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Marco Salemi

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TOP 3
Rebecca R Gray; Marco Salemi
Integrative molecular phylogeography in the context of infectious diseases on the human-animal interface.
Andrew J Tatem; Rebecca R Gray; Joris Hemelaar; Marco Salemi
Spatial accessibility and the spread of HIV-1 subtypes and recombinants.
Rebecca R Gray; Stanley M Lemon; David R Nelson; Oliver G Pybus; Michael W Fried; Maureen M Goodenow; Samantha L Strickland; Nazle M Veras; Marco Salemi
Unexpected maintenance of hepatitis C viral diversity following liver transplantation.

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All Publications

2012: Rebecca R Gray; Marco Salemi
Integrative molecular phylogeography in the context of infectious diseases on the human-animal interface.
Parasitology 2012;139(14):1939-51.
2012: Andrew J Tatem; Rebecca R Gray; Joris Hemelaar; Marco Salemi
Spatial accessibility and the spread of HIV-1 subtypes and recombinants.
AIDS (London, England) 2012;26(18):2351-60.
2012: Rebecca R Gray; Stanley M Lemon; David R Nelson; Oliver G Pybus; Michael W Fried; Maureen M Goodenow; Samantha L Strickland; Nazle M Veras; Marco Salemi
Unexpected maintenance of hepatitis C viral diversity following liver transplantation.
Journal of virology 2012;86(16):8432-9.
2012: Samantha L Strickland; Kenneth Williams; Xavier Alvarez; Tricia H Burdo; Maureen M Goodenow; Rebecca R Gray; Ellen Huenink; Susanna Lamers; Cecily C Midkiff; David J Nolan; Brian Nowlin; Marco Salemi
Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology.
The Journal of general virology 2012;93(Pt 5):925-38.
2012: Li Yin; William G Farmerie; Brent P Gardner; Wei Hou; Li Liu; Amanda C Lowe; Marco Salemi; John W Sleasman; Yijun Sun; Wilton B Williams; Maureen M Goodenow
High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems.
Retrovirology 2012;9():108.
2012: Rebecca R Gray; Paul Klenerman; Marco Salemi; Oliver G Pybus
A new evolutionary model for hepatitis C virus chronic infection.
PLoS pathogens 2012;8(5):e1002656.
2012: Mohammed Akrim; Patrice Andre; Taj Azarian; Robert L Cook; Elmir Elharti; Rebecca R Gray; Sanae Lemrabet; Marco Salemi; Jean Claude Tardy; Rajae El Aouad
HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005.
AIDS research and therapy 2012;9(1):5.
2011: Samantha L Strickland; Kenneth Williams; Xavier Alvarez; Tricia H Burdo; Maureen M Goodenow; Rebecca R Gray; Ellen Huenink; Susanna Lamers; Cecily C Midkiff; David J Nolan; Brian Nowlin; Marco Salemi
Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources.
AIDS research and human retroviruses 2011;27(12):1327-32.
2011: Nazle Mendonca Collaço Véras; Romina Salpini; Maria Mercedes Santoro; Desiré Takou; Andrew J Tatem; Judith Torimiro; Annapaola Callegaro; giulia cappelli; Massimo Ciccozzi; Vittorio Colizzi; Roberta D'Arrigo; Maureen M Goodenow; Rebecca R Gray; Alessandra Lo Presti; Flaminia Olearo; Carlo Federico Perno; Gianluca Russo; Marco Salemi
Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and African patients living in Italy.
AIDS research and human retroviruses 2011;27(11):1173-82.
2011: Massimo Ciccozzi; Anna Rita Ciccaglione; Tulay Yalcinkaya; Zeynep Pinar Taskan; Michele Equestre; Angela Costantino; Roberto Bruni; Erika Ebranati; Marco Salemi; Rebecca Gray; Giovanni Rezza; Massimo Galli; Alessandra Lo Presti; Gianguglielmo Zehender
Reconstruction of the evolutionary dynamics of the hepatitis C virus 1b epidemic in Turkey.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2011;11(5):863-8.
2011: Rebecca R Gray; Andrew Tatem; Judith A Johnson; Alexander V Alekseyenko; Oliver G Pybus; Marc A Suchard; Marco Salemi
Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework.
Molecular biology and evolution 2011;28(5):1593-603.
2011: Marco Salemi
Toward a robust monitoring of HIV subtypes distribution worldwide.
AIDS (London, England) 2011;25(5):713-4.
2011: Rebecca R Gray; Aris Katzourakis; Philippe Lemey; Joe Parker; Marco Salemi; Oliver G Pybus
The mode and tempo of hepatitis C virus evolution within and among hosts.
BMC evolutionary biology 2011;11():131.
2011: Susanna Lamers; Rebecca R Gray; Marco Salemi; Leanne C Huysentruyt; Michael S McGrath
HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2011;11(1):31-7.
2010: Rebecca R Gray; N M C Veras; L A Santos; Marco Salemi
Evolutionary characterization of the West Nile Virus complete genome.
Molecular phylogenetics and evolution 2010;56(1):195-200.
2009: Rebecca R Gray; Andrew J Tatem; Susanna Lamers; Wei Hou; Oliver Laeyendecker; David Serwadda; Nelson Sewankambo; Ronald H Gray; Maria J Wawer; Thomas C Quinn; Maureen M Goodenow; Marco Salemi
Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.
AIDS (London, England) 2009;23(14):F9-F17.
2009: Marco Salemi; Susanna Lamers; Leanne C Huysentruyt; Derek Galligan; Rebecca R Gray; Alanna Morris; Michael S McGrath
Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma.
PloS one 2009;4(12):e8153.
2009: William Switzer; Marco Salemi; Shoukat H Qari; Hongwei Jia; Rebecca R Gray; Aris Katzourakis; Susan J Marriott; Kendle N Pryor; Nathan D Wolfe; Donald S. Burke; Thomas M Folks; Walid Heneine
Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4.
Retrovirology 2009;6():9.
2008: Marco Salemi; Rebecca R Gray; Maureen M Goodenow
An exploratory algorithm to identify intra-host recombinant viral sequences.
Molecular phylogenetics and evolution 2008;49(2):618-28.
2008: Marco Salemi; Maureen M Goodenow; Stefania Montieri; Tulio De Oliveira; Maria Mercedes Santoro; Danail Beshkov; Ivailo Alexiev; Ivailo Elenkov; Ivan Elenkov; Tsvetana Yakimova; Tonka Varleva; Giovanni Rezza; Massimo Ciccozzi
The HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries.
AIDS research and human retroviruses 2008;24(6):771-9.
2008: Marco Salemi; Tulio De Oliveira; Massimo Ciccozzi; Giovanni Rezza; Maureen M Goodenow
High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania.
PloS one 2008;3(1):e1390.
2007: Massimo Ciccozzi; Stefania Montieri; Marco Salemi; Tulio De Oliveira; Maria Dorrucci; Alessandro Sinicco; Andrea De Luca; Massimo Giuliani; Claudia Balotta; Giovanni Rezza
An outbreak of HIV-1 subtype G among Italian injecting drug users.
AIDS (London, England) 2007;21(9):1213-5.
2007: Marco Salemi; Brant R Burkhardt; Rebecca R Gray; Guity Ghaffari; John W Sleasman; Maureen M Goodenow
Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies.
PloS one 2007;2(9):e950.
2006: Tulio De Oliveira; Oliver G Pybus; Andrew Rambaut; Marco Salemi; Sharon Cassol; Massimo Ciccozzi; Giovanni Rezza; Guido Gattinara Castelli; Roberta D'Arrigo; Massimo Amicosante; Luc Perrin; Vittorio Colizzi; Carlo Federico Perno
Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak.
Nature 2006;444(7121):836-7.
2006: Laura Campitelli; Massimo Ciccozzi; Marco Salemi; Fabiana Taglia; Stefano Boros; Isabella Donatelli; Giovanni Rezza
H5N1 influenza virus evolution: a comparison of different epidemics in birds and humans (1997-2004).
The Journal of general virology 2006;87(Pt 4):955-60.
2005: Marco Salemi; Susanna Lamers; Stephanie Yu; Tulio De Oliveira; Walter M Fitch; Michael S McGrath
Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS.
Journal of virology 2005;79(17):11343-52.
2005: Marco Salemi; Tulio De Oliveira; Marcelo A Soares; Oliver G Pybus; Ana T Dumans; Anne-Mieke Vandamme; Amilcar Tanuri; Sharon Cassol; Walter M Fitch
Different epidemic potentials of the HIV-1B and C subtypes.
Journal of molecular evolution 2005;60(5):598-605.
2005: William Switzer; Marco Salemi; Vedapuri Shanmugam; Feng Gao; Mian-Er Cong; Carla Kuiken; Vinod Bhullar; Brigitte E Beer; Dominique Vallet; Annie Gautier-Hion; Zena Tooze; Francios VILLINGER; Edward C Holmes; Walid Heneine
Ancient co-speciation of simian foamy viruses and primates.
Nature 2005;434(7031):376-80.
2004: Tulio De Oliveira; Marco Salemi; Michelle Gordon; Anne-Mieke Vandamme; Estrelita Janse van Rensburg; Susan Engelbrecht; Hoosen M Coovadia; Sharon Cassol
Mapping sites of positive selection and amino acid diversification in the HIV genome: an alternative approach to vaccine design?
Genetics 2004;167(3):1047-58.
2004: Sonia Van Dooren; Oliver G Pybus; Marco Salemi; HF Liu; Patrick Goubau; Carlos Remondegui; A Talarmin; Eduardo Gotuzzo; Luiz C J Alcantara; Bernardo Galvão-Castro; Anne-Mieke Vandamme
The low evolutionary rate of human T-cell lymphotropic virus type-1 confirmed by analysis of vertical transmission chains.
Molecular biology and evolution 2004;21(3):603-11.
2004: Marco Salemi; Walter M Fitch; Massimo Ciccozzi; Maria Jose Ruiz-Alvarez; Giovanni Rezza; Martha J Lewis
Severe acute respiratory syndrome coronavirus sequence characteristics and evolutionary rate estimate from maximum likelihood analysis.
Journal of virology 2004;78(3):1602-3.
2003: Dimitrios Paraskevis; Philippe Lemey; Marco Salemi; M Suchard; Y Van De Peer; Anne-Mieke Vandamme
Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using bayesian inference: implications for the origin of HIV-1.
Molecular biology and evolution 2003;20(12):1986-96.
2003: Philippe Lemey; Marco Salemi; Bin Wang; Margaret Duffy; William H Hall; Nitin K Saksena; Anne-Mieke Vandamme
Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions.
FEMS immunology and medical microbiology 2003;39(2):125-32.
2003: Marco Salemi; Tulio De Oliveira; Valerie Courgnaud; Vincent Moulton; Barbara Holland; Sharon Cassol; William Switzer; Anne-Mieke Vandamme
Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses.
Journal of virology 2003;77(13):7202-13.
2003: Luiz C J Alcantara; Nice Shindo; Sonia Van Dooren; Marco Salemi; Maria Cecília Costa; Simone Kashima; Dimas Tadeu Covas; Anne-Mieke Vandamme; Bernardo Galvão-Castro
Brazilian HTLV type 2a strains from intravenous drug users (IDUs) appear to have originated from two sources: Brazilian Amerindians and European/North American IDUs.
AIDS research and human retroviruses 2003;19(6):519-23.
2003: Kenneth E Robbins; Philippe Lemey; Oliver G Pybus; Harold W Jaffe; Ae Youngpairoj; Teresa M Brown; Marco Salemi; Anne-Mieke Vandamme; Marcia L Kalish
U.S. Human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains.
Journal of virology 2003;77(11):6359-66.
2003: Philippe Lemey; Oliver G Pybus; Bin Wang; Nitin K Saksena; Marco Salemi; Anne-Mieke Vandamme
Tracing the origin and history of the HIV-2 epidemic.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6588-92.
2002: Margaret Duffy; Marco Salemi; Noreen Sheehy; Anne-Mieke Vandamme; John E Hegarty; Michael Curry; Niamh Nolan; Dermot Kelleher; Susan M McKiernan; William W Hall
Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection.
Virology 2002;301(2):354-64.
2002: Valerie Courgnaud; Marco Salemi; Xavier Pourrut; Eitel Mpoudi-Ngole; Bernadette Abela; Philippe Auzel; Frederic Bibollet-Ruche; Beatrice Hahn; Anne-Mieke Vandamme; Eric Delaporte; Martine Peeters
Characterization of a novel simian immunodeficiency virus with a vpu gene from greater spot-nosed monkeys (Cercopithecus nictitans) provides new insights into simian/human immunodeficiency virus phylogeny.
Journal of virology 2002;76(16):8298-309.
2002: Philippe Lemey; Marco Salemi; Leda Bassit; Anne-Mieke Vandamme
Phylogenetic classification of TT virus groups based on the N22 region is unreliable.
Virus research 2002;85(1):47-59.
2002: Martha J Lewis; Noreen Sheehy; Marco Salemi; Anne-Mieke Vandamme; William W Hall
Comparison of CREB- and NF-kappaB-mediated transactivation by human T lymphotropic virus type II (HTLV-II) and type I (HTLV-I) tax proteins.
Virology 2002;295(1):182-9.
2002: Nice Shindo; Luiz C J Alcantara; Sonia Van Dooren; Marco Salemi; Maria Cecília Costa; Simone Kashima; Dimas Tadeu Covas; Antônio Teva; Marco Pellegrini; Ivo Brito; Anne-Mieke Vandamme; Bernardo Galvão-Castro
Human retroviruses (HIV and HTLV) in Brazilian Indians: seroepidemiological study and molecular epidemiology of HTLV type 2 isolates.
AIDS research and human retroviruses 2002;18(1):71-7.
2002: Marco Salemi; Anne-Mieke Vandamme
Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences.
Journal of molecular evolution 2002;54(1):62-70.
2001: Sonia Van Dooren; Marco Salemi; Xavier Pourrut; Martine Peeters; Eric Delaporte; Marc Van Ranst; Anne-Mieke Vandamme
Evidence for a second simian T-cell lymphotropic virus type 3 in Cercopithecus nictitans from Cameroon.
Journal of virology 2001;75(23):11939-41.
2001: Sonia Van Dooren; Marco Salemi; Anne-Mieke Vandamme
Dating the origin of the African human T-cell lymphotropic virus type-i (HTLV-I) subtypes.
Molecular biology and evolution 2001;18(4):661-71.
2001: Marco Salemi; K Strimmer; William W Hall; Margaret Duffy; Eric Delaporte; S Mboup; Martine Peeters; Anne-Mieke Vandamme
Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2001;15(2):276-8.
2000: Anne-Mieke Vandamme; Umberto Bertazzoni; Marco Salemi
Evolutionary strategies of human T-cell lymphotropic virus type II.
Gene 2000;261(1):171-80.
2000: Martha J Lewis; P Novoa; Ricardo Ishak; M O G Ishak; Marco Salemi; Anne-Mieke Vandamme; Mark H Kaplan; William W Hall
Isolation, cloning, and complete nucleotide sequence of a phenotypically distinct Brazilian isolate of human T-lymphotropic virus type II (HTLV-II).
Virology 2000;271(1):142-54.
2000: Marco Salemi; Jan Desmyter; Anne-Mieke Vandamme
Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences.
Molecular biology and evolution 2000;17(3):374-86.
2000: Jean-Pierre Allain; Y Dong; Anne-Mieke Vandamme; Vincent Moulton; Marco Salemi
Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: studies of infected donor-recipient clusters.
Journal of virology 2000;74(6):2541-9.
1999: Marco Salemi; M Lewis; J F Egan; William W Hall; Jan Desmyter; Anne-Mieke Vandamme
Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(23):13253-8.
1999: Michel van Brussel; Marco Salemi; HF Liu; Patrick Goubau; Jan Desmyter; Anne-Mieke Vandamme
The discovery of two new divergent STLVs has implications for the evolution and epidemiology of HTLVs.
Reviews in medical virology 1999;9(3):155-70.
1999: Marco Salemi; Anne-Mieke Vandamme; Jan Desmyter; Claudio Casoli; Umberto Bertazzoni
The origin and evolution of human T-cell lymphotropic virus type II (HTLV-II) and the relationship with its replication strategy.
Gene 1999;234(1):11-21.
1998: Anne-Mieke Vandamme; Marco Salemi; Jan Desmyter
The simian origins of the pathogenic human T-cell lymphotropic virus type I.
Trends in microbiology 1998;6(12):477-83.
1998: Sonia Van Dooren; Eduardo Gotuzzo; Marco Salemi; D Watts; E Audenaert; S Duwe; Heinz Ellerbrok; R Grassmann; E Hagelberg; Jan Desmyter; Anne-Mieke Vandamme
Evidence for a post-Columbian introduction of human T-cell lymphotropic virus [type I] [corrected] in Latin America.
The Journal of general virology 1998;79 ( Pt 11)():2695-708.
1998: Heinz Ellerbrok; Carola Fleischer; Marco Salemi; P Reinhardt; W D Ludwig; Anne-Mieke Vandamme; Georg Pauli
Sequence analysis of the first HTLV-I infection in Germany without relations to endemic areas.
AIDS research and human retroviruses 1998;14(13):1199-203.
1998: Marco Salemi; Sonia Van Dooren; E Audenaert; Eric Delaporte; Patrick Goubau; Jan Desmyter; Anne-Mieke Vandamme
Two new human T-lymphotropic virus type I phylogenetic subtypes in seroindeterminates, a Mbuti pygmy and a Gabonese, have closest relatives among African STLV-I strains.
Virology 1998;246(2):277-87.
1998: Anne-Mieke Vandamme; Marco Salemi; Michel van Brussel; HF Liu; Kristel Van Laethem; Marc Van Ranst; L Michels; Jan Desmyter; Patrick Goubau
African origin of human T-lymphotropic virus type 2 (HTLV-2) supported by a potential new HTLV-2d subtype in Congolese Bambuti Efe Pygmies.
Journal of virology 1998;72(5):4327-40.
1998: Marco Salemi; Anne-Mieke Vandamme; C Gradozzi; Kristel Van Laethem; E Cattaneo; G Taylor; Claudio Casoli; Patrick Goubau; Jan Desmyter; Umberto Bertazzoni
Evolutionary rate and genetic heterogeneity of human T-cell lymphotropic virus type II (HTLV-II) using isolates from European injecting drug users.
Journal of molecular evolution 1998;46(5):602-11.
1998: Michel van Brussel; Marco Salemi; HF Liu; Jan Gabriels; Patrick Goubau; Jan Desmyter; Anne-Mieke Vandamme
The simian T-lymphotropic virus STLV-PP1664 from Pan paniscus is distinctly related to HTLV-2 but differs in genomic organization.
Virology 1998;243(2):366-79.
1996: Marco Salemi; Anne-Mieke Vandamme; F Guano; C Gradozzi; E Cattaneo; Claudio Casoli; Umberto Bertazzoni
Complete nucleotide sequence of the Italian human T-cell lymphotropic virus type II isolate Gu and phylogenetic identification of a possible origin of South European epidemics.
The Journal of general virology 1996;77 ( Pt 6)():1193-201.
1995: Marco Salemi; E Cattaneo; Claudio Casoli; Umberto Bertazzoni
Identification of IIa and IIb molecular subtypes of human T-cell lymphotropic virus type II among Italian injecting drug users.
Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association 1995;8(5):516-20.
1993: Davide Zella; A Cavicchini; Marco Salemi; Claudio Casoli; F Lori; G Achilli; E Cattaneo; V Landini; Umberto Bertazzoni
Molecular characterization of two isolates of human T cell leukaemia virus type II from Italian drug abusers and comparison of genome structure with other isolates.
The Journal of general virology 1993;74 ( Pt 3)():437-44.