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Dinakar Salunke

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Publications

TOP 3
Arijit Bhowmick; Dinakar M Salunke
Limited conformational flexibility in the paratope may be responsible for degenerate specificity of HIV epitope recognition.
Tarique Khan; Dinakar M Salunke
Structural elucidation of the mechanistic basis of degeneracy in the primary humoral response.
Divya Tomar; Rajiv Ranjan Singh; Avadhesha Surolia; Sarika Gupta; Tarique Khan; Satyendra Mishra; Dinakar M Salunke
Crystallographic study of novel transthyretin ligands exhibiting negative-cooperativity between two thyroxine binding sites.

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All Publications

2013: Arijit Bhowmick; Dinakar M Salunke
Limited conformational flexibility in the paratope may be responsible for degenerate specificity of HIV epitope recognition.
International immunology 2013;25(2):77-90.
2012: Tarique Khan; Dinakar M Salunke
Structural elucidation of the mechanistic basis of degeneracy in the primary humoral response.
Journal of immunology (Baltimore, Md. : 1950) 2012;188(4):1819-27.
2012: Divya Tomar; Rajiv Ranjan Singh; Avadhesha Surolia; Sarika Gupta; Tarique Khan; Satyendra Mishra; Dinakar M Salunke
Crystallographic study of novel transthyretin ligands exhibiting negative-cooperativity between two thyroxine binding sites.
PloS one 2012;7(9):e43522.
2011: Vineet Gaur; Veenu Chanana; Abha Jain; Dinakar M Salunke
The structure of a haemopexin-fold protein from cow pea (Vigna unguiculata) suggests functional diversity of haemopexins in plants.
Acta crystallographica. Section F, Structural biology and crystallization communications 2011;67(Pt 2):193-200.
2010: Suvendu Lomash; Sushma Nagpal; Dinakar M Salunke
An antibody as surrogate receptor reveals determinants of activity of an innate immune peptide antibiotic.
The Journal of biological chemistry 2010;285(46):35750-8.
2010: Suman Tapryal; Lavanya Krishnan; Janendra K Batra; kanwal jeet kaur; Dinakar M Salunke
Cloning, expression and efficient refolding of carbohydrate-peptide mimicry recognizing single chain antibody 2D10.
Protein expression and purification 2010;72(2):162-8.
2010: Vineet Gaur; Insaf A Qureshi; Apekshita Singh; Veenu Chanana; Dinakar M Salunke
Crystal structure and functional insights of hemopexin fold protein from grass pea.
Plant physiology 2010;152(4):1842-50.
2010: Vibha Gupta; Rakesh K Gupta; Garima Khare; Dinakar M Salunke; Avadhesha Surolia; Anil K Tyagi
Structural ordering of disordered ligand-binding loops of biotin protein ligase into active conformations as a consequence of dehydration.
PloS one 2010;5(2):e9222.
2009: Vibha Gupta; Rakesh K Gupta; Garima Khare; Dinakar M Salunke; Anil K Tyagi
Crystal structure of Bfr A from Mycobacterium tuberculosis: incorporation of selenomethionine results in cleavage and demetallation of haem.
PloS one 2009;4(11):e8028.
2008: Pankaj Gupta; Vineet Gaur; Dinakar M Salunke
Purification, identification and preliminary crystallographic studies of a 2S albumin seed protein from Lens culinaris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 8):733-6.
2008: Vibha Gupta; Rakesh K Gupta; Garima Khare; Avadhesha Surolia; Dinakar M Salunke; Anil K Tyagi
Crystallization and preliminary X-ray diffraction analysis of biotin acetyl-CoA carboxylase ligase (BirA) from Mycobacterium tuberculosis.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 6):524-7.
2008: Vibha Gupta; Rakesh K Gupta; Garima Khare; Dinakar M Salunke; Anil K Tyagi
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analysis of bacterioferritin A from Mycobacterium tuberculosis.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 5):398-401.
2008: kanwal jeet kaur; Pampi Sarkar; Sushma Nagpal; Tarique Khan; Dinakar M Salunke
Structure-function analyses involving palindromic analogs of tritrypticin suggest autonomy of anti-endotoxin and antibacterial activities.
Protein science : a publication of the Protein Society 2008;17(3):545-54.
2008: Lavanya Krishnan; Gaurav Sahni; kanwal jeet kaur; Dinakar M Salunke
Role of antibody paratope conformational flexibility in the manifestation of molecular mimicry.
Biophysical journal 2008;94(4):1367-76.
2008: Vineet Gaur; Dhruv Sethi; Dinakar M Salunke
Purification, identification and preliminary crystallographic studies of Pru du amandin, an allergenic protein from Prunus dulcis.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 1):32-5.
2008: Ranjna C Dutta; Sushma Nagpal; Dinakar M Salunke
Functional mapping of apidaecin through secondary structure correlation.
The international journal of biochemistry & cell biology 2008;40(5):1005-15.
2008: Niladri Ganguly; Pham H Giang; Chitra Gupta; Sandip K Basu; Imran Siddiqui; Dinakar M Salunke; Pawan Sharma
Mycobacterium tuberculosis secretory proteins CFP-10, ESAT-6 and the CFP10:ESAT6 complex inhibit lipopolysaccharide-induced NF-kappaB transactivation by downregulation of reactive oxidative species (ROS) production.
Immunology and cell biology 2008;86(1):98-106.
2007: Lavanya Krishnan; Suvendu Lomash; Beena Patricia Jeevan Raj; kanwal jeet kaur; Dinakar M Salunke
Paratope plasticity in diverse modes facilitates molecular mimicry in antibody response.
Journal of immunology (Baltimore, Md. : 1950) 2007;178(12):7923-31.
2007: kanwal jeet kaur; Shashank Pandey; Dinakar M Salunke
Design of a functionally equivalent nonglycosylated analog of the glycopeptide antibiotic formaecin I.
Protein science : a publication of the Protein Society 2007;16(2):309-15.
2006: Insaf A Qureshi; Dhruv Sethi; Dinakar M Salunke
Purification, identification and preliminary crystallographic studies of an allergenic protein from Lathyrus sativus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 9):869-72.
2006: Dhruv Sethi; Anupriya Agarwal; Venkatasamy Manivel; Kanury V S Rao; Dinakar M Salunke
Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response.
Immunity 2006;24(4):429-38.
2005: Manisha Goel; Rajani S Damai; Dhruv Sethi; kanwal jeet kaur; Bhaskar G Maiya; Musti J Swamy; Dinakar M Salunke
Crystal structures of the PNA-porphyrin complex in the presence and absence of lactose: mapping the conformational changes on lactose binding, interacting surfaces, and supramolecular aggregations.
Biochemistry 2005;44(15):5588-96.
2004: Manisha Goel; Lavanya Krishnan; Surinder Kaur; kanwal jeet kaur; Dinakar M Salunke
Plasticity within the antigen-combining site may manifest as molecular mimicry in the humoral immune response.
Journal of immunology (Baltimore, Md. : 1950) 2004;173(12):7358-67.
2004: Veenu Chanana; kanwal jeet kaur; Dinakar M Salunke
Purification, identification and preliminary crystallographic characterization of a novel seed protein from Vigna unguiculata.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 11):2100-3.
2004: Babal Kant Jha; Nivedita Mitra; Rachita Rana; Avadhesha Surolia; Dinakar M Salunke; Kasturi Datta
pH and cation-induced thermodynamic stability of human hyaluronan binding protein 1 regulates its hyaluronan affinity.
The Journal of biological chemistry 2004;279(22):23061-72.
2004: Paramita Chakrabarty; Dhruv Sethi; Narendra Padhan; kanwal jeet kaur; Dinakar M Salunke; Sudha Bhattacharya; Alok Bhattacharya
Identification and characterization of EhCaBP2. A second member of the calcium-binding protein family of the protozoan parasite Entamoeba histolytica.
The Journal of biological chemistry 2004;279(13):12898-908.
2004: Manisha Goel; P Anuradha; kanwal jeet kaur; Bhaskar G Maiya; Musti J Swamy; Dinakar M Salunke
Porphyrin binding to jacalin is facilitated by the inherent plasticity of the carbohydrate-binding site: novel mode of lectin-ligand interaction.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 2):281-8.
2003: Babal Kant Jha; Dinakar M Salunke; Kasturi Datta
Structural flexibility of multifunctional HABP1 may be important for regulating its binding to different ligands.
The Journal of biological chemistry 2003;278(30):27464-72.
2003: Deepak T Nair; kanwal jeet kaur; Kavita Singh; Paushali Mukherjee; Deepa Rajagopal; Anna George; Vineeta Bal; Satyajit Rath; Kanury V S Rao; Dinakar M Salunke
Mimicry of native peptide antigens by the corresponding retro-inverso analogs is dependent on their intrinsic structure and interaction propensities.
Journal of immunology (Baltimore, Md. : 1950) 2003;170(3):1362-73.
2002: Sushma Nagpal; kanwal jeet kaur; Deepti Jain; Dinakar M Salunke
Plasticity in structure and interactions is critical for the action of indolicidin, an antibacterial peptide of innate immune origin.
Protein science : a publication of the Protein Society 2002;11(9):2158-67.
2002: Subhra Chakraborty; Niranjan Chakraborty; Deepti Jain; Dinakar M Salunke; Asis Datta
Active site geometry of oxalate decarboxylase from Flammulina velutipes: Role of histidine-coordinated manganese in substrate recognition.
Protein science : a publication of the Protein Society 2002;11(9):2138-47.
2002: Pradnya Gangatirkar; Sunil Gangadharan; Anita Narendranath; Sushma Nagpal; Dinakar M Salunke; Anjali A Karande
Monoclonal antibodies to gonadotropin-releasing hormone (GnRH) inhibit binding of the hormone to its receptor.
Hybridoma and hybridomics 2002;21(4):281-6.
2002: Venkatasamy Manivel; Fahri Bayiroglu; Zaved Siddiqui; Dinakar M Salunke; Kanury V S Rao
The primary antibody repertoire represents a linked network of degenerate antigen specificities.
Journal of immunology (Baltimore, Md. : 1950) 2002;169(2):888-97.
2002: Tummala Hemachand; Bagavathi Gopalakrishnan; Dinakar M Salunke; Satish Totey; Chandrima Shaha
Sperm plasma-membrane-associated glutathione S-transferases as gamete recognition molecules.
Journal of cell science 2002;115(Pt 10):2053-65.
2002: Deepak T Nair; Kavita Singh; Zaved Siddiqui; Bishnu P Nayak; Kanury V S Rao; Dinakar M Salunke
Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response.
Journal of immunology (Baltimore, Md. : 1950) 2002;168(5):2371-82.
2002: Babal Kant Jha; Dinakar M Salunke; Kasturi Datta
Disulfide bond formation through Cys186 facilitates functionally relevant dimerization of trimeric hyaluronan-binding protein 1 (HABP1)/p32/gC1qR.
European journal of biochemistry / FEBS 2002;269(1):298-306.
2001: D Jain; Deepak T Nair; Ganesh Jawahar Swaminathan; EG Abraham; Javaregowda Nagaraju; Dinakar M Salunke
Structure of the induced antibacterial protein from tasar silkworm, Antheraea mylitta. Implications to molecular evolution.
The Journal of biological chemistry 2001;276(44):41377-82.
2001: Manisha Goel; Deepti Jain; kanwal jeet kaur; Roopa Kenoth; Bhaskar G Maiya; Musti J Swamy; Dinakar M Salunke
Functional equality in the absence of structural similarity: an added dimension to molecular mimicry.
The Journal of biological chemistry 2001;276(42):39277-81.
2001: Deepti Jain; kanwal jeet kaur; Dinakar M Salunke
Enhanced binding of a rationally designed peptide ligand of concanavalin a arises from improved geometrical complementarity.
Biochemistry 2001;40(40):12059-66.
2001: R Kumar; N R Choudhury; Dinakar M Salunke; Kasturi Datta
Evidence for clustered mannose as a new ligand for hyaluronan- binding protein (HABP1) from human fibroblasts.
Journal of biosciences 2001;26(3):325-32.
2001: SK Nayak; Shveta Bagga; Deepak Gaur; Deepak T Nair; Dinakar M Salunke; Janendra K Batra
Mechanism of specific target recognition and RNA hydrolysis by ribonucleolytic toxin restrictocin.
Biochemistry 2001;40(31):9115-24.
2001: Deepti Jain; kanwal jeet kaur; Dinakar M Salunke
Plasticity in protein-peptide recognition: crystal structures of two different peptides bound to concanavalin A.
Biophysical journal 2001;80(6):2912-21.
2001: kanwal jeet kaur; Deepti Jain; Manisha Goel; Dinakar M Salunke
Immunological implications of structural mimicry between a dodecapeptide and a carbohydrate moiety.
Vaccine 2001;19(23-24):3124-30.
2001: GB Chavali; C Vijayalakshmi; Dinakar M Salunke
Analysis of sequence signature defining functional specificity and structural stability in helix-loop-helix proteins.
Proteins 2001;42(4):471-80.
2000: Deepak T Nair; Kavita Singh; N Sahu; Kanury V S Rao; Dinakar M Salunke
Crystal structure of an antibody bound to an immunodominant peptide epitope: novel features in peptide-antibody recognition.
Journal of immunology (Baltimore, Md. : 1950) 2000;165(12):6949-55.
2000: Venkatasamy Manivel; N C Sahoo; Dinakar M Salunke; Kanury V S Rao
Maturation of an antibody response is governed by modulations in flexibility of the antigen-combining site.
Immunity 2000;13(5):611-20.
2000: Deepti Jain; kanwal jeet kaur; Manisha Goel; Dinakar M Salunke
Structural basis of functional mimicry between carbohydrate and peptide ligands of con A.
Biochemical and biophysical research communications 2000;272(3):843-9.
2000: Deepti Jain; K Kaur; B Sundaravadivel; Dinakar M Salunke
Structural and functional consequences of peptide-carbohydrate mimicry. Crystal structure of a carbohydrate-mimicking peptide bound to concanavalin A.
The Journal of biological chemistry 2000;275(21):16098-102.
1999: Sushma Nagpal; V Gupta; kanwal jeet kaur; Dinakar M Salunke
Structure-function analysis of tritrypticin, an antibacterial peptide of innate immune origin.
The Journal of biological chemistry 1999;274(33):23296-304.
1999: S B Mukherjee; S Aravinda; Bagavathi Gopalakrishnan; Sushma Nagpal; Dinakar M Salunke; Chandrima Shaha
Secretion of glutathione S-transferase isoforms in the seminiferous tubular fluid, tissue distribution and sex steroid binding by rat GSTM1.
The Biochemical journal 1999;340 ( Pt 1)():309-20.
1999: V Gupta; Serge Muyldermans; L Wyns; Dinakar M Salunke
The crystal structure of recombinant rat pancreatic RNase A.
Proteins 1999;35(1):1-12.
1998: Bagavathi Gopalakrishnan; S Aravinda; C H Pawshe; Satish Totey; Sushma Nagpal; Dinakar M Salunke; Chandrima Shaha
Studies on glutathione S-transferases important for sperm function: evidence of catalytic activity-independent functions.
The Biochemical journal 1998;329 ( Pt 2)():231-41.
1997: GB Chavali; Sushma Nagpal; Subeer S Majumdar; Om Singh; Dinakar M Salunke
Helix-loop-helix motif in GnRH associated peptide is critical for negative regulation of prolactin secretion.
Journal of molecular biology 1997;272(5):731-40.
1997: N Grewal; Sushma Nagpal; GB Chavali; Subeer S Majumdar; R Pal; Dinakar M Salunke
Ligand-induced receptor dimerization may be critical for signal transduction by choriogonadotropin.
Biophysical journal 1997;73(3):1190-7.
1997: S Khurana; V Raghunathan; Dinakar M Salunke
The variable domain glycosylation in a monoclonal antibody specific to GnRH modulates antigen binding.
Biochemical and biophysical research communications 1997;234(2):465-9.
1997: kanwal jeet kaur; S Khurana; Dinakar M Salunke
Topological analysis of the functional mimicry between a peptide and a carbohydrate moiety.
The Journal of biological chemistry 1997;272(9):5539-43.
1995: S Aravinda; Bagavathi Gopalakrishnan; C S Dey; Satish Totey; C H Pawshe; Dinakar M Salunke; K Kaur; Chandrima Shaha
A testicular protein important for fertility has glutathione S-transferase activity and is localized extracellularly in the seminiferous tubules.
The Journal of biological chemistry 1995;270(26):15675-85.
1995: E G Abraham; Javaregowda Nagaraju; Dinakar M Salunke; H M Gupta; R K Datta
Purification and partial characterization of an induced antibacterial protein in the silkworm, Bombyx mori.
Journal of invertebrate pathology 1995;65(1):17-24.
1994: V Raghunathan; S Khurana; V Gupta; Bhavana Shivu; Jayant B Udgaonkar; Dinakar M Salunke
Crystallization and molecular packing analysis of barstar crystals.
Journal of molecular biology 1994;243(3):533-6.
1994: N Grewal; GP Talwar; Dinakar M Salunke
Computer modelling of the interaction between human choriogonadotropin and its receptor.
Protein engineering 1994;7(2):205-11.
1993: N Grewal; Dinakar M Salunke
The antigenic domain of flagellin from S. paratyphi shares a structural fold with subtilisin.
FEBS letters 1993;322(2):111-4.
1993: H M Gupta; GP Talwar; Dinakar M Salunke
A novel computer modeling approach to the structures of small bioactive peptides: the structure of gonadotropin releasing hormone.
Proteins 1993;16(1):48-56.