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Chris Sander

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TOP 3
Jianjiong Gao; Benjamin Gross; Anders Jacobsen; Erik Larsson; Chris Sander; Bülent Arman Aksoy; Ethan Cerami; U Dogrusoz; Gideon Dresdner; Rileen Sinha; S Onur Sumer; Yichao Sun; Nikolaus Schultz
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Qianxing Mo; Adam B Olshen; R Scott Powers; Chris Sander; Nikolaus Schultz; Venkatraman E Seshan; Marc Ladanyi; Sijian Wang; Ronglai Shen
Pattern discovery and cancer gene identification in integrated cancer genomic data.
Giovanni Ciriello; Chris Sander; Bulent Arman Aksoy; Ethan Cerami; Nikolaus Schultz
Using MEMo to discover mutual exclusivity modules in cancer.

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All Publications

2013: Jianjiong Gao; Benjamin Gross; Anders Jacobsen; Erik Larsson; Chris Sander; Bülent Arman Aksoy; Ethan Cerami; U Dogrusoz; Gideon Dresdner; Rileen Sinha; S Onur Sumer; Yichao Sun; Nikolaus Schultz
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Science signaling 2013;6(269):pl1.
2013: Qianxing Mo; Adam B Olshen; R Scott Powers; Chris Sander; Nikolaus Schultz; Venkatraman E Seshan; Marc Ladanyi; Sijian Wang; Ronglai Shen
Pattern discovery and cancer gene identification in integrated cancer genomic data.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(11):4245-50.
2013: Giovanni Ciriello; Chris Sander; Bulent Arman Aksoy; Ethan Cerami; Nikolaus Schultz
Using MEMo to discover mutual exclusivity modules in cancer.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2013;Chapter 8():Unit 8.17.
2012: Debora S Marks; Thomas A Hopf; Chris Sander
Protein structure prediction from sequence variation.
Nature biotechnology 2012;30(11):1072-80.
2012: Gopa Iyer; Manickam Janakiraman; Matthew I Milowsky; Irina Ostrovnaya; Luke Peng; Mono Pirun; Chris Sander; Sasinya N Scott; Nicholas D Socci; Hikmat Al-Ahmadie; Dean F Bajorin; Michael F Berger; Bernard H Bochner; Timothy Chan; Aphrothiti J Hanrahan; Adriana Heguy; Barry S Taylor; Agnes Viale; David B Solit
Genome sequencing identifies a basis for everolimus sensitivity.
Science (New York, N.Y.) 2012;338(6104):221.
2012: Ethan Cerami; U Dogrusoz; Jianjiong Gao; Arthur P Goldberg; Benjamin E Gross; Michael L Heuer; Anders Jacobsen; Erik Larsson; Boris Reva; Chris Sander; Bülent Arman Aksoy; Yevgeniy Antipin; Caitlin J Byrne; Selcuk Onur Sumer; Nikolaus Schultz
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Cancer discovery 2012;2(5):401-4.
2012: Priyamvada Rajasethupathy; Chris Sander; Robert Sheridan; Thomas Tuschl; Igor Antonov; Sebastian Frey; Eric R Kandel
A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity.
Cell 2012;149(3):693-707.
2012: Giovanni Ciriello; Chris Sander; Ethan Cerami; Nikolaus Schultz
Mutual exclusivity analysis identifies oncogenic network modules.
Genome research 2012;22(2):398-406.
2012: Ronglai Shen; Nikolaus Schultz; Venkatraman E Seshan; Jason Huse; Marc Ladanyi; Qianxing Mo; Adam B Olshen; Chris Sander
Integrative subtype discovery in glioblastoma using iCluster.
PloS one 2012;7(4):e35236.
2012: Joachim Silber; Girish Harinath; Eric C Holland; Anders Jacobsen; Tatsuya Ozawa; Alicia Pedraza; Chris Sander; Jason Huse
miR-34a repression in proneural malignant gliomas upregulates expression of its target PDGFRA and promotes tumorigenesis.
PloS one 2012;7(3):e33844.
2012: Aphrothiti J Hanrahan; Adriana Heguy; Manickam Janikariman; Tari A King; Douglas A Levine; Narciso Olvera; Neal Rosen; Rita A Sakr; Chris Sander; Stefano Scarperi; Nikolaus Schultz; Qing-Bai She; David R Spriggs; Elisa de Stanchina; Ellen V Stevens; Barry S Taylor; Maggie L Westfal; Manickam Janakiraman; Carol Aghajanian; Dilip D Giri; David B Solit
Genomic complexity and AKT dependence in serous ovarian cancer.
Cancer discovery 2012;2(1):56-67.
2011: Faruck Morcos; José N Onuchic; Andrea Pagnani; Chris Sander; Arianna Bertolino; Terence Hwa; Bryan Lunt; Debora S Marks; Riccardo Zecchina; Martin Weigt
Direct-coupling analysis of residue coevolution captures native contacts across many protein families.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(49):E1293-301.
2011: Barry S Taylor; Agnes J Viale; Nicholas D Socci; Christina V Angeles; Cristina R Antonescu; Fabienne Brenet; Penelope DeCarolis; Chris Sander; Joseph Michael Scandura; Nikolaus Schultz; Samuel Singer
Frequent alterations and epigenetic silencing of differentiation pathway genes in structurally rearranged liposarcomas.
Cancer discovery 2011;1(7):587-97.
2011: Inna Lipchina; Aleksandra Mihailovic; Chris Sander; Robert Sheridan; Studer Lorenz; Thomas Tuschl; Yechiel Elkabetz; Markus Hafner; Doron Betel
Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response.
Genes & development 2011;25(20):2173-86.
2011: Romel Somwar; Paul J Tempst; Guangli Yang; Hakim Djaballah; Hediye Erdjument-Bromage; Erik Larsson; William W Lockwood; Ouathek Ouerfelli; Chris Sander; David Shum; Harold E Varmus
Superoxide dismutase 1 (SOD1) is a target for a small molecule identified in a screen for inhibitors of the growth of lung adenocarcinoma cell lines.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(39):16375-80.
2011: Boris Reva; Yevgeniy Antipin; Chris Sander
Predicting the functional impact of protein mutations: application to cancer genomics.
Nucleic acids research 2011;39(17):e118.
2011: Stacy Ugras; Agnes Viale; Nicholas D Socci; Barry S Taylor; Thomas Tuschl; Cristina R Antonescu; Elliott Brill; Aimee Crago; Penelope DeCarolis; Jeffrey M Gimble; Markus Hafner; Anders Jacobsen; Raya Khanin; Aleksandra Mihailovic; Rachael O'Connor; Chris Sander; Robert Sheridan; Samuel Singer
Small RNA sequencing and functional characterization reveals MicroRNA-143 tumor suppressor activity in liposarcoma.
Cancer research 2011;71(17):5659-69.
2011: Matthew Bott; Marie Brevet; Jenette Creaney; Robert Delsite; Tatsuo Ito; Richard A Lake; Adam Olshen; Simon Powell; Boris Reva; Valerie Rusch; Chris Sander; Ronglai Shen; Shigeki Shimizu; Barry S Taylor; Lu Wang; Maureen F Zakowski; Qin Zhou; Marc Ladanyi
The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma.
Nature genetics 2011;43(7):668-72.
2011: Rebecka Jörnsten; Tobias Abenius; Teresia Kling; Linnéa Schmidt; Erik Johansson; Torbjörn E M Nordling; Bodil Nordlander; Chris Sander; Peter Gennemark; Keiko Funa; Björn Nilsson; Linda Lindahl; Sven Nelander
Network modeling of the transcriptional effects of copy number aberrations in glioblastoma.
Molecular systems biology 2011;7():486.
2011: Parminder K Mankoo; Nikolaus Schultz; Ronglai Shen; Douglas A Levine; Chris Sander
Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles.
PloS one 2011;6(11):e24709.
2011: Nikolaus Schultz; Dina R Marenstein; Dino A De Angelis; Wei-Qing Wang; Sven Nelander; Anders Jacobsen; Debora S Marks; Joan Massagué; Chris Sander
Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-β pathway and reveal microRNA regulation of TGFBR2.
Silence 2011;2():3.
2011: Nicola J Clegg; Suzana S Couto; John Wongvipat; Haley Hieronymus; Brett S Carver; Barry S Taylor; Katharine Ellwood-Yen; William L Gerald; Chris Sander; Charles L Sawyers
MYC cooperates with AKT in prostate tumorigenesis and alters sensitivity to mTOR inhibitors.
PloS one 2011;6(3):e17449.
2011: Ethan G Cerami; Benjamin E Gross; Emek Demir; Igor Rodchenkov; Ozgün Babur; Nadia Anwar; Nikolaus Schultz; Gary D Bader; Chris Sander
Pathway Commons, a web resource for biological pathway data.
Nucleic acids research 2011;39(Database issue):D685-90.
2010: Erik Larsson; Chris Sander; Debora Marks
mRNA turnover rate limits siRNA and microRNA efficacy.
Molecular systems biology 2010;6():433.
2010: Emek Demir; Michael P Cary; Suzanne Paley; Ken Fukuda; Christian Lemer; Imre Vastrik; Guanming Wu; Peter D'Eustachio; Carl Schaefer; Joanne Luciano; Frank Schacherer; Irma Martinez-Flores; Zhenjun Hu; Veronica Jimenez-Jacinto; Geeta Joshi-Tope; Richard Kumaran Kandasamy; Alejandra C Lopez-Fuentes; Huaiyu Mi; Elgar Pichler; Igor Rodchenkov; Andrea Splendiani; Sasha Tkachev; Jeremy Zucker; Gopal Gopinath; Harsha Rajasimha; Ranjani Ramakrishnan; Imran Shah; Mustafa Syed; Nadia Anwar; Ozgün Babur; Michael Blinov; Erik Brauner; Dan Corwin; Sylva Donaldson; Frank Gibbons; Robert Goldberg; Peter Hornbeck; Augustin Luna; Peter Murray-Rust; Eric Neumann; Oliver Reubenacker; Matthias Samwald; Martijn van Iersel; Sarala Wimalaratne; Keith Allen; Burk Braun; Michelle Whirl-Carrillo; Kei-Hoi Cheung; Kam Dahlquist; Andrew Finney; Marc Gillespie; Elizabeth Glass; Li Gong; Robin Haw; Michael Honig; Olivier Hubaut; David Kane; Shiva Krupa; Martina Kutmon; Julie Leonard; Debbie Marks; David Merberg; Victoria Petri; Alex Pico; Dean Ravenscroft; Liya Ren; Nigam Shah; Margot Sunshine; Rebecca Tang; Ryan Whaley; Stan Letovksy; Kenneth H Buetow; Andrey Rzhetsky; Vincent Schachter; Bruno S Sobral; Ugur Dogrusoz; Shannon McWeeney; Mirit Aladjem; Ewan Birney; Julio Collado-Vides; Susumu Goto; Michael Hucka; Nicolas Le Novère; Natalia Maltsev; Akhilesh Pandey; Paul Thomas; Edgar Wingender; Peter D Karp; Chris Sander; Oliver Ruebenacker; Gary D Bader
The BioPAX community standard for pathway data sharing.
Nature biotechnology 2010;28(9):935-42.
2010: Elliott Brill; Ryan Gobble; Christina Angeles; Mariana Lagos-Quintana; Aimee Crago; Bernadette Laxa; Penelope DeCarolis; Lei Zhang; Cristina R Antonescu; Nicholas D Socci; Barry S Taylor; Chris Sander; Andrew Koff; Samuel Singer
ZIC1 overexpression is oncogenic in liposarcoma.
Cancer research 2010;70(17):6891-901.
2010: Ozgün Babur; Emek Demir; Mithat Gonen; Chris Sander; U Dogrusoz
Discovering modulators of gene expression.
Nucleic acids research 2010;38(17):5648-56.
2010: Jordi Barretina; Barry S Taylor; Shantanu Banerji; Alexis H Ramos; Mariana Lagos-Quintana; Penelope L Decarolis; Kinjal Shah; Nicholas D Socci; Barbara A Weir; Alan Ho; Derek Y Chiang; Boris Reva; Craig H Mermel; Gad Getz; Yevgenyi Antipin; Rameen Beroukhim; John E Major; Charles Hatton; Richard Nicoletti; Megan Hanna; Ted Sharpe; Tim J Fennell; Kristian Cibulskis; Robert C Onofrio; Tsuyoshi Saito; Neerav Shukla; Christopher Lau; Sven Nelander; Serena J Silver; Carrie Sougnez; Agnes Viale; Wendy Winckler; ROBERT G MAKI; Levi A Garraway; Alex E Lash; Heidi Greulich; David E Root; William R Sellers; Gary K Schwartz; Cristina R Antonescu; Eric S Lander; Harold E Varmus; Marc Ladanyi; Chris Sander; Matthew Meyerson; Samuel Singer
Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.
Nature genetics 2010;42(8):715-21.
2010: Barry S Taylor; Nikolaus Schultz; Haley Hieronymus; Anuradha Gopalan; Yonghong Xiao; Brett S Carver; Vivek K Arora; Poorvi Kaushik; Ethan Cerami; Boris Reva; Yevgeniy Antipin; Nicholas Mitsiades; Thomas Landers; Igor Dolgalev; John E Major; Manda Wilson; Nicholas D Socci; Alex E Lash; Adriana Heguy; James A Eastham; Howard I Scher; Victor E Reuter; Peter T Scardino; Chris Sander; Charles L Sawyers; William L Gerald
Integrative genomic profiling of human prostate cancer.
Cancer cell 2010;18(1):11-22.
2010: Aaron Arvey; Erik Larsson; Chris Sander; Christina Leslie; Debora S Marks
Target mRNA abundance dilutes microRNA and siRNA activity.
Molecular systems biology 2010;6():363.
2010: Thomas J Hudson; Warwick Anderson; Axel Artez; Anna D Barker; Cindy Bell; Rosa R Bernabé; M K Bhan; Fabien Calvo; Iiro Eerola; Daniela S Gerhard; Alan Guttmacher; Mark Guyer; Fiona M Hemsley; Jennifer L Jennings; David Kerr; Peter Klatt; Patrik Kolar; Jun Kusada; David P Lane; Frank Laplace; Lu Youyong; Gerd Nettekoven; Brad Ozenberger; Jane Peterson; T S Rao; Jacques Remacle; Alan J Schafer; Tatsuhiro Shibata; Michael R Stratton; Joseph G Vockley; Koichi Watanabe; Huanming Yang; Matthew M F Yuen; Bartha M Knoppers; Martin Bobrow; Anne Cambon-Thomsen; Lynn G Dressler; Stephanie O M Dyke; Yann Joly; Kazuto Kato; Karen L Kennedy; Pilar Nicolás; Michael J Parker; Emmanuelle Rial-Sebbag; Carlos M Romeo-Casabona; Kenna M Shaw; Susan Wallace; Georgia L Wiesner; Nikolajs Zeps; Peter Lichter; Andrew V Biankin; Christian Chabannon; Lynda Chin; Bruno Clément; Enrique de Alava; Françoise Degos; Martin L Ferguson; Peter Geary; D Neil Hayes; Thomas J Hudson; Amber L Johns; Arek Kasprzyk; Hidewaki Nakagawa; Robert J Penny; Miguel A Piris; Rajiv Sarin; Aldo Scarpa; Tatsuhiro Shibata; Marc van de Vijver; P Andrew Futreal; Hiroyuki Aburatani; Mónica Bayés; David D L Botwell; Peter J Campbell; Xavier Estivill; Daniela S Gerhard; Sean M Grimmond; Ivo Gut; Martin Hirst; Carlos López-Otín; Partha Majumder; Marco Marra; John D McPherson; Hidewaki Nakagawa; Zemin Ning; Xose S Puente; Yijun Ruan; Tatsuhiro Shibata; Michael R Stratton; Hendrik G Stunnenberg; Harold Swerdlow; Victor E Velculescu; Richard K Wilson; Hong H Xue; Liu Yang; Paul Spellman; Gary D Bader; Paul C Boutros; Peter J Campbell; Paul Flicek; Gad Getz; Roderic Guigó; Guangwu Guo; David Haussler; Simon Heath; Tim J Hubbard; Tao Jiang; Steven M Jones; Qibin Li; Nuria López-Bigas; Ruibang Luo; Lakshmi Muthuswamy; B F Francis Ouellette; John Pearson; Xose S Puente; Victor Quesada; Benjamin J Raphael; Chris Sander; Tatsuhiro Shibata; Terence P Speed; Lincoln D Stein; Joshua M Stuart; Jon W Teague; Yasushi Totoki; Tatsuhiko Tsunoda; Alfonso Valencia; David A Wheeler; Honglong Wu; Shancen Zhao; Guangyu Zhou; Lincoln D Stein; Roderic Guigó; Tim J Hubbard; Yann Joly; Steven M Jones; Arek Kasprzyk; Mark Lathrop; Nuria López-Bigas; B F Francis Ouellette; Paul T Spellman; Jon W Teague; Gilles Thomas; Alfonso Valencia; Teruhiko Yoshida; Karen L Kennedy; Myles Axton; Stephanie O M Dyke; P Andrew Futreal; Daniela S Gerhard; Chris Gunter; Mark Guyer; Thomas J Hudson; John D McPherson; Linda J Miller; Brad Ozenberger; Kenna M Shaw; Arek Kasprzyk; Lincoln D Stein; Junjun Zhang; Syed A Haider; Jianxin Wang; Christina K Yung; Anthony Cross; Yong Liang; Saravanamuttu Gnaneshan; Jonathan Guberman; Jack Hsu; Martin Bobrow; Don R C Chalmers; Karl W Hasel; Yann Joly; Terry S H Kaan; Karen L Kennedy; Bartha M Knoppers; William W Lowrance; Tohru Masui; Pilar Nicolás; Emmanuelle Rial-Sebbag; Laura Lyman Rodriguez; Catherine Vergely; Teruhiko Yoshida; Sean M Grimmond; Andrew V Biankin; David D L Bowtell; Nicole Cloonan; Anna deFazio; James R Eshleman; Dariush Etemadmoghadam; Brooke A Gardiner; James G Kench; Aldo Scarpa; Robert L Sutherland; Margaret A Tempero; Nicola J Waddell; Peter J Wilson; John D McPherson; Steve Gallinger; Ming-Sound Tsao; Patricia A Shaw; Gloria M Petersen; Debabrata Mukhopadhyay; Lynda Chin; Ronald A DePinho; Sarah Thayer; Lakshmi Muthuswamy; Kamran Shazand; Timothy Beck; Michelle Sam; Lee Timms; Vanessa Ballin; Youyong Lu; Jiafu Ji; Xiuqing Zhang; Feng Chen; Xueda Hu; Guangyu Zhou; Qi Yang; Geng Tian; Lianhai Zhang; Xiaofang Xing; Xianghong Li; Zhenggang Zhu; Yingyan Yu; Jun Yu; Huanming Yang; Mark Lathrop; Jörg Tost; Paul Brennan; Ivana Holcatova; David Zaridze; Alvis Brazma; Lars Egevard; Egor Prokhortchouk; Rosamonde Elizabeth Banks; Mathias Uhlén; Anne Cambon-Thomsen; Juris Viksna; Fredrik Ponten; Konstantin Skryabin; Michael R Stratton; P Andrew Futreal; Ewan Birney; Ake Borg; Anne-Lise Børresen-Dale; Carlos Caldas; John A Foekens; Sancha Martin; Jorge S Reis-Filho; Andrea L Richardson; C Sotiriou; Hendrik G Stunnenberg; Giles Thoms; Marc van de Vijver; Laura van't Veer; Fabien Calvo; Daniel Birnbaum; Hélène Blanche; Pascal Boucher; Sandrine Boyault; Christian Chabannon; Ivo Gut; Jocelyne D Masson-Jacquemier; Mark Lathrop; Iris Pauporté; Xavier Pivot; Anne Vincent-Salomon; Eric Tabone; Charles Theillet; Gilles Thomas; Jörg Tost; Isabelle Treilleux; Fabien Calvo; Paulette Bioulac-Sage; Bruno Clément; Thomas Decaens; Françoise Degos; Dominique Franco; Ivo Gut; Marta Gut; Simon Heath; Mark Lathrop; Didier Samuel; Gilles Thomas; Jessica Zucman-Rossi; Peter Lichter; Roland Eils; Benedikt Brors; Jan O Korbel; Andrey Korshunov; Pablo Landgraf; Hans Lehrach; Stefan Pfister; Bernhard Radlwimmer; Guido Reifenberger; Michael D Taylor; Christof von Kalle; Partha P Majumder; Rajiv Sarin; T S Rao; M K Bhan; Aldo Scarpa; Paolo Pederzoli; Rita A Lawlor; Massimo Delledonne; Alberto Bardelli; Andrew V Biankin; Sean M Grimmond; Thomas Gress; David S Klimstra; Giuseppe Zamboni; Tatsuhiro Shibata; Yusuke Nakamura; Hidewaki Nakagawa; Jun Kusada; Tatsuhiko Tsunoda; Satoru Miyano; Hiroyuki Aburatani; Kazuto Kato; Akihiro Fujimoto; Teruhiko Yoshida; Elias Campo; Carlos López-Otín; Xavier Estivill; Roderic Guigó; Silvia de Sanjosé; Miguel A Piris; Emili Montserrat; Marcos González-Díaz; Xose S Puente; Pedro Jares; Alfonso Valencia; Heinz Himmelbaue; Victor Quesada; Silvia Bea; Michael R Stratton; P Andrew Futreal; Peter J Campbell; Anne Vincent-Salomon; Andrea L Richardson; Jorge S Reis-Filho; Marc van de Vijver; Gilles Thomas; Jocelyne D Masson-Jacquemier; Samuel Aparicio; Ake Borg; Anne-Lise Børresen-Dale; Carlos Caldas; John A Foekens; Hendrik G Stunnenberg; Laura van't Veer; Douglas F Easton; Paul T Spellman; Sancha Martin; Anna D Barker; Lynda Chin; Francis S Collins; Carolyn Corlies Compton; Martin L Ferguson; Daniela S Gerhard; Gad Getz; Chris Gunter; Alan Guttmacher; Mark Guyer; D Neil Hayes; Eric S Lander; Brad Ozenberger; Robert Penny; Jane Peterson; Chris Sander; Kenna M Shaw; Terence P Speed; Paul T Spellman; Joseph G Vockley; David A Wheeler; Richard K Wilson; Thomas J Hudson; Lynda Chin; Bartha M Knoppers; Eric S Lander; Peter Lichter; Lincoln D Stein; Michael R Stratton; Warwick Anderson; Anna D Barker; Cindy Bell; Martin Bobrow; Wylie Burke; Francis S Collins; Carolyn C Compton; Ronald A DePinho; Douglas F Easton; P Andrew Futreal; Daniela S Gerhard; Anthony R Green; Mark Guyer; Stanley R Hamilton; Tim J Hubbard; Olli P Kallioniemi; Karen L Kennedy; Timothy J Ley; Edison T Liu; Youyong Lu; Partha Majumder; Marco Marra; Brad Ozenberger; Jane Peterson; Alan J Schafer; Paul T Spellman; Hendrik G Stunnenberg; Brandon J Wainwright; Richard K Wilson; Anthony Cros; Brooke B Gardiner; Heinz Himmelbauer; Huanming Yang
International network of cancer genome projects.
Nature 2010;464(7291):993-8.
2010: Joao Xavier; Chris Sander
Principle of system balance for drug interactions.
The New England journal of medicine 2010;362(14):1339-40.
2010: Ozgun Babur; U Dogrusoz; Emek Demir; Chris Sander
ChiBE: interactive visualization and manipulation of BioPAX pathway models.
Bioinformatics (Oxford, England) 2010;26(3):429-31.
2010: Doron Betel; Anjali Koppal; Phaedra Agius; Chris Sander; Christina Leslie
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites.
Genome biology 2010;11(8):R90.
2010: Ethan Cerami; Emek Demir; Nikolaus Schultz; Barry S Taylor; Chris Sander
Automated network analysis identifies core pathways in glioblastoma.
PloS one 2010;5(2):e8918.
2010: Richard Kumaran Kandasamy; S Sujatha Mohan; Rajesh Raju; Shivakumar Keerthikumar; Ghantasala S Sameer Kumar; Abhilash K Venugopal; Deepthi Telikicherla; J Daniel Navarro; M Suresh; Christian Pecquet; Sashi Kanth Gollapudi; Sudhir Gopal Tattikota; Shyam Mohan; Hariprasad Padhukasahasram; Yashwanth Subbannayya; renu goel; Harrys K C Jacob; Jun Zhong; Raja Sekhar; Vishalakshi Nanjappa; Lavanya Balakrishnan; Roopashree Subbaiah; Y L Ramachandra; B Abdul Rahiman; T S Keshava Prasad; Jian-Xin Lin; Jon C D Houtman; Stephen Desiderio; Jean-Christophe Renauld; Stefan N Constantinescu; Osamu Ohara; Toshio Hirano; Masato Kubo; Sujay Singh; Purvesh Khatri; Sorin Draghici; Gary D Bader; Chris Sander; Warren J Leonard; Akhilesh Pandey
NetPath: a public resource of curated signal transduction pathways.
Genome biology 2010;11(1):R3.
2010: Selvaraju Veeriah; Barry S Taylor; Shasha Meng; Fang Fang; Emrullah Yilmaz; Igor Vivanco; Manickam Janakiraman; Nikolaus Schultz; Aphrothiti J Hanrahan; William Pao; Marc Ladanyi; Chris Sander; Adriana Heguy; Eric C Holland; Philip B Paty; Paul Mischel; Linda Liau; Timothy F Cloughesy; Ingo K Mellinghoff; David B Solit; Timothy Chan
Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies.
Nature genetics 2010;42(1):77-82.
2009: Ping Mu; Yoon-Chi Han; Doron Betel; Evelyn Yao; Massimo Squatrito; Paul Ogrodowski; Elisa de Stanchina; Aleco D'Andrea; Chris Sander; Andrea Ventura
Genetic dissection of the miR-17~92 cluster of microRNAs in Myc-induced B-cell lymphomas.
Genes & development 2009;23(24):2806-11.
2009: Priyamvada Rajasethupathy; Ferdinando Fiumara; Robert Sheridan; Doron Betel; Sathyanarayanan V Puthanveettil; James J Russo; Chris Sander; Thomas Tuschl; Eric R Kandel
Characterization of small RNAs in Aplysia reveals a role for miR-124 in constraining synaptic plasticity through CREB.
Neuron 2009;63(6):803-17.
2009: Dhananjay A Chitale; Yixuan Gong; B S Taylor; S Broderick; Cameron Brennan; Romel Somwar; B Golas; Liang Wang; N Motoi; J Szoke; J M Reinersman; J Major; Chris Sander; Venkatraman E Seshan; Maureen F Zakowski; Valerie W Rusch; William Pao; William Gerald; Marc Ladanyi
An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors.
Oncogene 2009;28(31):2773-83.
2009: Nicolas Le Novère; Michael Hucka; Huaiyu Mi; Stuart Moodie; Falk Schreiber; Anatoly Sorokin; Emek Demir; Katja Wegner; Mirit I Aladjem; Sarala M Wimalaratne; Frank T Bergman; Ralph Gauges; Peter Ghazal; Hideya Kawaji; Lu Li; Yukiko Matsuoka; Alice Villéger; Sarah E Boyd; Laurence Calzone; Melanie Courtot; Ugur Dogrusoz; Tom C Freeman; Akira Funahashi; Samik Ghosh; Akiya Jouraku; Sohyoung Kim; Fedor Kolpakov; Augustin Luna; Sven Sahle; Esther Schmidt; Steven Watterson; Guanming Wu; Igor Goryanin; Douglas B Kell; Chris Sander; Herbert Sauro; Jacky L Snoep; Kurt Kohn; Hiroaki Kitano
The Systems Biology Graphical Notation.
Nature biotechnology 2009;27(8):735-41.
2009: Selvaraju Veeriah; Cameron Brennan; Shasha Meng; Bhuvanesh Singh; James A Fagin; David B Solit; Philip B Paty; Dan Rohle; Igor Vivanco; Juliann Chmielecki; William Pao; Marc Ladanyi; William L Gerald; Linda Liau; Timothy C Cloughesy; Paul Mischel; Chris Sander; Barry Taylor; Nikolaus Schultz; John Major; Adriana Heguy; Fang Fang; Ingo K Mellinghoff; Timothy Chan
The tyrosine phosphatase PTPRD is a tumor suppressor that is frequently inactivated and mutated in glioblastoma and other human cancers.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(23):9435-40.
2009: Aly A Khan; Doron Betel; Martin L Miller; Chris Sander; Christina Leslie; Debora S Marks
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs.
Nature biotechnology 2009;27(6):549-55.
2009: Jennifer King; Jin Xu; John Wongvipat; Haley Hieronymus; Brett S Carver; David H Leung; Barry S Taylor; Chris Sander; Robert Cardiff; Suzana S Couto; William L Gerald; Charles L Sawyers
Cooperativity of TMPRSS2-ERG with PI3-kinase pathway activation in prostate oncogenesis.
Nature genetics 2009;41(5):524-6.
2009: Christine A Pratilas; Barry S Taylor; Qing Ye; Agnes Viale; Chris Sander; David B Solit; Neal Rosen
(V600E)BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(11):4519-24.
2009: Ruedi Aebersold; Charles Auffray; Erin Baney; Emmanuel Barillot; Alvis Brazma; Catherine Brett; Søren Brunak; Atul Butte; Andrea Califano; Julio Celis; Tanja Cufer; James Ferrell; David Galas; Daniel Gallahan; Robert Gatenby; Albert Goldbeter; Natasa Hace; Adriano Henney; Lee Hood; Ravi Iyengar; Vicky Jackson; Olli Kallioniemi; Ursula Klingmüller; Patrik Kolar; Walter Kolch; Christina Kyriakopoulou; Frank Laplace; Hans Lehrach; Frederick Marcus; Lynn Matrisian; Garry Nolan; Lucas Pelkmans; Anil Potti; Chris Sander; Marija Seljak; Dinah Singer; Peter Sorger; Hendrik Stunnenberg; Giulio Superti-Furga; Mathias Uhlen; Marc Vidal; John Weinstein; Dennis Wigle; Michael Williams; Olaf Wolkenhauer; Boris Zhivotovsky; Andrei Zinovyev; Blaz Zupan
Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).
Molecular oncology 2009;3(1):9-17.
2009: Rui Yi; H Amalia Pasolli; Markus Landthaler; Markus Hafner; Tolulope Ojo; Robert Sheridan; Chris Sander; Dónal O'Carroll; Markus Stoffel; Thomas Tuschl; Elaine Fuchs
DGCR8-dependent microRNA biogenesis is essential for skin development.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(2):498-502.
2008: Raffi Tonikian; Yingnan Zhang; Stephen L Sazinsky; Bridget Currell; Jung-Hua Yeh; Boris Reva; Heike A Held; Brent A Appleton; Marie Evangelista; Yan Wu; Xiaofeng Xin; Andrew C Chan; Somasekar Seshagiri; Laurence A Lasky; Chris Sander; Charles Boone; Gary D Bader; Sachdev S Sidhu
A specificity map for the PDZ domain family.
PLoS biology 2008;6(9):e239.
2008: Florian Leitner; Martin Krallinger; Carlos Rodriguez-Penagos; Joerg Hakenberg; Conrad Plake; Cheng-Ju Kuo; Chun-Nan Hsu; Richard Tzong-Han Tsai; Hsi-Chuan Hung; William W Lau; Calvin A Johnson; Rune Saetre; Kazuhiro Yoshida; Yan Hua Chen; Sun Kim; Soo-Yong Shin; Byoung-Tak Zhang; William A Baumgartner; Lawrence Hunter; Barry Haddow; Michael Matthews; Xinglong Wang; Patrick Ruch; Frederic Ehrler; Arzucan Ozgür; Güneş Erkan; Dragomir R Radev; Michael Krauthammer; ThaiBinh Luong; Robert Hoffmann; Chris Sander; Alfonso Valencia
Introducing meta-services for biomedical information extraction.
Genome biology 2008;9 Suppl 2():S6.
2008: Barry S Taylor; Jordi Barretina; Nicholas D Socci; Penelope DeCarolis; Marc Ladanyi; Matthew Meyerson; Samuel Singer; Chris Sander
Functional copy-number alterations in cancer.
PloS one 2008;3(9):e3179.
2008: Sven Nelander; Weiqing Wang; Björn Nilsson; Qing-Bai She; Christine A Pratilas; Neal Rosen; Peter Gennemark; Chris Sander
Models from experiments: combinatorial drug perturbations of cancer cells.
Molecular systems biology 2008;4():216.
2008: Ramon Aragues; Chris Sander; baldomero oliva
Predicting cancer involvement of genes from heterogeneous data.
BMC bioinformatics 2008;9():172.
2008: Doron Betel; Manda Wilson; Aaron Gabow; Debora S Marks; Chris Sander
The microRNA.org resource: targets and expression.
Nucleic acids research 2008;36(Database issue):D149-53.
2007: Doron Betel; Robert Sheridan; Debora S Marks; Chris Sander
Computational analysis of mouse piRNA sequence and biogenesis.
PLoS computational biology 2007;3(11):e222.
2007: Glenn Randall; Maryline Panis; Jacob D Cooper; Timothy L Tellinghuisen; Karen E Sukhodolets; Sébastien Pfeffer; Markus Landthaler; Pablo Landgraf; Sherry Kan; Brett D Lindenbach; Minchen Chien; David B Weir; James J Russo; Jingyue Ju; Michael J Brownstein; Robert Sheridan; Chris Sander; Mihaela Zavolan; Thomas Tuschl; Charles M Rice
Cellular cofactors affecting hepatitis C virus infection and replication.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12884-9.
2007: Samuel Singer; Nicholas D Socci; Grazia Ambrosini; Elliot B Sambol; Penelope DeCarolis; Yuhsin Wu; Rachael O'Connor; ROBERT G MAKI; Agnes Viale; Chris Sander; Gary K Schwartz; Cristina R Antonescu
Gene expression profiling of liposarcoma identifies distinct biological types/subtypes and potential therapeutic targets in well-differentiated and dedifferentiated liposarcoma.
Cancer research 2007;67(14):6626-36.
2007: Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklós Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
A mammalian microRNA expression atlas based on small RNA library sequencing.
Cell 2007;129(7):1401-14.
2007: Valerio Fulci; Sabina Chiaretti; Marina Goldoni; Gianluca Azzalin; Nicoletta Carucci; Simona Tavolaro; Leandro Castellano; Armando Magrelli; Franca Citarella; Monica Messina; Roberta Maggio; Nadia Peragine; Simona Santangelo; Francesca Romana Mauro; Pablo Landgraf; Thomas Tuschl; David B Weir; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Chris Sander; Mihaela Zavolan; Anna Guarini; Robin Foà; Giuseppe Macino
Quantitative technologies establish a novel microRNA profile of chronic lymphocytic leukemia.
Blood 2007;109(11):4944-51.
2007: Jomol P Mathew; Barry S Taylor; Gary Bader; Saiju Pyarajan; Marco Antoniotti; Arul M Chinnaiyan; Chris Sander; Steven J Burakoff; Bud Mishra
From bytes to bedside: data integration and computational biology for translational cancer research.
PLoS computational biology 2007;3(2):e12.
2007: Boris Reva; Yevgeniy Antipin; Chris Sander
Determinants of protein function revealed by combinatorial entropy optimization.
Genome biology 2007;8(11):R232.
2007: Melissa S Cline; Michael Smoot; Ethan Cerami; Kuchinsky Allan; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary Bader
Integration of biological networks and gene expression data using Cytoscape.
Nature protocols 2007;2(10):2366-82.
2007: Javier Cotignola; Boris Reva; Nandita Mitra; Nicole Ishill; Shaokun Chuai; Ami Patel; Shivang Shah; Gretchen Vanderbeek; Daniel G Coit; Klaus J Busam; Allan C Halpern; Alan N Houghton; Chris Sander; Marianne Berwick; Irene Orlow
Matrix Metalloproteinase-9 (MMP-9) polymorphisms in patients with cutaneous malignant melanoma.
BMC medical genetics 2007;8():10.
2007: Maureen E Higgins; Martine Claremont; John E Major; Chris Sander; Alex E Lash
CancerGenes: a gene selection resource for cancer genome projects.
Nucleic acids research 2007;35(Database issue):D721-6.
2006: Alexei A Aravin; Dimos Gaidatzis; Sébastien Pfeffer; Mariana Lagos-Quintana; Pablo Landgraf; Nicola Iovino; Patricia Morris; Michael J Brownstein; Satomi Kuramochi-Miyagawa; Toru Nakano; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Chris Sander; Mihaela Zavolan; Thomas Tuschl
A novel class of small RNAs bind to MILI protein in mouse testes.
Nature 2006;442(7099):203-7.
2006: Ethan G Cerami; Gary Bader; Benjamin E Gross; Chris Sander
cPath: open source software for collecting, storing, and querying biological pathways.
BMC bioinformatics 2006;7():497.
2006: Bino John; Chris Sander; Debora S Marks
Prediction of human microRNA targets.
Methods in molecular biology (Clifton, N.J.) 2006;342():101-13.
2006: Jose M G Vilar; Ronald Jansen; Chris Sander
Signal processing in the TGF-beta superfamily ligand-receptor network.
PLoS computational biology 2006;2(1):e3.
2006: Gary Bader; Michael P Cary; Chris Sander
Pathguide: a pathway resource list.
Nucleic acids research 2006;34(Database issue):D504-6.
2005: Dan Leaman; Po Yu Chen; John Fak; Abdullah Yalcin; Michael Pearce; Ulrich Unnerstall; Debora S Marks; Chris Sander; Thomas Tuschl; Ulrike Gaul
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development.
Cell 2005;121(7):1097-108.
2005: Po Yu Chen; Heiko Manninga; Krasimir Slanchev; Minchen Chien; James J Russo; Jingyue Ju; Robert Sheridan; Bino John; Debora S Marks; Dimos Gaidatzis; Chris Sander; Mihaela Zavolan; Thomas Tuschl
The developmental miRNA profiles of zebrafish as determined by small RNA cloning.
Genes & development 2005;19(11):1288-93.
2005: Sébastien Pfeffer; Alain Sewer; Mariana Lagos-Quintana; Robert Sheridan; Chris Sander; Friedrich A Grässer; Linda F van Dyk; Kiong Ho; Stewart Shuman; Minchen Chien; James J Russo; Jingyue Ju; Glenn Randall; Brett D Lindenbach; Charles M Rice; Viviana Simon; David D Ho; Mihaela Zavolan; Thomas Tuschl
Identification of microRNAs of the herpesvirus family.
Nature methods 2005;2(4):269-76.
2005: Michael P Cary; Gary Bader; Chris Sander
Pathway information for systems biology.
FEBS letters 2005;579(8):1815-20.
2005: Silvia Monticelli; K Mark Ansel; Changchun Xiao; Nicholas D Socci; Anna M Krichevsky; To-Ha Thai; Nikolaus Rajewsky; Debora S Marks; Chris Sander; Klaus Rajewsky; Anjana Rao; Kenneth S Kosik
MicroRNA profiling of the murine hematopoietic system.
Genome biology 2005;6(8):R71.
2004: Bino John; Anton J Enright; Alexei A Aravin; Thomas Tuschl; Chris Sander; Debora S Marks
Human MicroRNA targets.
PLoS biology 2004;2(11):e363.
2004: Joel Pradines; Laura Rudolph-Owen; John Hunter; Patrick Leroy; Michael Cary; Robert Coopersmith; Vlado Dancik; Yelena Eltsefon; Victor Farutin; Christophe Leroy; Jonathan Rees; David Rose; Steve Rowley; Alan Ruttenberg; Patrick Wieghardt; Chris Sander; Christian Reich
Detection of activity centers in cellular pathways using transcript profiling.
Journal of biopharmaceutical statistics 2004;14(3):701-21.
2004: Jinhong Chang; Emmanuelle Nicolas; Debora Marks; Chris Sander; Anthony Lerro; Marie Annick Buendia; Chunxiao Xu; William S Mason; Thomas D Moloshok; Roque Bort; Kenneth S Zaret; John M Taylor
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1.
RNA biology 2004;1(2):106-13.
2004: Sébastien Pfeffer; Mihaela Zavolan; Friedrich A Grässer; Minchen Chien; James J Russo; Jingyue Ju; Bino John; Anton J Enright; Debora Marks; Chris Sander; Thomas Tuschl
Identification of virus-encoded microRNAs.
Science (New York, N.Y.) 2004;304(5671):734-6.
2004: Amy Hin Yan Tong; Guillaume Lesage; Gary Bader; Huiming Ding; Hong Xu; Xiaofeng Xin; James Young; Gabriel F Berriz; Renee L Brost; Michael Chang; YiQun Chen; Xin Cheng; Gordon Chua; Helena Friesen; Debra S Goldberg; Jennifer Haynes; Christine Humphries; Grace He; Shamiza Hussein; Lizhu Ke; Nevan Krogan; Zhijian Li; Joshua N Levinson; Hong Lu; Patrice Ménard; Christella Munyana; Ainslie B Parsons; Owen Ryan; Raffi Tonikian; Tania Roberts; Anne-Marie Sdicu; Jesse Shapiro; Bilal Sheikh; Bernhard Suter; Sharyl L Wong; Lan V Zhang; Hongwei Zhu; Christopher G Burd; Sean Munro; Chris Sander; Jasper Rine; Jack Greenblatt; Matthias Peter; Anthony Bretscher; Graham Bell; Frederick P Roth; Grant W Brown; Brenda Andrews; Howard Bussey; Charles Boone
Global mapping of the yeast genetic interaction network.
Science (New York, N.Y.) 2004;303(5659):808-13.
2004: Henning Hermjakob; Luisa Montecchi-Palazzi; Gary Bader; Jérôme Wojcik; Lukasz Salwinski; Arnaud CEOL; Susan Moore; Sandra Orchard; Ugis Sarkans; Christian von Mering; Bernd Roechert; Sylvain Poux; Eva Jung; Henning Mersch; Paul Kersey; Michael Lappe; Yixue Li; Rong Zeng; Debashis Rana; Macha Nikolski; Holger Husi; Christine Brun; K Shanker; Seth G N Grant; Chris Sander; Peer Bork; Weimin Zhu; Akhilesh Pandey; Alvis Brazma; Bernard Jacq; Marc Vidal; David Sherman; Pierre Legrain; Gianni Cesareni; Ioannis Xenarios; David Eisenberg; Boris Steipe; Chris Hogue; Rolf Apweiler
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Nature biotechnology 2004;22(2):177-83.
2003: Gabriel F Berriz; Oliver D King; Bryant Barbara; Chris Sander; Frederick P Roth
Characterizing gene sets with FuncAssociate.
Bioinformatics (Oxford, England) 2003;19(18):2502-4.
2003: Ioannis Iliopoulos; Sophia Tsoka; Miguel Andrade; Anton J Enright; Mark Carroll; Patrick Poullet; Vassilis Promponas; Theodore D Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J Hamodrakas; Javier Tamames; Asutosh T Yagnik; Anna Tramontano; Damien Devos; christian blaschke; Carmen Galvez; David Brett; David Martin; Christophe Leroy; Isidore Rigoutsos; Chris Sander; Christos Ouzounis
Evaluation of annotation strategies using an entire genome sequence.
Bioinformatics (Oxford, England) 2003;19(6):717-26.
2003: Anton J Enright; Bino John; Ulrike Gaul; Thomas Tuschl; Chris Sander; Debora S Marks
MicroRNA targets in Drosophila.
Genome biology 2003;5(1):R1.
2003: Dennis Vitkup; Chris Sander; George M Church
The amino-acid mutational spectrum of human genetic disease.
Genome biology 2003;4(11):R72.
2001: H P Kresse; M Czubayko; G Nyakatura; G Vriend; Chris Sander; H Bloecker
Four-helix bundle topology re-engineered: monomeric Rop protein variants with different loop arrangements.
Protein engineering 2001;14(11):897-901.
2001: Dennis Vitkup; Eugene Melamud; John Moult; Chris Sander
Completeness in structural genomics.
Nature structural biology 2001;8(6):559-66.
2001: Ioannis Iliopoulos; Sophia Tsoka; Miguel Andrade; Paul Janssen; Benjamin Audit; A Tramontano; Carmen Galvez; Christophe Leroy; Chris Sander; Christos Ouzounis
Genome sequences and great expectations.
Genome biology 2001;2(1):INTERACTIONS0001.
2000: Vassilis Promponas; Anton J Enright; Sophia Tsoka; David P Kreil; Christophe Leroy; Stavros J Hamodrakas; Chris Sander; Christos Ouzounis
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
Bioinformatics (Oxford, England) 2000;16(10):915-22.
2000: Burkhard Rost; Chris Sander
Third generation prediction of secondary structures.
Methods in molecular biology (Clifton, N.J.) 2000;143():71-95.
2000: Sebastian Hoersch; Christophe Leroy; NP Brown; Miguel Andrade; Chris Sander
The GeneQuiz web server: protein functional analysis through the Web.
Trends in biochemical sciences 2000;25(1):33-5.
1999: Miguel Andrade; Christos Ouzounis; Chris Sander; Javier Tamames; Carmen Galvez
Functional classes in the three domains of life.
Journal of molecular evolution 1999;49(5):551-7.
1999: Miguel Andrade; NP Brown; Christophe Leroy; Sebastian Hoersch; A de Daruvar; C Reich; A Franchini; Javier Tamames; Carmen Galvez; Christos Ouzounis; Chris Sander
Automated genome sequence analysis and annotation.
Bioinformatics (Oxford, England) 1999;15(5):391-412.
1999: L Holm; Chris Sander
Protein folds and families: sequence and structure alignments.
Nucleic acids research 1999;27(1):244-7.
1998: L Holm; Chris Sander
Dictionary of recurrent domains in protein structures.
Proteins 1998;33(1):88-96.
1998: L Holm; Chris Sander
Removing near-neighbour redundancy from large protein sequence collections.
Bioinformatics (Oxford, England) 1998;14(5):423-9.
1998: Miguel Andrade; Chris Sander; A Valencia
Updated catalogue of homologues to human disease-related proteins in the yeast genome.
FEBS letters 1998;426(1):7-16.
1998: Christos Ouzounis; C Pérez-Irratxeta; Chris Sander; A Valencia
Are binding residues conserved?
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():401-12.
1998: Javier Tamames; Christos Ouzounis; G Casari; Chris Sander; Carmen Galvez
EUCLID: automatic classification of proteins in functional classes by their database annotations.
Bioinformatics (Oxford, England) 1998;14(6):542-3.
1998: F Horn; R Bywater; Gerd Krause; W Kuipers; L Oliveira; A C Paiva; Chris Sander; G Vriend
The interaction of class B G protein-coupled receptors with their hormones.
Receptors & channels 1998;5(5):305-14.
1998: NP Brown; Christophe Leroy; Chris Sander
MView: a web-compatible database search or multiple alignment viewer.
Bioinformatics (Oxford, England) 1998;14(4):380-1.
1998: NP Brown; Chris Sander; P Bork
Frame: detection of genomic sequencing errors.
Bioinformatics (Oxford, England) 1998;14(4):367-71.
1998: L Holm; Chris Sander
Touring protein fold space with Dali/FSSP.
Nucleic acids research 1998;26(1):316-9.
1998: C Dodge; Reinhard Schneider; Chris Sander
The HSSP database of protein structure-sequence alignments and family profiles.
Nucleic acids research 1998;26(1):313-5.
1997: Miguel Andrade; Chris Sander
Bioinformatics: from genome data to biological knowledge.
Current opinion in biotechnology 1997;8(6):675-83.
1997: Miguel Andrade; A Daruvar; G Casari; Reinhard Schneider; M Termier; Chris Sander
Characterization of new proteins found by analysis of short open reading frames from the full yeast genome.
Yeast (Chichester, England) 1997;13(14):1363-74.
1997: Miguel Andrade; G Casari; A de Daruvar; Chris Sander; Reinhard Schneider; Javier Tamames; Carmen Galvez; Christos Ouzounis
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
Computer applications in the biosciences : CABIOS 1997;13(4):481-3.
1997: Rob Hooft; Chris Sander; G Vriend
Objectively judging the quality of a protein structure from a Ramachandran plot.
Computer applications in the biosciences : CABIOS 1997;13(4):425-30.
1997: B Rost; Reinhard Schneider; Chris Sander
Protein fold recognition by prediction-based threading.
Journal of molecular biology 1997;270(3):471-80.
1997: H Voss; Vladimir Benes; Miguel Andrade; A Valencia; S Rechmann; C Teodoru; Christian Schwager; Václav Paces; Chris Sander; Wilhelm Ansorge
DNA sequencing and analysis of 130 kb from yeast chromosome XV.
Yeast (Chichester, England) 1997;13(7):655-72.
1997: Miguel Andrade; G Casari; Chris Sander; A Valencia
Classification of protein families and detection of the determinant residues with an improved self-organizing map.
Biological cybernetics 1997;76(6):441-50.
1997: L Holm; Chris Sander
An evolutionary treasure: unification of a broad set of amidohydrolases related to urease.
Proteins 1997;28(1):72-82.
1997: L Holm; Chris Sander
Enzyme HIT.
Trends in biochemical sciences 1997;22(4):116-7.
1997: L Holm; Chris Sander
New structure--novel fold?
Structure (London, England : 1993) 1997;5(2):165-71.
1997: Kevin Karplus; Kimmen Sjölander; C Barrett; Melissa Cline; David Haussler; Richard Hughey; L Holm; Chris Sander
Predicting protein structure using hidden Markov models.
Proteins 1997;Suppl 1():134-9.
1997: L Holm; Chris Sander
Decision support system for the evolutionary classification of protein structures.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():140-6.
1997: Liisa Holm; Chris Sander
Dali/FSSP classification of three-dimensional protein folds.
Nucleic acids research 1997;25(1):231-4.
1997: Reinhard Schneider; A de Daruvar; Chris Sander
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1997;25(1):226-30.
1996: Rob Hooft; Chris Sander; M Scharf; G Vriend
The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value.
Computer applications in the biosciences : CABIOS 1996;12(6):525-9.
1996: Rob Hooft; Chris Sander; G Vriend
Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures.
Proteins 1996;26(4):363-76.
1996: D J Thomas; G Casari; Chris Sander
The prediction of protein contacts from multiple sequence alignments.
Protein engineering 1996;9(11):941-8.
1996: L G Eide; Chris Sander; H Prydz
Sequencing and analysis of a 35.4 kb region on the right [corrected] arm of chromosome IV from Saccharomyces cerevisiae reveal 23 open reading frames.
Yeast (Chichester, England) 1996;12(10B Suppl):1085-90.
1996: L Holm; Chris Sander
Mapping the protein universe.
Science (New York, N.Y.) 1996;273(5275):595-603.
1996: Christos Ouzounis; G Casari; Chris Sander; Javier Tamames; Carmen Galvez
Computational comparisons of model genomes.
Trends in biotechnology 1996;14(8):280-5.
1996: G Casari; A De Daruvar; Chris Sander; Reinhard Schneider
Bioinformatics and the discovery of gene function.
Trends in genetics : TIG 1996;12(7):244-5.
1996: P M Gray; G J Kemp; C J Rawlings; N P Brown; Chris Sander; J M Thornton; C M Orengo; S J Wodak; J Richelle
Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium.
Trends in biochemical sciences 1996;21(7):251-6.
1996: Javier Tamames; Christos Ouzounis; Chris Sander; Carmen Galvez
Genomes with distinct function composition.
FEBS letters 1996;389(1):96-101.
1996: Rob Hooft; G Vriend; Chris Sander; E E Abola
Errors in protein structures.
Nature 1996;381(6580):272.
1996: Christos Ouzounis; G Casari; Carmen Galvez; Chris Sander
Novelties from the complete genome of Mycoplasma genitalium.
Molecular microbiology 1996;20(4):898-900.
1996: Daan M F van Aalten; Andrea Amadei; R Bywater; John B C Findlay; Herman J C Berendsen; Chris Sander; P F Stouten
A comparison of structural and dynamic properties of different simulation methods applied to SH3.
Biophysical journal 1996;70(2):684-92.
1996: B Rost; Chris Sander
Bridging the protein sequence-structure gap by structure predictions.
Annual review of biophysics and biomolecular structure 1996;25():113-36.
1996: L Holm; Chris Sander
Alignment of three-dimensional protein structures: network server for database searching.
Methods in enzymology 1996;266():653-62.
1996: L Holm; Chris Sander
The FSSP database: fold classification based on structure-structure alignment of proteins.
Nucleic acids research 1996;24(1):206-9.
1996: Reinhard Schneider; Chris Sander
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1996;24(1):201-5.
1995: Glay Chinea; Gabriel Padron; Rob Hooft; Chris Sander; G Vriend
The use of position-specific rotamers in model building by homology.
Proteins 1995;23(3):415-21.
1995: B Rost; Chris Sander
Progress of 1D protein structure prediction at last.
Proteins 1995;23(3):295-300.
1995: L Holm; Chris Sander
Dali: a network tool for protein structure comparison.
Trends in biochemical sciences 1995;20(11):478-80.
1995: Christos Ouzounis; Peer Bork; G Casari; Chris Sander
New protein functions in yeast chromosome VIII.
Protein science : a publication of the Protein Society 1995;4(11):2424-8.
1995: Irene Konstantopoulou; Christos Ouzounis; Elena Drosopoulou; Minas Yiangou; P Sideras; Chris Sander; Zacharias G Scouras
A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci.
Journal of molecular evolution 1995;41(4):414-20.
1995: L Holm; Chris Sander
DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily.
Trends in biochemical sciences 1995;20(9):345-7.
1995: G Casari; Miguel Andrade; Peer Bork; J Boyle; A Daruvar; Christos Ouzounis; Reinhard Schneider; Javier Tamames; Carmen Galvez; Chris Sander
Challenging times for bioinformatics.
Nature 1995;376(6542):647-8.
1995: U Hobohm; Chris Sander
A sequence property approach to searching protein databases.
Journal of molecular biology 1995;251(3):390-9.
1995: P Bork; L Holm; E V Koonin; Chris Sander
The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction.
Proteins 1995;22(3):259-66.
1995: P Cronet; L Bellsolell; Chris Sander; Miquel Coll; Luis Serrano
Investigating the structural determinants of the p21-like triphosphate and Mg2+ binding site.
Journal of molecular biology 1995;249(3):654-64.
1995: Peer Bork; Christos Ouzounis; G Casari; Reinhard Schneider; Chris Sander; M Dolan; Walter Gilbert; P M Gillevet
Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology.
Molecular microbiology 1995;16(5):955-67.
1995: L Holm; Chris Sander
Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme.
The EMBO journal 1995;14(7):1287-93.
1995: B Rost; Rita Casadio; Piero Fariselli; Chris Sander
Transmembrane helices predicted at 95% accuracy.
Protein science : a publication of the Protein Society 1995;4(3):521-33.
1995: Christos Ouzounis; Nikos Kyrpides; Chris Sander
Novel protein families in archaean genomes.
Nucleic acids research 1995;23(4):565-70.
1995: G Casari; Chris Sander; A Valencia
A method to predict functional residues in proteins.
Nature structural biology 1995;2(2):171-8.
1995: H Voss; Javier Tamames; C Teodoru; Carmen Galvez; Christoph Wilhelm Sensen; Stefan Wiemann; C Schwager; J Zimmermann; Chris Sander; Wilhelm Ansorge
Nucleotide sequence and analysis of the centromeric region of yeast chromosome IX.
Yeast (Chichester, England) 1995;11(1):61-78.
1995: L Holm; Chris Sander
3-D lookup: fast protein structure database searches at 90% reliability.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():179-87.
1994: L Holm; Chris Sander; H Rüterjans; M Schnarr; R Fogh; Rolf Boelens; Robert Kaptein
LexA repressor and iron uptake regulator from Escherichia coli: new members of the CAP-like DNA binding domain superfamily.
Protein engineering 1994;7(12):1449-53.
1994: B Rost; Chris Sander
Conservation and prediction of solvent accessibility in protein families.
Proteins 1994;20(3):216-26.
1994: M Sánchez; A Valencia; M J Ferrándiz; Chris Sander; Miguel Vicente
Correlation between the structure and biochemical activities of FtsA, an essential cell division protein of the actin family.
The EMBO journal 1994;13(20):4919-25.
1994: U Hobohm; Tony Houthaeve; Chris Sander
Amino acid analysis and protein database compositional search as a rapid and inexpensive method to identify proteins.
Analytical biochemistry 1994;222(1):202-9.
1994: V De Filippis; Chris Sander; G Vriend
Predicting local structural changes that result from point mutations.
Protein engineering 1994;7(10):1203-8.
1994: Peer Bork; L Holm; Chris Sander
The immunoglobulin fold. Structural classification, sequence patterns and common core.
Journal of molecular biology 1994;242(4):309-20.
1994: L Holm; Chris Sander
The FSSP database of structurally aligned protein fold families.
Nucleic acids research 1994;22(17):3600-9.
1994: Chris Sander; Reinhard Schneider
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1994;22(17):3597-9.
1994: B Rost; Chris Sander
Structure prediction of proteins--where are we now?
Current opinion in biotechnology 1994;5(4):372-80.
1994: E Burkhardt; Ibrahim M Adham; U Hobohm; Derek Murphy; Chris Sander; Wolfgang Engel
A human cDNA coding for the Leydig insulin-like peptide (Ley I-L).
Human genetics 1994;94(1):91-4.
1994: L Holm; Chris Sander
Parser for protein folding units.
Proteins 1994;19(3):256-68.
1994: L Holm; Chris Sander
Searching protein structure databases has come of age.
Proteins 1994;19(3):165-73.
1994: Eugene V Koonin; P Bork; Chris Sander
A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
Nucleic acids research 1994;22(11):2166-7.
1994: L Oliveira; A C Paiva; Chris Sander; G Vriend
A common step for signal transduction in G protein-coupled receptors.
Trends in pharmacological sciences 1994;15(6):170-2.
1994: B Rost; Chris Sander
Combining evolutionary information and neural networks to predict protein secondary structure.
Proteins 1994;19(1):55-72.
1994: Christos Ouzounis; Peer Bork; Chris Sander
The modular structure of NifU proteins.
Trends in biochemical sciences 1994;19(5):199-200.
1994: Chris Sander
Design of protein structures: helix bundles and beyond.
Trends in biotechnology 1994;12(5):163-7.
1994: U Göbel; Chris Sander; Reinhard Schneider; A Valencia
Correlated mutations and residue contacts in proteins.
Proteins 1994;18(4):309-17.
1994: A Buchberger; A Valencia; ROGER MCMACKEN; Chris Sander; Bernd Bukau
The chaperone function of DnaK requires the coupling of ATPase activity with substrate binding through residue E171.
The EMBO journal 1994;13(7):1687-95.
1994: I N Shindyalov; Nikolay A Kolchanov; Chris Sander
Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
Protein engineering 1994;7(3):349-58.
1994: U Hobohm; Chris Sander
Enlarged representative set of protein structures.
Protein science : a publication of the Protein Society 1994;3(3):522-4.
1994: L Holm; Chris Sander; A Murzin
Three sisters, different names.
Nature structural biology 1994;1(3):146-7.
1994: L Holm; Chris Sander
Structural similarity of plant chitinase and lysozymes from animals and phage. An evolutionary connection.
FEBS letters 1994;340(1-2):129-32.
1994: Eugene V Koonin; P Bork; Chris Sander
Yeast chromosome III: new gene functions.
The EMBO journal 1994;13(3):493-503.
1994: B Rost; Chris Sander; Reinhard Schneider
PHD--an automatic mail server for protein secondary structure prediction.
Computer applications in the biosciences : CABIOS 1994;10(1):53-60.
1994: B Rost; Chris Sander; Reinhard Schneider
Redefining the goals of protein secondary structure prediction.
Journal of molecular biology 1994;235(1):13-26.
1994: G Vriend; Chris Sander; P F Stouten
A novel search method for protein sequence--structure relations using property profiles.
Protein engineering 1994;7(1):23-9.
1994: M Scharf; Reinhard Schneider; G Casari; Peer Bork; Carmen Galvez; Christos Ouzounis; Chris Sander
GeneQuiz: a workbench for sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():348-53.
1993: Thomas Meitinger; Alfons Meindl; P Bork; B Rost; Chris Sander; M Haasemann; Jan Murken
Molecular modelling of the Norrie disease protein predicts a cystine knot growth factor tertiary structure.
Nature genetics 1993;5(4):376-80.
1993: Peer Bork; Chris Sander
A hybrid protein kinase-RNase in an interferon-induced pathway?
FEBS letters 1993;334(2):149-52.
1993: B Rost; Chris Sander
Secondary structure prediction of all-helical proteins in two states.
Protein engineering 1993;6(8):831-6.
1993: U Hobohm; Chris Sander
Does the HIV Nef protein mimic the MHC?
FEBS letters 1993;333(3):211-3.
1993: L Holm; Chris Sander
Protein structure comparison by alignment of distance matrices.
Journal of molecular biology 1993;233(1):123-38.
1993: B Rost; Chris Sander
Improved prediction of protein secondary structure by use of sequence profiles and neural networks.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(16):7558-62.
1993: Christos Ouzounis; Chris Sander; M Scharf; Reinhard Schneider
Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
Journal of molecular biology 1993;232(3):805-25.
1993: B Rost; Chris Sander
Prediction of protein secondary structure at better than 70% accuracy.
Journal of molecular biology 1993;232(2):584-99.
1993: Chris Sander; Reinhard Schneider
The HSSP data base of protein structure-sequence alignments.
Nucleic acids research 1993;21(13):3105-9.
1993: Jonathan Reizer; A Reizer; Milton H Saier; P Bork; Chris Sander
Exopolyphosphate phosphatase and guanosine pentaphosphate phosphatase belong to the sugar kinase/actin/hsp 70 superfamily.
Trends in biochemical sciences 1993;18(7):247-8.
1993: Christos Ouzounis; Chris Sander
Homology of the NifS family of proteins to a new class of pyridoxal phosphate-dependent enzymes.
FEBS letters 1993;322(2):159-64.
1993: B Rost; Reinhard Schneider; Chris Sander
Progress in protein structure prediction?
Trends in biochemical sciences 1993;18(4):120-3.
1993: P F Stouten; Chris Sander; A Wittinghofer; Carmen Galvez
How does the switch II region of G-domains work?
FEBS letters 1993;320(1):1-6.
1993: Anne-Brit Kolstø; P Bork; K Kvaløy; T Lindback; A Grønstadt; T Kristensen; Chris Sander
Prokaryotic members of a new family of putative helicases with similarity to transcription activator SNF2.
Journal of molecular biology 1993;230(2):684-8.
1993: L Holm; Chris Sander
Globin fold in a bacterial toxin.
Nature 1993;361(6410):309.
1993: L Holm; Chris Sander
Structural alignment of globins, phycocyanins and colicin A.
FEBS letters 1993;315(3):301-6.
1993: Peer Bork; Chris Sander; Carmen Galvez
Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases.
Protein science : a publication of the Protein Society 1993;2(1):31-40.
1993: P Cronet; Chris Sander; G Vriend
Modeling of transmembrane seven helix bundles.
Protein engineering 1993;6(1):59-64.
1992: B Rost; Chris Sander
Jury returns on structure prediction.
Nature 1992;360(6404):540.
1992: L E Lehmann; W Eberle; S Krull; V Prill; B Schmidt; Chris Sander; Kurt von Figura; Christoph Peters
The internalization signal in the cytoplasmic tail of lysosomal acid phosphatase consists of the hexapeptide PGYRHV.
The EMBO journal 1992;11(12):4391-9.
1992: L Holm; Christos Ouzounis; Chris Sander; G Tuparev; G Vriend
A database of protein structure families with common folding motifs.
Protein science : a publication of the Protein Society 1992;1(12):1691-8.
1992: Peer Bork; Christos Ouzounis; Chris Sander; M Scharf; Reinhard Schneider; E Sonnhammer
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.
Protein science : a publication of the Protein Society 1992;1(12):1677-90.
1992: Christos Ouzounis; Chris Sander
TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes.
Cell 1992;71(2):189-90.
1992: L Holm; Chris Sander
Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology.
Proteins 1992;14(2):213-23.
1992: P F Stouten; Chris Sander; R W Ruigrok; S Cusack
New triple-helical model for the shaft of the adenovirus fibre.
Journal of molecular biology 1992;226(4):1073-84.
1992: Peer Bork; Chris Sander; Carmen Galvez
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(16):7290-4.
1992: P Bork; Christos Ouzounis; Chris Sander; M Scharf; Reinhard Schneider; E Sonnhammer
What's in a genome?
Nature 1992;358(6384):287.
1992: L Holm; Chris Sander
Evaluation of protein models by atomic solvation preference.
Journal of molecular biology 1992;225(1):93-105.
1992: Peer Bork; Chris Sander
A large domain common to sperm receptors (Zp2 and Zp3) and TGF-beta type III receptor.
FEBS letters 1992;300(3):237-40.
1992: Peer Bork; Chris Sander; A Valencia; B Bukau
A module of the DnaJ heat shock proteins found in malaria parasites.
Trends in biochemical sciences 1992;17(4):129.
1992: G Tuparev; G Vriend; Chris Sander
GCI: a network server for interactive 3D graphics.
Journal of molecular graphics 1992;10(1):12-6.
1992: U Hobohm; M Scharf; Reinhard Schneider; Chris Sander
Selection of representative protein data sets.
Protein science : a publication of the Protein Society 1992;1(3):409-17.
1992: Chris Sander; G Vriend; J. Fernando Bazan; A Horovitz; H Nakamura; L Ribas; A V Finkelstein; ANDREW LOCKHART; Rainer Merkl; L J Perry
Protein design on computers. Five new proteins: Shpilka, Grendel, Fingerclasp, Leather, and Aida.
Proteins 1992;12(2):105-10.
1992: Klaus Palme; T Diefenthal; M Vingron; Chris Sander; Jeff Schell
Molecular cloning and structural analysis of genes from Zea mays (L.) coding for members of the ras-related ypt gene family.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(2):787-91.
1991: W Eberle; Chris Sander; W Klaus; B Schmidt; Kurt von Figura; C Peters
The essential tyrosine of the internalization signal in lysosomal acid phosphatase is part of a beta turn.
Cell 1991;67(6):1203-9.
1991: R Janknecht; Chris Sander; O Pongs
(HX)n repeats: a pH-controlled protein-protein interaction motif of eukaryotic transcription factors?
FEBS letters 1991;295(1-3):1-2.
1991: Tim Hubbard; Chris Sander
The role of heat-shock and chaperone proteins in protein folding: possible molecular mechanisms.
Protein engineering 1991;4(7):711-7.
1991: Carmen Galvez; M Kjeldgaard; E F Pai; Chris Sander
GTPase domains of ras p21 oncogene protein and elongation factor Tu: analysis of three-dimensional structures, sequence families, and functional sites.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(12):5443-7.
1991: Carmen Galvez; P Chardin; A Wittinghofer; Chris Sander
The ras protein family: evolutionary tree and role of conserved amino acids.
Biochemistry 1991;30(19):4637-48.
1991: R Grandori; Chris Sander
Identification by computer sequence analysis of transcriptional regulator proteins in Dictyostelium discoideum and Serratia marcescens.
Nucleic acids research 1991;19(9):2359-62.
1991: W Eberle; A Pastore; Chris Sander; Paul Rösch
The structure of ColE1 rop in solution.
Journal of biomolecular NMR 1991;1(1):71-82.
1991: L Holm; Chris Sander
Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.
Journal of molecular biology 1991;218(1):183-94.
1991: Christos Ouzounis; Chris Sander
A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins.
FEBS letters 1991;279(1):73-8.
1991: Chris Sander; Reinhard Schneider
Database of homology-derived protein structures and the structural meaning of sequence alignment.
Proteins 1991;9(1):56-68.
1991: G Vriend; Chris Sander
Detection of common three-dimensional substructures in proteins.
Proteins 1991;11(1):52-8.
1990: Philippe Chavrier; M Vingron; Chris Sander; Kai Simons; Marino Zerial
Molecular cloning of YPT1/SEC4-related cDNAs from an epithelial cell line.
Molecular and cellular biology 1990;10(12):6578-85.
1990: W Eberle; W Klaus; Gianni Cesareni; Chris Sander; Paul Rösch
Proton nuclear magnetic resonance assignments and secondary structure determination of the ColE1 rop (rom) protein.
Biochemistry 1990;29(32):7402-7.
1990: F Colonna-Cesari; Chris Sander
Excluded volume approximation to protein-solvent interaction. The solvent contact model.
Biophysical journal 1990;57(5):1103-7.
1990: Chris Sander
Inverting the protein-folding problem.
Biochemical Society symposium 1990;57():25-33.
1989: A Godzik; Chris Sander
Conservation of residue interactions in a family of Ca-binding proteins.
Protein engineering 1989;2(8):589-96.
1989: C Frömmel; Chris Sander
Thermitase, a thermostable subtilisin: comparison of predicted and experimental structures and the molecular cause of thermostability.
Proteins 1989;5(1):22-37.
1985: W Kabsch; Chris Sander
Identical pentapeptides with different backbones.
Nature 1985;317(6034):207.
1985: R S Brown; Chris Sander; P Argos
The primary structure of transcription factor TFIIIA has 12 consecutive repeats.
FEBS letters 1985;186(2):271-4.
1985: M Levitt; Chris Sander; P S Stern
Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme.
Journal of molecular biology 1985;181(3):423-47.
1984: W Kabsch; Chris Sander
On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(4):1075-8.
1983: W Kabsch; Chris Sander
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
Biopolymers 1983;22(12):2577-637.
1983: W Kabsch; Chris Sander
How good are predictions of protein secondary structure?
FEBS letters 1983;155(2):179-82.
1981: W G Hol; L M Halie; Chris Sander
Dipoles of the alpha-helix and beta-sheet: their role in protein folding.
Nature 1981;294(5841):532-6.
1980: S Lifson; Chris Sander
Specific recognition in the tertiary structure of beta-sheets of proteins.
Journal of molecular biology 1980;139(4):627-39.
1979: S Lifson; Chris Sander
Antiparallel and parallel beta-strands differ in amino acid residue preferences.
Nature 1979;282(5734):109-11.