and NADPH: contributions to positive cooperative binding from ligand-induced refolding, conformational changes, and interligand hydrophobic interactions.
Biochemistry 2011;50(18):3609-20.
2010: Alexey B Mantsyzov; Elena V Ivanova; Berry Birdsall; Elena Z Alkalaeva; Polina N Kryuchkova; Geoff Kelly; Ludmila Y Frolova; Vladimir Polshakov
NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor.
The FEBS journal 2010;277(12):2611-27.
2010: Jonathan A Hern; Asma H Baig; Gregory I Mashanov; Berry Birdsall; John E T Corrie; Sebastian Lazareno; Justin E Molloy; Nigel J M Birdsall
Formation and dissociation of M1 muscarinic receptor dimers seen by total internal reflection fluorescence imaging of single molecules.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(6):2693-8.
2007: Elena V Ivanova; Peter M Kolosov; Berry Birdsall; Geoff Kelly; Annalisa Pastore; Lev L Kisselev; Vladimir Polshakov
Eukaryotic class 1 translation termination factor eRF1--the NMR structure and dynamics of the middle domain involved in triggering ribosome-dependent peptidyl-tRNA hydrolysis.
The FEBS journal 2007;274(16):4223-37.
2006: Valeria Musi; Berry Birdsall; Gregorio Fernandez-Ballester; Remo Guerrini; Severo Salvatori; Luis Serrano; Annalisa Pastore
New approaches to high-throughput structure characterization of SH3 complexes: the example of Myosin-3 and Myosin-5 SH3 domains from S. cerevisiae.
Protein science : a publication of the Protein Society 2006;15(4):795-807.
2006: Vladimir Polshakov; Berry Birdsall; James Feeney
Effects of co-operative ligand binding on protein amide NH hydrogen exchange.
Journal of molecular biology 2006;356(4):886-903.
2006: Elena V Ivanova; Peter M Kolosov; Berry Birdsall; Lev L Kisselev; Vladimir Polshakov
NMR assignments of the middle domain of human polypeptide release factor eRF1.
Journal of biomolecular NMR 2006;36 Suppl 1():8.
2005: Nadezhda V Kovalevskaya; Yegor D Smurnyy; Vladimir Polshakov; Berry Birdsall; Alan F Bradbury; Thomas A Frenkiel; James Feeney
Solution structure of human dihydrofolate reductase in its complex with trimethoprim and NADPH.
Journal of biomolecular NMR 2005;33(1):69-72.
2003: Suzanne L Fleck; Berry Birdsall; jeffrey babon; Anton R Dluzewski; Stephen Martin; William D Morgan; Evelina Angov; Catherine A Kettleborough; James Feeney; Michael J Blackman; Anthony A Holder
Suramin and suramin analogues inhibit merozoite surface protein-1 secondary processing and erythrocyte invasion by the malaria parasite Plasmodium falciparum.
The Journal of biological chemistry 2003;278(48):47670-7.
2002: Heide Kogelberg; Thomas A Frenkiel; Berry Birdsall; Wengang Chai; Frederick W Muskett
Binding of sucrose octasulphate to the C-type lectin-like domain of the recombinant natural killer cell receptor NKR-P1A observed by NMR spectroscopy.
Chembiochem : a European journal of chemical biology 2002;3(11):1072-7.
2002: Vladimir Polshakov; Eugeni G Smirnov; Berry Birdsall; Geoff Kelly; James Feeney
NMR-based solution structure of the complex of Lactobacillus casei dihydrofolate reductase with trimethoprim and NADPH.
Journal of biomolecular NMR 2002;24(1):67-70.
2001: J Feeny; Berry Birdsall; A F Bradbury; Rodolfo R Biekofsky; Peter M Bayley
Calmodulin tagging provides a general method of using lanthanide induced magnetic field orientation to observe residual dipolar couplings in proteins in solution.
Journal of biomolecular NMR 2001;21(1):41-8.
2001: Berry Birdsall; James Feeney; Ian D J Burdett; Sulemana Bawumia; Erminia Barboni; R Colin Hughes
NMR solution studies of hamster galectin-3 and electron microscopic visualization of surface-adsorbed complexes: evidence for interactions between the N- and C-terminal domains.
Biochemistry 2001;40(15):4859-66.
2001: Chairat Uthaipibull; B Aufiero; Shabih-e-Hassnain Syed; B Hansen; Jose A. Guevara-Patino; Evelina Angov; Irene T Ling; Konstantin Fegeding; William D Morgan; Christian F Ockenhouse; Berry Birdsall; James Feeney; Jeffrey A Lyon; Anthony A Holder
Inhibitory and blocking monoclonal antibody epitopes on merozoite surface protein 1 of the malaria parasite Plasmodium falciparum.
Journal of molecular biology 2001;307(5):1381-94.
2000: Berry Birdsall; Vladimir Polshakov; James Feeney
NMR studies of ligand carboxylate group interactions with arginine residues in complexes of Lactobacillus casei dihydrofolate reductase with substrates and substrate analogues.
Biochemistry 2000;39(32):9819-25.
1999: Vladimir Polshakov; Berry Birdsall; James Feeney
Characterization of rates of ring-flipping in trimethoprim in its ternary complexes with Lactobacillus casei dihydrofolate reductase and coenzyme analogues.
Biochemistry 1999;38(48):15962-9.
1999: P A Benjamin; Irene T Ling; G Clottey; L M Valero; Solabomi A Ogun; Suzanne L Fleck; D Walliker; William D Morgan; Berry Birdsall; James Feeney; Anthony A Holder
Antigenic and sequence diversity at the C-terminus of the merozoite surface protein-1 from rodent malaria isolates, and the binding of protective monoclonal antibodies.
Molecular and biochemical parasitology 1999;104(2):147-56.
1999: Vladimir Polshakov; William D Morgan; Berry Birdsall; James Feeney
Validation of a new restraint docking method for solution structure determinations of protein-ligand complexes.
Journal of biomolecular NMR 1999;14(2):115-22.
1999: William D Morgan; Berry Birdsall; Thomas A Frenkiel; M G Gradwell; P A Burghaus; Shabih-e-Hassnain Syed; Chairat Uthaipibull; Anthony A Holder; James Feeney
Solution structure of an EGF module pair from the Plasmodium falciparum merozoite surface protein 1.
Journal of molecular biology 1999;289(1):113-22.
1999: Vladimir Polshakov; Berry Birdsall; Thomas A Frenkiel; AR Gargaro; James Feeney
Structure and dynamics in solution of the complex of Lactobacillus casei dihydrofolate reductase with the new lipophilic antifolate drug trimetrexate.
Protein science : a publication of the Protein Society 1999;8(3):467-81.
1999: William D Morgan; Berry Birdsall; Pedro M Nieto; AR Gargaro; James Feeney
1H/15N HSQC NMR studies of ligand carboxylate group interactions with arginine residues in complexes of brodimoprim analogues and Lactobacillus casei dihydrofolate reductase.
Biochemistry 1999;38(7):2127-34.
1998: AR Gargaro; A Soteriou; Thomas A Frenkiel; C J Bauer; Berry Birdsall; Vladimir Polshakov; Igor L Barsukov; Gordon Roberts; James Feeney
The solution structure of the complex of Lactobacillus casei dihydrofolate reductase with methotrexate.
Journal of molecular biology 1998;277(1):119-34.
1997: Pedro M Nieto; Berry Birdsall; William D Morgan; Thomas A Frenkiel; AR Gargaro; James Feeney
Correlated bond rotations in interactions of arginine residues with ligand carboxylate groups in protein ligand complexes.
FEBS letters 1997;405(1):16-20.
1997: Berry Birdsall; Marco G Casarotto; H T Cheung; Jaswir Basran; Gordon Roberts; James Feeney
The influence of aspartate 26 on the tautomeric forms of folate bound to Lactobacillus casei dihydrofolate reductase.
FEBS letters 1997;402(2-3):157-61.
1996: AR Gargaro; Thomas A Frenkiel; Pedro M Nieto; Berry Birdsall; Vladimir Polshakov; William D Morgan; James Feeney
NMR detection of arginine-ligand interactions in complexes of Lactobacillus casei dihydrofolate reductase.
European journal of biochemistry / FEBS 1996;238(2):435-9.
1996: Ioannis P Gerothanassis; P J Barrie; Berry Birdsall; James Feeney
31P solid-state NMR measurements used to detect interactions between NADPH and water and to determine the ionisation state of NADPH in a protein-ligand complex subjected to low-level hydration.
European journal of biochemistry / FEBS 1996;235(1-2):262-6.
1995: William D Morgan; Berry Birdsall; Vladimir Polshakov; D Sali; I Kompis; James Feeney
Solution structure of a brodimoprim analogue in its complex with Lactobacillus casei dihydrofolate reductase.
Biochemistry 1995;34(37):11690-702.
1995: Vladimir Polshakov; Thomas A Frenkiel; Berry Birdsall; A Soteriou; James Feeney
Determination of stereospecific assignments, torsion-angle constraints, and rotamer populations in proteins using the program AngleSearch.
Journal of magnetic resonance. Series B 1995;108(1):31-43.
1994: Ioannis P Gerothanassis; P J Barrie; Berry Birdsall; James Feeney
31P-NMR studies of NADPH, NADP+ and the complex of NADPH and methotrexate with Lactobacillus casei dihydrofolate reductase in the solid state.
European journal of biochemistry / FEBS 1994;226(1):211-8.
1994: G Martorell; M J Gradwell; Berry Birdsall; C J Bauer; Thomas A Frenkiel; H T Cheung; Vladimir Polshakov; L Kuyper; James Feeney
Solution structure of bound trimethoprim in its complex with Lactobacillus casei dihydrofolate reductase.
Biochemistry 1994;33(41):12416-26.
1994: J A Thomas; J R Arnold; Jaswir Basran; J Andrews; Gordon Roberts; Berry Birdsall; James Feeney
Effects of substitution of Thr63 by alanine on the structure and function of Lactobacillus casei dihydrofolate reductase.
Protein engineering 1994;7(6):783-92.
1993: A Soteriou; Mark D Carr; Thomas A Frenkiel; J E McCormick; C J Bauer; D Sali; Berry Birdsall; James Feeney
3D 13C/1H NMR-based assignments for side-chain resonances of Lactobacillus casei dihydrofolate reductase. Evidence for similarities between the solution and crystal structures of the enzyme.
Journal of biomolecular NMR 1993;3(5):535-46.
1993: H T Cheung; Berry Birdsall; Thomas A Frenkiel; D D Chau; James Feeney
13C NMR determination of the tautomeric and ionization states of folate in its complexes with Lactobacillus casei dihydrofolate reductase.
Biochemistry 1993;32(27):6846-54.
1993: G Ostler; A Soteriou; C M Moody; J A Khan; Berry Birdsall; Mark D Carr; D W Young; James Feeney
Stereospecific assignments of the leucine methyl resonances in the 1H NMR spectrum of Lactobacillus casei dihydrofolate reductase.
FEBS letters 1993;318(2):177-80.
1992: H T Cheung; Berry Birdsall; James Feeney
13C NMR studies of complexes of Escherichia coli dihydrofolate reductase formed with methotrexate and with folic acid.
FEBS letters 1992;312(2-3):147-51.
1992: Ioannis P Gerothanassis; Berry Birdsall; C J Bauer; Thomas A Frenkiel; James Feeney
Nuclear magnetic resonance detection of bound water molecules in the active site of Lactobacillus casei dihydrofolate reductase in aqueous solution.
Journal of molecular biology 1992;226(2):549-54.
1992: Ioannis P Gerothanassis; Berry Birdsall; C J Bauer; James Feeney
31P-NMR assignment and conformational study of NADPH bound to Lactobacillus casei dihydrofolate reductase based on two-dimensional 1H-31P-heteronuclear and 1H-detected 1H-31P-shift-correlation experiments.
European journal of biochemistry / FEBS 1992;204(1):173-7.
1991: Ioannis P Gerothanassis; Berry Birdsall; James Feeney
Hydrogen bonding effects on 31P NMR shielding in the pyrophosphate group of NADPH bound to L. casei dihydrofolate reductase.
FEBS letters 1991;291(1):21-3.
1991: Mark D Carr; Berry Birdsall; Thomas A Frenkiel; C J Bauer; J Jimenez-Barbero; Vladimir Polshakov; J E McCormick; Gordon Roberts; James Feeney
Dihydrofolate reductase: sequential resonance assignments using 2D and 3D NMR and secondary structure determination in solution.
Biochemistry 1991;30(25):6330-41.
1990: Berry Birdsall; S J Tendler; J R Arnold; James Feeney; R J Griffin; Mark D Carr; J A Thomas; Gordon Roberts; M F Stevens
NMR studies of multiple conformations in complexes of Lactobacillus casei dihydrofolate reductase with analogues of pyrimethamine.
Biochemistry 1990;29(41):9660-7.
1990: James Feeney; Berry Birdsall; G Ostler; Mark D Carr; M Kairi
A novel method of preparing totally alpha-deuterated amino acids for selective incorporation into proteins. Application to assignment of 1H resonances of valine residues in dihydrofolate reductase.
FEBS letters 1990;272(1-2):197-9.
1990: Berry Birdsall; J R Arnold; J Jimenez-Barbero; Thomas A Frenkiel; C J Bauer; S J Tendler; Mark D Carr; J A Thomas; Gordon Roberts; James Feeney
The 1H-NMR assignments of the aromatic resonances in complexes of Lactobacillus casei dihydrofolate reductase and the origins of their chemical shifts.
European journal of biochemistry / FEBS 1990;191(3):659-68.
1989: M A Jimenez; J R Arnold; J Andrews; J A Thomas; Gordon Roberts; Berry Birdsall; James Feeney
Dihydrofolate reductase: control of the mode of substrate binding by aspartate 26.
Protein engineering 1989;2(8):627-31.
1989: J Andrews; Carol A Fierke; Berry Birdsall; G Ostler; James Feeney; Gordon Roberts; Stephen J Benkovic
A kinetic study of wild-type and mutant dihydrofolate reductases from Lactobacillus casei.
Biochemistry 1989;28(14):5743-50.
1989: Berry Birdsall; James Feeney; S J Tendler; S J Hammond; Gordon Roberts
Dihydrofolate reductase: multiple conformations and alternative modes of substrate binding.
Biochemistry 1989;28(5):2297-305.
1989: Berry Birdsall; J Andrews; G Ostler; S J Tendler; James Feeney; Gordon Roberts; Roger Wayne Davies; H T Cheung
NMR studies of differences in the conformations and dynamics of ligand complexes formed with mutant dihydrofolate reductases.
Biochemistry 1989;28(3):1353-62.
1988: S J Tendler; R J Griffin; Berry Birdsall; M F Stevens; Gordon Roberts; James Feeney
Direct 19F NMR observation of the conformational selection of optically active rotamers of the antifolate compound fluoronitropyrimethamine bound to the enzyme dihydrofolate reductase.
FEBS letters 1988;240(1-2):201-4.
1988: M S Searle; M J Forster; Berry Birdsall; Gordon Roberts; James Feeney; H T Cheung; I Kompis; A J Geddes
Dynamics of trimethoprim bound to dihydrofolate reductase.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(11):3787-91.
1987: S J Hammond; Berry Birdsall; James Feeney; M S Searle; Gordon Roberts; H T Cheung
Structural comparisons of complexes of methotrexate analogues with Lactobacillus casei dihydrofolate reductase by two-dimensional 1H NMR at 500 MHz.
Biochemistry 1987;26(26):8585-90.
1987: Berry Birdsall; J De Graw; James Feeney; S Hammond; M S Searle; Gordon Roberts; WT Colwell; J Crase
15N and 1H NMR evidence for multiple conformations of the complex of dihydrofolate reductase with its substrate, folate.
FEBS letters 1987;217(1):106-10.
1986: H T Cheung; M S Searle; James Feeney; Berry Birdsall; Gordon Roberts; I Kompis; S J Hammond
Trimethoprim binding to Lactobacillus casei dihydrofolate reductase: a 13C NMR study using selectively 13C-enriched trimethoprim.
Biochemistry 1986;25(8):1925-31.
1986: S J Hammond; Berry Birdsall; M S Searle; Gordon Roberts; James Feeney
Dihydrofolate reductase. 1H resonance assignments and coenzyme-induced conformational changes.
Journal of molecular biology 1986;188(1):81-97.
1986: M S Searle; S J Hammond; Berry Birdsall; Gordon Roberts; James Feeney; R W King; D V Griffiths
Identification of the 1H resonances of valine and leucine residues in dihydrofolate reductase by using a combination of selective deuteration and two-dimensional correlation spectroscopy.
FEBS letters 1986;194(1):165-70.
1984: Berry Birdsall; James Feeney; C Pascual; Gordon Roberts; I Kompis; Rudolf L Then; K Müller; A Kroehn
A 1H NMR study of the interactions and conformations of rationally designed brodimoprim analogues in complexes with Lactobacillus casei dihydrofolate reductase.
Journal of medicinal chemistry 1984;27(12):1672-6.
1984: Berry Birdsall; James Feeney; D V Griffiths; S Hammond; B Kimber; R W King; Gordon Roberts; M Searle
The combined use of selective deuteration and double resonance experiments in assigning the 1H resonances of valine and tyrosine residues of dihydrofolate reductase.
FEBS letters 1984;175(2):364-8.
1984: Berry Birdsall; A W Bevan; C Pascual; Gordon Roberts; James Feeney; A Gronenborn; G M Clore
Multinuclear NMR characterization of two coexisting conformational states of the Lactobacillus casei dihydrofolate reductase-trimethoprim-NADP+ complex.
Biochemistry 1984;23(20):4733-42.
1984: D J Antonjuk; Berry Birdsall; H T Cheung; G M Clore; James Feeney; A Gronenborn; Gordon Roberts; T Q Tran
A 1H n.m.r. study of the role of the glutamate moiety in the binding of methotrexate to Lactobacillus casei dihydrofolate reductase.
British journal of pharmacology 1984;81(2):309-15.
1983: Berry Birdsall; Gordon Roberts; James Feeney; J G Dann; A S Burgen
Trimethoprim binding to bacterial and mammalian dihydrofolate reductase: a comparison by proton and carbon-13 nuclear magnetic resonance.
Biochemistry 1983;22(24):5597-604.
1983: James Feeney; Berry Birdsall; Gordon Roberts; A S Burgen
Use of transferred nuclear Overhauser effect measurements to compare binding of coenzyme analogues to dihydrofolate reductase.
Biochemistry 1983;22(3):628-33.
1982: Berry Birdsall; A Gronenborn; E I Hyde; G M Clore; Gordon Roberts; James Feeney; A S Burgen
Hydrogen-1, carbon-13, and phosphorus-31 nuclear magnetic resonance studies of the dihydrofolate reductase-nicotinamide adenine dinucleotide phosphate-folate complex: characterization of three coexisting conformational states.
Biochemistry 1982;21(23):5831-8.
1981: Berry Birdsall; A S Burgen; E I Hyde; Gordon Roberts; James Feeney
Negative cooperativity between folinic acid and coenzyme in their binding to Lactobacillus casei dihydrofolate reductase.
Biochemistry 1981;20(25):7186-95.
1981: Berry Birdsall; A Gronenborn; G M Clore; Gordon Roberts; James Feeney; A S Burgen
13C NMR evidence for three slowly interconverting conformations of the dihydrofolate reductase-NADP+-folate complex.
Biochemical and biophysical research communications 1981;101(4):1139-44.
1981: A Gronenborn; Berry Birdsall; E Hyde; G Roberts; James Feeney; A Burgen
1H and 31P NMR characterization of two conformations of the trimethoprim-NADP+-dihydrofolate reductase complex.
Molecular pharmacology 1981;20(1):145-53.
1981: James Feeney; Berry Birdsall; J P Albrand; Gordon Roberts; A S Burgen; P A Charlton; D W Young
Hydrogen-1 nuclear magnetic resonance study of the complexes of two diastereoisomers of folinic acid with dihydrofolate reductase.
Biochemistry 1981;20(7):1837-42.
1981: A Gronenborn; Berry Birdsall; E I Hyde; Gordon Roberts; James Feeney; A S Burgen
Effects of coenzyme binding on histidine residues of Lactobacillus casei dihydrofolate reductase.
Biochemistry 1981;20(7):1717-22.
1980: Berry Birdsall; James Feeney; Gordon Roberts; A S Burgen
The use of saturation transfer NMR experiments to monitor the conformational selection accompanying ligand-protein interactions.
FEBS letters 1980;120(1):107-9.
1980: Berry Birdsall; A Gronenborn; E I Hyde; Gordon Roberts; James Feeney; A S Burgen
Demonstration and characterization of two co-existing conformations of an enzyme complex by n.m.r.
Biochemical Society transactions 1980;8(5):637.
1980: E I Hyde; Berry Birdsall; Gordon Roberts; James Feeney; A S Burgen
Phosphorus-31 nuclear magnetic resonance studies of the binding of oxidized coenzymes to Lactobacillus casei dihydrofolate reductase.
Biochemistry 1980;19(16):3746-54.
1980: E I Hyde; Berry Birdsall; Gordon Roberts; James Feeney; A S Burgen
Proton nuclear magnetic resonance saturation transfer studies of coenzyme binding to Lactobacillus casei dihydrofolate reductase.
Biochemistry 1980;19(16):3738-46.
1980: Berry Birdsall; A S Burgen; Gordon Roberts
Effects of coenzyme analogues on the binding of p-aminobenzoyl-L-glutamate and 2,4-diaminopyrimidine to Lactobacillus casei dihydrofolate reductase.
Biochemistry 1980;19(16):3732-7.
1980: Berry Birdsall; A S Burgen; Gordon Roberts
Binding of coenzyme analogues to Lactobacillus casei dihydrofolate reductase: binary and ternary complexes.
Biochemistry 1980;19(16):3723-31.
1980: P Wyeth; A Gronenborn; Berry Birdsall; Gordon Roberts; James Feeney; A S Burgen
Histidine residues of Lactobacillus casei dihydrofolate reductase: paramagnetic relaxation and deuterium-exchange studies and partial assignments.
Biochemistry 1980;19(12):2608-15.
1980: James Feeney; Gordon Roberts; R Kaptein; Berry Birdsall; A Gronenborn; A S Burgen
Photo-CIDNP studies of the influence of ligand binding on the surface accessibility of aromatic residues in dihydrofolate reductase.
Biochemistry 1980;19(11):2466-72.