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Chris Sander
This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers
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25
Ouzounis, Christos
21
Schneider, Reinhard
17
Galvez, Carmen
12
Andrade, Miguel
12
Bork, Peer
11
Tuschl, Thomas
9
Tamames, Javier
7
Bader, Gary
7
Marks, Debora
7
Russo, James
7
Sheridan, Robert
6
Ju, Jingyue
6
Leroy, Christophe
6
Chien, Minchen
6
Zavolan, Mihaela
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All Publications
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2009: Rajasethupathy Priyamvada; Fiumara Ferdinando; Sheridan Robert; Betel Doron; Puthanveettil Sathyanarayanan V; Russo James J; Sander Chris; Tuschl Thomas; Kandel Eric
Characterization of small RNAs in aplysia reveals a role for miR-124 in constraining synaptic plasticity through CREB.
Neuron 2009;63(6):803-17.
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2009: Chitale D; Gong Y; Taylor B S; Broderick S; Brennan C; Somwar R; Golas B; Wang L; Motoi N; Szoke J; Reinersman J M; Major J; Sander C; Seshan V E; Zakowski M F; Rusch V; Pao W; Gerald W; Ladanyi M
An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors.
Oncogene 2009;28(31):2773-83.
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2009: Veeriah Selvaraju; Brennan Cameron; Meng Shasha; Singh Bhuvanesh; Fagin James A; Solit David B; Paty Philip B; Rohle Dan; Vivanco Igor; Chmielecki Juliann; Pao William; Ladanyi Marc; Gerald William L; Liau Linda; Cloughesy Timothy C; Mischel Paul S; Sander Chris; Taylor Barry; Schultz Nikolaus; Major John; Heguy Adriana; Fang Fang; Mellinghoff Ingo K; Chan Timothy A
The tyrosine phosphatase PTPRD is a tumor suppressor that is frequently inactivated and mutated in glioblastoma and other human cancers.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(23):9435-40.
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2009: Khan Aly A; Betel Doron; Miller Martin L; Sander Chris; Leslie Christina S; Marks Debora S
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs.
Nature biotechnology 2009;27(6):549-55.
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2009: King Jennifer C; Xu Jin; Wongvipat John; Hieronymus Haley; Carver Brett S; Leung David H; Taylor Barry S; Sander Chris; Cardiff Robert D; Couto Suzana S; Gerald William L; Sawyers Charles L
Cooperativity of TMPRSS2-ERG with PI3-kinase pathway activation in prostate oncogenesis.
Nature genetics 2009;41(5):524-6.
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2009: Pratilas Christine A; Taylor Barry S; Ye Qing; Viale Agnes; Sander Chris; Solit David B; Rosen Neal
(V600E)BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(11):4519-24.
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2009: Aebersold Ruedi; Auffray Charles; Baney Erin; Barillot Emmanuel; Brazma Alvis; Brett Catherine; Brunak Søren; Butte Atul; Califano Andrea; Celis Julio; Cufer Tanja; Ferrell James; Galas David; Gallahan Daniel; Gatenby Robert; Goldbeter Albert; Hace Natasa; Henney Adriano; Hood Lee; Iyengar Ravi; Jackson Vicky; Kallioniemi Ollie; Klingmüller Ursula; Kolar Patrik; Kolch Walter; Kyriakopoulou Christina; Laplace Frank; Lehrach Hans; Marcus Frederick; Matrisian Lynn; Nolan Garry; Pelkmans Lucas; Potti Anil; Sander Chris; Seljak Marija; Singer Dinah; Sorger Peter; Stunnenberg Hendrik; Superti-Furga Giulio; Uhlen Mathias; Vidal Marc; Weinstein John; Wigle Dennis; Williams Michael; Wolkenhauer Olaf; Zhivotovsky Boris; Zinovyev Andrei; Zupan Blaz
Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).
Molecular oncology 2009;3(1):9-17.
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2009: Yi Rui; Pasolli H Amalia; Landthaler Markus; Hafner Markus; Ojo Tolulope; Sheridan Robert; Sander Chris; O'Carroll Donal; Stoffel Markus; Tuschl Thomas; Fuchs Elaine
DGCR8-dependent microRNA biogenesis is essential for skin development.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(2):498-502.
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2008: Tonikian Raffi; Zhang Yingnan; Sazinsky Stephen L; Currell Bridget; Yeh Jung-Hua; Reva Boris; Held Heike A; Appleton Brent A; Evangelista Marie; Wu Yan; Xin Xiaofeng; Chan Andrew C; Seshagiri Somasekar; Lasky Laurence A; Sander Chris; Boone Charles; Bader Gary D; Sidhu Sachdev S
A specificity map for the PDZ domain family.
PLoS biology 2008;6(9):e239.
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2008: Betel Doron; Wilson Manda; Gabow Aaron; Marks Debora S; Sander Chris
The microRNA.org resource: targets and expression.
Nucleic acids research 2008;36(Database issue):D149-53.
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2008: Leitner Florian; Krallinger Martin; Rodriguez-Penagos Carlos; Hakenberg Jörg; Plake Conrad; Kuo Cheng-Ju; Hsu Chun-Nan; Tsai Richard Tzong-Han; Hung Hsi-Chuan; Lau William W; Johnson Calvin A; Saetre Rune; Yoshida Kazuhiro; Chen Yan Hua; Kim Sun; Shin Soo-Yong; Zhang Byoung-Tak; Baumgartner William A; Hunter Lawrence; Haddow Barry; Matthews Michael; Wang Xinglong; Ruch Patrick; Ehrler Frédéric; Ozgür Arzucan; Erkan Günes; Radev Dragomir R; Krauthammer Michael; Luong ThaiBinh; Hoffmann Robert; Sander Chris; Valencia Alfonso
Introducing meta-services for biomedical information extraction.
Genome biology 2008;9 Suppl 2():S6.
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2008: Taylor Barry S; Barretina Jordi; Socci Nicholas D; Decarolis Penelope; Ladanyi Marc; Meyerson Matthew; Singer Samuel; Sander Chris
Functional copy-number alterations in cancer.
PloS one 2008;3(9):e3179.
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2008: Nelander Sven; Wang Weiqing; Nilsson Björn; She Qing-Bai; Pratilas Christine; Rosen Neal; Gennemark Peter; Sander Chris
Models from experiments: combinatorial drug perturbations of cancer cells.
Molecular systems biology 2008;4():216.
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2008: Aragues Ramon; Sander Chris; Oliva Baldo
Predicting cancer involvement of genes from heterogeneous data.
BMC bioinformatics 2008;9():172.
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2007: Betel Doron; Sheridan Robert; Marks Debora S; Sander Chris
Computational analysis of mouse piRNA sequence and biogenesis.
PLoS computational biology 2007;3(11):e222.
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2007: Singer Samuel; Socci Nicholas D; Ambrosini Grazia; Sambol Elliot; Decarolis Penelope; Wu Yuhsin; O'Connor Rachael; Maki Robert; Viale Agnes; Sander Chris; Schwartz Gary K; Antonescu Cristina R
Gene expression profiling of liposarcoma identifies distinct biological types/subtypes and potential therapeutic targets in well-differentiated and dedifferentiated liposarcoma.
Cancer research 2007;67(14):6626-36.
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2007: Randall Glenn; Panis Maryline; Cooper Jacob D; Tellinghuisen Timothy L; Sukhodolets Karen E; Pfeffer Sebastien; Landthaler Markus; Landgraf Pablo; Kan Sherry; Lindenbach Brett D; Chien Minchen; Weir David B; Russo James J; Ju Jingyue; Brownstein Michael J; Sheridan Robert; Sander Chris; Zavolan Mihaela; Tuschl Thomas; Rice Charles M
Cellular cofactors affecting hepatitis C virus infection and replication.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12884-9.
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2007: Landgraf Pablo; Rusu Mirabela; Sheridan Robert; Sewer Alain; Iovino Nicola; Aravin Alexei; Pfeffer Sébastien; Rice Amanda; Kamphorst Alice O; Landthaler Markus; Lin Carolina; Socci Nicholas D; Hermida Leandro; Fulci Valerio; Chiaretti Sabina; Foà Robin; Schliwka Julia; Fuchs Uta; Novosel Astrid; Müller Roman-Ulrich; Schermer Bernhard; Bissels Ute; Inman Jason; Phan Quang; Chien Minchen; Weir David B; Choksi Ruchi; De Vita Gabriella; Frezzetti Daniela; Trompeter Hans-Ingo; Hornung Veit; Teng Grace; Hartmann Gunther; Palkovits Miklos; Di Lauro Roberto; Wernet Peter; Macino Giuseppe; Rogler Charles E; Nagle James W; Ju Jingyue; Papavasiliou F Nina; Benzing Thomas; Lichter Peter; Tam Wayne; Brownstein Michael J; Bosio Andreas; Borkhardt Arndt; Russo James J; Sander Chris; Zavolan Mihaela; Tuschl Thomas
A mammalian microRNA expression atlas based on small RNA library sequencing.
Cell 2007;129(7):1401-14.
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2007: Fulci Valerio; Chiaretti Sabina; Goldoni Marina; Azzalin Gianluca; Carucci Nicoletta; Tavolaro Simona; Castellano Leandro; Magrelli Armando; Citarella Franca; Messina Monica; Maggio Roberta; Peragine Nadia; Santangelo Simona; Mauro Francesca Romana; Landgraf Pablo; Tuschl Thomas; Weir David B; Chien Minchen; Russo James J; Ju Jingyue; Sheridan Robert; Sander Chris; Zavolan Mihaela; Guarini Anna; Foà Robin; Macino Giuseppe
Quantitative technologies establish a novel microRNA profile of chronic lymphocytic leukemia.
Blood 2007;109(11):4944-51.
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2007: Mathew Jomol P; Taylor Barry S; Bader Gary D; Pyarajan Saiju; Antoniotti Marco; Chinnaiyan Arul M; Sander Chris; Burakoff Steven J; Mishra Bud
From bytes to bedside: data integration and computational biology for translational cancer research.
PLoS computational biology 2007;3(2):e12.
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2007: Higgins Maureen E; Claremont Martine; Major John E; Sander Chris; Lash Alex E
CancerGenes: a gene selection resource for cancer genome projects.
Nucleic acids research 2007;35(Database issue):D721-6.
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2007: Reva Boris; Antipin Yevgeniy; Sander Chris
Determinants of protein function revealed by combinatorial entropy optimization.
Genome biology 2007;8(11):R232.
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2007: Cline Melissa S; Smoot Michael; Cerami Ethan; Kuchinsky Allan; Landys Nerius; Workman Chris; Christmas Rowan; Avila-Campilo Iliana; Creech Michael; Gross Benjamin; Hanspers Kristina; Isserlin Ruth; Kelley Ryan; Killcoyne Sarah; Lotia Samad; Maere Steven; Morris John; Ono Keiichiro; Pavlovic Vuk; Pico Alexander R; Vailaya Aditya; Wang Peng-Liang; Adler Annette; Conklin Bruce R; Hood Leroy; Kuiper Martin; Sander Chris; Schmulevich Ilya; Schwikowski Benno; Warner Guy J; Ideker Trey; Bader Gary D
Integration of biological networks and gene expression data using Cytoscape.
Nature protocols 2007;2(10):2366-82.
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2007: Cotignola Javier; Reva Boris; Mitra Nandita; Ishill Nicole; Chuai Shaokun; Patel Ami; Shah Shivang; Vanderbeek Gretchen; Coit Daniel; Busam Klaus; Halpern Allan; Houghton Alan; Sander Chris; Berwick Marianne; Orlow Irene
Matrix Metalloproteinase-9 (MMP-9) polymorphisms in patients with cutaneous malignant melanoma.
BMC medical genetics 2007;8():10.
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2006: Aravin Alexei; Gaidatzis Dimos; Pfeffer Sébastien; Lagos-Quintana Mariana; Landgraf Pablo; Iovino Nicola; Morris Patricia; Brownstein Michael J; Kuramochi-Miyagawa Satomi; Nakano Toru; Chien Minchen; Russo James J; Ju Jingyue; Sheridan Robert; Sander Chris; Zavolan Mihaela; Tuschl Thomas
A novel class of small RNAs bind to MILI protein in mouse testes.
Nature 2006;442(7099):203-7.
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2006: Vilar Jose M G; Jansen Ronald; Sander Chris
Signal processing in the TGF-beta superfamily ligand-receptor network.
PLoS computational biology 2006;2(1):e3.
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2006: Bader Gary D; Cary Michael P; Sander Chris
Pathguide: a pathway resource list.
Nucleic acids research 2006;34(Database issue):D504-6.
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2006: Cerami Ethan G; Bader Gary D; Gross Benjamin E; Sander Chris
cPath: open source software for collecting, storing, and querying biological pathways.
BMC bioinformatics 2006;7():497.
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2006: John Bino; Sander Chris; Marks Debora S
Prediction of human microRNA targets.
Methods in molecular biology (Clifton, N.J.) 2006;342():101-13.
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2005: Leaman Dan; Chen Po Yu; Fak John; Yalcin Abdullah; Pearce Michael; Unnerstall Ulrich; Marks Debora S; Sander Chris; Tuschl Thomas; Gaul Ulrike
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development.
Cell 2005;121(7):1097-108.
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2005: Chen Po Yu; Manninga Heiko; Slanchev Krasimir; Chien Minchen; Russo James J; Ju Jingyue; Sheridan Robert; John Bino; Marks Debora S; Gaidatzis Dimos; Sander Chris; Zavolan Mihaela; Tuschl Thomas
The developmental miRNA profiles of zebrafish as determined by small RNA cloning.
Genes & development 2005;19(11):1288-93.
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2005: Pfeffer Sébastien; Sewer Alain; Lagos-Quintana Mariana; Sheridan Robert; Sander Chris; Grässer Friedrich A; van Dyk Linda F; Ho C Kiong; Shuman Stewart; Chien Minchen; Russo James J; Ju Jingyue; Randall Glenn; Lindenbach Brett D; Rice Charles M; Simon Viviana; Ho David D; Zavolan Mihaela; Tuschl Thomas
Identification of microRNAs of the herpesvirus family.
Nature methods 2005;2(4):269-76.
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2005: Cary Michael P; Bader Gary D; Sander Chris
Pathway information for systems biology.
FEBS letters 2005;579(8):1815-20.
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2005: Monticelli Silvia; Ansel K Mark; Xiao Changchun; Socci Nicholas D; Krichevsky Anna M; Thai To-Ha; Rajewsky Nikolaus; Marks Debora S; Sander Chris; Rajewsky Klaus; Rao Anjana; Kosik Kenneth S
MicroRNA profiling of the murine hematopoietic system.
Genome biology 2005;6(8):R71.
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2004: John Bino; Enright Anton J; Aravin Alexei; Tuschl Thomas; Sander Chris; Marks Debora S
Human MicroRNA targets.
PLoS biology 2004;2(11):e363.
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2004: Pradines Joel; Rudolph-Owen Laura; Hunter John; Leroy Patrick; Cary Michael; Coopersmith Robert; Dancik Vlado; Eltsefon Yelena; Farutin Victor; Leroy Christophe; Rees Jonathan; Rose David; Rowley Steve; Ruttenberg Alan; Wieghardt Patrick; Sander Chris; Reich Christian
Detection of activity centers in cellular pathways using transcript profiling.
Journal of biopharmaceutical statistics 2004;14(3):701-21.
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2004: Chang Jinhong; Nicolas Emmanuelle; Marks Debora; Sander Chris; Lerro Anthony; Buendia Marie Annick; Xu Chunxiao; Mason William S; Moloshok Thomas; Bort Roque; Zaret Kenneth S; Taylor John M
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1.
RNA biology 2004;1(2):106-13.
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2004: Pfeffer Sébastien; Zavolan Mihaela; Grässer Friedrich A; Chien Minchen; Russo James J; Ju Jingyue; John Bino; Enright Anton J; Marks Debora; Sander Chris; Tuschl Thomas
Identification of virus-encoded microRNAs.
Science (New York, N.Y.) 2004;304(5671):734-6.
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2004: Tong Amy Hin Yan; Lesage Guillaume; Bader Gary D; Ding Huiming; Xu Hong; Xin Xiaofeng; Young James; Berriz Gabriel F; Brost Renee L; Chang Michael; Chen YiQun; Cheng Xin; Chua Gordon; Friesen Helena; Goldberg Debra S; Haynes Jennifer; Humphries Christine; He Grace; Hussein Shamiza; Ke Lizhu; Krogan Nevan; Li Zhijian; Levinson Joshua N; Lu Hong; Ménard Patrice; Munyana Christella; Parsons Ainslie B; Ryan Owen; Tonikian Raffi; Roberts Tania; Sdicu Anne-Marie; Shapiro Jesse; Sheikh Bilal; Suter Bernhard; Wong Sharyl L; Zhang Lan V; Zhu Hongwei; Burd Christopher G; Munro Sean; Sander Chris; Rine Jasper; Greenblatt Jack; Peter Matthias; Bretscher Anthony; Bell Graham; Roth Frederick P; Brown Grant W; Andrews Brenda; Bussey Howard; Boone Charles
Global mapping of the yeast genetic interaction network.
Science (New York, N.Y.) 2004;303(5659):808-13.
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2004: Hermjakob Henning; Montecchi-Palazzi Luisa; Bader Gary; Wojcik Jérôme; Salwinski Lukasz; Ceol Arnaud; Moore Susan; Orchard Sandra; Sarkans Ugis; von Mering Christian; Roechert Bernd; Poux Sylvain; Jung Eva; Mersch Henning; Kersey Paul; Lappe Michael; Li Yixue; Zeng Rong; Rana Debashis; Nikolski Macha; Husi Holger; Brun Christine; Shanker K; Grant Seth G N; Sander Chris; Bork Peer; Zhu Weimin; Pandey Akhilesh; Brazma Alvis; Jacq Bernard; Vidal Marc; Sherman David; Legrain Pierre; Cesareni Gianni; Xenarios Ioannis; Eisenberg David; Steipe Boris; Hogue Chris; Apweiler Rolf
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Nature biotechnology 2004;22(2):177-83.
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2003: Berriz Gabriel F; King Oliver D; Bryant Barbara; Sander Chris; Roth Frederick P
Characterizing gene sets with FuncAssociate.
Bioinformatics (Oxford, England) 2003;19(18):2502-4.
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2003: Iliopoulos Ioannis; Tsoka Sophia; Andrade Miguel A; Enright Anton J; Carroll Mark; Poullet Patrick; Promponas Vassilis; Liakopoulos Theodore; Palaios Giorgos; Pasquier Claude; Hamodrakas Stavros; Tamames Javier; Yagnik Asutosh T; Tramontano Anna; Devos Damien; Blaschke Christian; Valencia Alfonso; Brett David; Martin David; Leroy Christophe; Rigoutsos Isidore; Sander Chris; Ouzounis Christos A
Evaluation of annotation strategies using an entire genome sequence.
Bioinformatics (Oxford, England) 2003;19(6):717-26.
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2003: Enright Anton J; John Bino; Gaul Ulrike; Tuschl Thomas; Sander Chris; Marks Debora S
MicroRNA targets in Drosophila.
Genome biology 2003;5(1):R1.
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2003: Vitkup Dennis; Sander Chris; Church George M
The amino-acid mutational spectrum of human genetic disease.
Genome biology 2003;4(11):R72.
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2001: Kresse H P; Czubayko M; Nyakatura G; Vriend G; Sander C; Bloecker H
Four-helix bundle topology re-engineered: monomeric Rop protein variants with different loop arrangements.
Protein engineering 2001;14(11):897-901.
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2001: Vitkup D; Melamud E; Moult J; Sander C
Completeness in structural genomics.
Nature structural biology 2001;8(6):559-66.
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2001: Iliopoulos I; Tsoka S; Andrade M A; Janssen P; Audit B; Tramontano A; Valencia A; Leroy C; Sander C; Ouzounis C A
Genome sequences and great expectations.
Genome biology 2001;2(1):INTERACTIONS0001.
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2000: Promponas V J; Enright A J; Tsoka S; Kreil D P; Leroy C; Hamodrakas S; Sander C; Ouzounis C A
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
Bioinformatics (Oxford, England) 2000;16(10):915-22.
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2000: Hoersch S; Leroy C; Brown N P; Andrade M A; Sander C
The GeneQuiz web server: protein functional analysis through the Web.
Trends in biochemical sciences 2000;25(1):33-5.
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2000: Rost B; Sander C
Third generation prediction of secondary structures.
Methods in molecular biology (Clifton, N.J.) 2000;143():71-95.
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1999: Andrade M A; Ouzounis C; Sander C; Tamames J; Valencia A
Functional classes in the three domains of life.
Journal of molecular evolution 1999;49(5):551-7.
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1999: Andrade M A; Brown N P; Leroy C; Hoersch S; de Daruvar A; Reich C; Franchini A; Tamames J; Valencia A; Ouzounis C; Sander C
Automated genome sequence analysis and annotation.
Bioinformatics (Oxford, England) 1999;15(5):391-412.
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1999: Holm L; Sander C
Protein folds and families: sequence and structure alignments.
Nucleic acids research 1999;27(1):244-7.
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1998: Holm L; Sander C
Dictionary of recurrent domains in protein structures.
Proteins 1998;33(1):88-96.
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1998: Holm L; Sander C
Removing near-neighbour redundancy from large protein sequence collections.
Bioinformatics (Oxford, England) 1998;14(5):423-9.
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1998: Andrade M A; Sander C; Valencia A
Updated catalogue of homologues to human disease-related proteins in the yeast genome.
FEBS letters 1998;426(1):7-16.
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1998: Holm L; Sander C
Touring protein fold space with Dali/FSSP.
Nucleic acids research 1998;26(1):316-9.
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1998: Dodge C; Schneider R; Sander C
The HSSP database of protein structure-sequence alignments and family profiles.
Nucleic acids research 1998;26(1):313-5.
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1998: Ouzounis C; Pérez-Irratxeta C; Sander C; Valencia A
Are binding residues conserved?
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():401-12.
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1998: Tamames J; Ouzounis C; Casari G; Sander C; Valencia A
EUCLID: automatic classification of proteins in functional classes by their database annotations.
Bioinformatics (Oxford, England) 1998;14(6):542-3.
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1998: Horn F; Bywater R; Krause G; Kuipers W; Oliveira L; Paiva A C; Sander C; Vriend G
The interaction of class B G protein-coupled receptors with their hormones.
Receptors & channels 1998;5(5):305-14.
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1998: Brown N P; Leroy C; Sander C
MView: a web-compatible database search or multiple alignment viewer.
Bioinformatics (Oxford, England) 1998;14(4):380-1.
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1998: Brown N P; Sander C; Bork P
Frame: detection of genomic sequencing errors.
Bioinformatics (Oxford, England) 1998;14(4):367-71.
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1997: Andrade M A; Sander C
Bioinformatics: from genome data to biological knowledge.
Current opinion in biotechnology 1997;8(6):675-83.
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1997: Andrade M A; Daruvar A; Casari G; Schneider R; Termier M; Sander C
Characterization of new proteins found by analysis of short open reading frames from the full yeast genome.
Yeast (Chichester, England) 1997;13(14):1363-74.
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1997: Andrade M; Casari G; de Daruvar A; Sander C; Schneider R; Tamames J; Valencia A; Ouzounis C
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
Computer applications in the biosciences : CABIOS 1997;13(4):481-3.
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1997: Hooft R W; Sander C; Vriend G
Objectively judging the quality of a protein structure from a Ramachandran plot.
Computer applications in the biosciences : CABIOS 1997;13(4):425-30.
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1997: Rost B; Schneider R; Sander C
Protein fold recognition by prediction-based threading.
Journal of molecular biology 1997;270(3):471-80.
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1997: Andrade M A; Casari G; Sander C; Valencia A
Classification of protein families and detection of the determinant residues with an improved self-organizing map.
Biological cybernetics 1997;76(6):441-50.
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1997: Voss H; Benes V; Andrade M A; Valencia A; Rechmann S; Teodoru C; Schwager C; Paces V; Sander C; Ansorge W
DNA sequencing and analysis of 130 kb from yeast chromosome XV.
Yeast (Chichester, England) 1997;13(7):655-72.
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1997: Holm L; Sander C
An evolutionary treasure: unification of a broad set of amidohydrolases related to urease.
Proteins 1997;28(1):72-82.
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1997: Holm L; Sander C
Enzyme HIT.
Trends in biochemical sciences 1997;22(4):116-7.
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1997: Holm L; Sander C
New structure--novel fold?
Structure (London, England : 1993) 1997;5(2):165-71.
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1997: Holm L; Sander C
Dali/FSSP classification of three-dimensional protein folds.
Nucleic acids research 1997;25(1):231-4.
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1997: Schneider R; de Daruvar A; Sander C
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1997;25(1):226-30.
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1997: Karplus K; Sjölander K; Barrett C; Cline M; Haussler D; Hughey R; Holm L; Sander C
Predicting protein structure using hidden Markov models.
Proteins 1997;Suppl 1():134-9.
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1997: Holm L; Sander C
Decision support system for the evolutionary classification of protein structures.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():140-6.
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1996: Hooft R W; Sander C; Scharf M; Vriend G
The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value.
Computer applications in the biosciences : CABIOS 1996;12(6):525-9.
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1996: Hooft R W; Sander C; Vriend G
Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures.
Proteins 1996;26(4):363-76.
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1996: Thomas D J; Casari G; Sander C
The prediction of protein contacts from multiple sequence alignments.
Protein engineering 1996;9(11):941-8.
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1996: Eide L G; Sander C; Prydz H
Sequencing and analysis of a 35.4 kb region on the right [corrected] arm of chromosome IV from Saccharomyces cerevisiae reveal 23 open reading frames.
Yeast (Chichester, England) 1996;12(10B Suppl):1085-90.
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1996: Ouzounis C; Casari G; Sander C; Tamames J; Valencia A
Computational comparisons of model genomes.
Trends in biotechnology 1996;14(8):280-5.
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1996: Holm L; Sander C
Mapping the protein universe.
Science (New York, N.Y.) 1996;273(5275):595-603.
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1996: Casari G; De Daruvar A; Sander C; Schneider R
Bioinformatics and the discovery of gene function.
Trends in genetics : TIG 1996;12(7):244-5.
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1996: Gray P M; Kemp G J; Rawlings C J; Brown N P; Sander C; Thornton J M; Orengo C M; Wodak S J; Richelle J
Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium.
Trends in biochemical sciences 1996;21(7):251-6.
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1996: Tamames J; Ouzounis C; Sander C; Valencia A
Genomes with distinct function composition.
FEBS letters 1996;389(1):96-101.
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1996: Ouzounis C; Casari G; Valencia A; Sander C
Novelties from the complete genome of Mycoplasma genitalium.
Molecular microbiology 1996;20(4):898-900.
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1996: Hooft R W; Vriend G; Sander C; Abola E E
Errors in protein structures.
Nature 1996;381(6580):272.
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1996: van Aalten D M; Amadei A; Bywater R; Findlay J B; Berendsen H J; Sander C; Stouten P F
A comparison of structural and dynamic properties of different simulation methods applied to SH3.
Biophysical journal 1996;70(2):684-92.
-
1996: Holm L; Sander C
The FSSP database: fold classification based on structure-structure alignment of proteins.
Nucleic acids research 1996;24(1):206-9.
-
1996: Schneider R; Sander C
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1996;24(1):201-5.
-
1996: Rost B; Sander C
Bridging the protein sequence-structure gap by structure predictions.
Annual review of biophysics and biomolecular structure 1996;25():113-36.
-
1996: Holm L; Sander C
Alignment of three-dimensional protein structures: network server for database searching.
Methods in enzymology 1996;266():653-62.
-
1995: Chinea G; Padron G; Hooft R W; Sander C; Vriend G
The use of position-specific rotamers in model building by homology.
Proteins 1995;23(3):415-21.
-
1995: Rost B; Sander C
Progress of 1D protein structure prediction at last.
Proteins 1995;23(3):295-300.
-
1995: Holm L; Sander C
Dali: a network tool for protein structure comparison.
Trends in biochemical sciences 1995;20(11):478-80.
-
1995: Ouzounis C; Bork P; Casari G; Sander C
New protein functions in yeast chromosome VIII.
Protein science : a publication of the Protein Society 1995;4(11):2424-8.
-
1995: Konstantopoulou I; Ouzounis C A; Drosopoulou E; Yiangou M; Sideras P; Sander C; Scouras Z G
A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci.
Journal of molecular evolution 1995;41(4):414-20.
-
1995: Holm L; Sander C
DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily.
Trends in biochemical sciences 1995;20(9):345-7.
-
1995: Casari G; Andrade M A; Bork P; Boyle J; Daruvar A; Ouzounis C; Schneider R; Tamames J; Valencia A; Sander C
Challenging times for bioinformatics.
Nature 1995;376(6542):647-8.
-
1995: Hobohm U; Sander C
A sequence property approach to searching protein databases.
Journal of molecular biology 1995;251(3):390-9.
-
1995: Bork P; Holm L; Koonin E V; Sander C
The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction.
Proteins 1995;22(3):259-66.
-
1995: Cronet P; Bellsolell L; Sander C; Coll M; Serrano L
Investigating the structural determinants of the p21-like triphosphate and Mg2+ binding site.
Journal of molecular biology 1995;249(3):654-64.
-
1995: Bork P; Ouzounis C; Casari G; Schneider R; Sander C; Dolan M; Gilbert W; Gillevet P M
Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology.
Molecular microbiology 1995;16(5):955-67.
-
1995: Holm L; Sander C
Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme.
The EMBO journal 1995;14(7):1287-93.
-
1995: Rost B; Casadio R; Fariselli P; Sander C
Transmembrane helices predicted at 95% accuracy.
Protein science : a publication of the Protein Society 1995;4(3):521-33.
-
1995: Ouzonis C; Kyrpides N; Sander C
Novel protein families in archaean genomes.
Nucleic acids research 1995;23(4):565-70.
-
1995: Casari G; Sander C; Valencia A
A method to predict functional residues in proteins.
Nature structural biology 1995;2(2):171-8.
-
1995: Voss H; Tamames J; Teodoru C; Valencia A; Sensen C; Wiemann S; Schwager C; Zimmermann J; Sander C; Ansorge W
Nucleotide sequence and analysis of the centromeric region of yeast chromosome IX.
Yeast (Chichester, England) 1995;11(1):61-78.
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1995: Holm L; Sander C
3-D lookup: fast protein structure database searches at 90% reliability.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():179-87.
-
1994: Holm L; Sander C; Rüterjans H; Schnarr M; Fogh R; Boelens R; Kaptein R
LexA repressor and iron uptake regulator from Escherichia coli: new members of the CAP-like DNA binding domain superfamily.
Protein engineering 1994;7(12):1449-53.
-
1994: Rost B; Sander C
Conservation and prediction of solvent accessibility in protein families.
Proteins 1994;20(3):216-26.
-
1994: Sánchez M; Valencia A; Ferrándiz M J; Sander C; Vicente M
Correlation between the structure and biochemical activities of FtsA, an essential cell division protein of the actin family.
The EMBO journal 1994;13(20):4919-25.
-
1994: Hobohm U; Houthaeve T; Sander C
Amino acid analysis and protein database compositional search as a rapid and inexpensive method to identify proteins.
Analytical biochemistry 1994;222(1):202-9.
-
1994: De Filippis V; Sander C; Vriend G
Predicting local structural changes that result from point mutations.
Protein engineering 1994;7(10):1203-8.
-
1994: Holm L; Sander C
The FSSP database of structurally aligned protein fold families.
Nucleic acids research 1994;22(17):3600-9.
-
1994: Sander C; Schneider R
The HSSP database of protein structure-sequence alignments.
Nucleic acids research 1994;22(17):3597-9.
-
1994: Bork P; Holm L; Sander C
The immunoglobulin fold. Structural classification, sequence patterns and common core.
Journal of molecular biology 1994;242(4):309-20.
-
1994: Rost B; Sander C
Structure prediction of proteins--where are we now?
Current opinion in biotechnology 1994;5(4):372-80.
-
1994: Burkhardt E; Adham I M; Hobohm U; Murphy D; Sander C; Engel W
A human cDNA coding for the Leydig insulin-like peptide (Ley I-L).
Human genetics 1994;94(1):91-4.
-
1994: Holm L; Sander C
Parser for protein folding units.
Proteins 1994;19(3):256-68.
-
1994: Holm L; Sander C
Searching protein structure databases has come of age.
Proteins 1994;19(3):165-73.
-
1994: Oliveira L; Paiva A C; Sander C; Vriend G
A common step for signal transduction in G protein-coupled receptors.
Trends in pharmacological sciences 1994;15(6):170-2.
-
1994: Koonin E V; Bork P; Sander C
A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
Nucleic acids research 1994;22(11):2166-7.
-
1994: Rost B; Sander C
Combining evolutionary information and neural networks to predict protein secondary structure.
Proteins 1994;19(1):55-72.
-
1994: Ouzounis C; Bork P; Sander C
The modular structure of NifU proteins.
Trends in biochemical sciences 1994;19(5):199-200.
-
1994: Sander C
Design of protein structures: helix bundles and beyond.
Trends in biotechnology 1994;12(5):163-7.
-
1994: Göbel U; Sander C; Schneider R; Valencia A
Correlated mutations and residue contacts in proteins.
Proteins 1994;18(4):309-17.
-
1994: Buchberger A; Valencia A; McMacken R; Sander C; Bukau B
The chaperone function of DnaK requires the coupling of ATPase activity with substrate binding through residue E171.
The EMBO journal 1994;13(7):1687-95.
-
1994: Shindyalov I N; Kolchanov N A; Sander C
Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
Protein engineering 1994;7(3):349-58.
-
1994: Hobohm U; Sander C
Enlarged representative set of protein structures.
Protein science : a publication of the Protein Society 1994;3(3):522-4.
-
1994: Holm L; Sander C; Murzin A
Three sisters, different names.
Nature structural biology 1994;1(3):146-7.
-
1994: Koonin E V; Bork P; Sander C
Yeast chromosome III: new gene functions.
The EMBO journal 1994;13(3):493-503.
-
1994: Rost B; Sander C; Schneider R
PHD--an automatic mail server for protein secondary structure prediction.
Computer applications in the biosciences : CABIOS 1994;10(1):53-60.
-
1994: Holm L; Sander C
Structural similarity of plant chitinase and lysozymes from animals and phage. An evolutionary connection.
FEBS letters 1994;340(1-2):129-32.
-
1994: Rost B; Sander C; Schneider R
Redefining the goals of protein secondary structure prediction.
Journal of molecular biology 1994;235(1):13-26.
-
1994: Vriend G; Sander C; Stouten P F
A novel search method for protein sequence--structure relations using property profiles.
Protein engineering 1994;7(1):23-9.
-
1994: Scharf M; Schneider R; Casari G; Bork P; Valencia A; Ouzounis C; Sander C
GeneQuiz: a workbench for sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():348-53.
-
1993: Meitinger T; Meindl A; Bork P; Rost B; Sander C; Haasemann M; Murken J
Molecular modelling of the Norrie disease protein predicts a cystine knot growth factor tertiary structure.
Nature genetics 1993;5(4):376-80.
-
1993: Rost B; Sander C
Secondary structure prediction of all-helical proteins in two states.
Protein engineering 1993;6(8):831-6.
-
1993: Hobohm U; Sander C
Does the HIV Nef protein mimic the MHC?
FEBS letters 1993;333(3):211-3.
-
1993: Bork P; Sander C
A hybrid protein kinase-RNase in an interferon-induced pathway?
FEBS letters 1993;334(2):149-52.
-
1993: Holm L; Sander C
Protein structure comparison by alignment of distance matrices.
Journal of molecular biology 1993;233(1):123-38.
-
1993: Rost B; Sander C
Improved prediction of protein secondary structure by use of sequence profiles and neural networks.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(16):7558-62.
-
1993: Ouzounis C; Sander C; Scharf M; Schneider R
Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
Journal of molecular biology 1993;232(3):805-25.
-
1993: Rost B; Sander C
Prediction of protein secondary structure at better than 70% accuracy.
Journal of molecular biology 1993;232(2):584-99.
-
1993: Sander C; Schneider R
The HSSP data base of protein structure-sequence alignments.
Nucleic acids research 1993;21(13):3105-9.
-
1993: Ouzounis C; Sander C
Homology of the NifS family of proteins to a new class of pyridoxal phosphate-dependent enzymes.
FEBS letters 1993;322(2):159-64.
-
1993: Rost B; Schneider R; Sander C
Progress in protein structure prediction?
Trends in biochemical sciences 1993;18(4):120-3.
-
1993: Kolstø A B; Bork P; Kvaløy K; Lindback T; Grønstadt A; Kristensen T; Sander C
Prokaryotic members of a new family of putative helicases with similarity to transcription activator SNF2.
Journal of molecular biology 1993;230(2):684-8.
-
1993: Stouten P F; Sander C; Wittinghofer A; Valencia A
How does the switch II region of G-domains work?
FEBS letters 1993;320(1):1-6.
-
1993: Holm L; Sander C
Globin fold in a bacterial toxin.
Nature 1993;361(6410):309.
-
1993: Holm L; Sander C
Structural alignment of globins, phycocyanins and colicin A.
FEBS letters 1993;315(3):301-6.
-
1993: Bork P; Sander C; Valencia A
Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases.
Protein science : a publication of the Protein Society 1993;2(1):31-40.
-
1993: Cronet P; Sander C; Vriend G
Modeling of transmembrane seven helix bundles.
Protein engineering 1993;6(1):59-64.
-
1992: Lehmann L E; Eberle W; Krull S; Prill V; Schmidt B; Sander C; von Figura K; Peters C
The internalization signal in the cytoplasmic tail of lysosomal acid phosphatase consists of the hexapeptide PGYRHV.
The EMBO journal 1992;11(12):4391-9.
-
1992: Holm L; Ouzounis C; Sander C; Tuparev G; Vriend G
A database of protein structure families with common folding motifs.
Protein science : a publication of the Protein Society 1992;1(12):1691-8.
-
1992: Bork P; Ouzounis C; Sander C; Scharf M; Schneider R; Sonnhammer E
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.
Protein science : a publication of the Protein Society 1992;1(12):1677-90.
-
1992: Rost B; Sander C
Jury returns on structure prediction.
Nature 1992;360(6404):540.
-
1992: Ouzounis C; Sander C
TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes.
Cell 1992;71(2):189-90.
-
1992: Holm L; Sander C
Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology.
Proteins 1992;14(2):213-23.
-
1992: Stouten P F; Sander C; Ruigrok R W; Cusack S
New triple-helical model for the shaft of the adenovirus fibre.
Journal of molecular biology 1992;226(4):1073-84.
-
1992: Bork P; Sander C; Valencia A
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(16):7290-4.
-
1992: Bork P; Ouzounis C; Sander C; Scharf M; Schneider R; Sonnhammer E
What's in a genome?
Nature 1992;358(6384):287.
-
1992: Holm L; Sander C
Evaluation of protein models by atomic solvation preference.
Journal of molecular biology 1992;225(1):93-105.
-
1992: Bork P; Sander C; Valencia A; Bukau B
A module of the DnaJ heat shock proteins found in malaria parasites.
Trends in biochemical sciences 1992;17(4):129.
-
1992: Bork P; Sander C
A large domain common to sperm receptors (Zp2 and Zp3) and TGF-beta type III receptor.
FEBS letters 1992;300(3):237-40.
-
1992: Tuparev G; Vriend G; Sander C
GCI: a network server for interactive 3D graphics.
Journal of molecular graphics 1992;10(1):12-6.
-
1992: Hobohm U; Scharf M; Schneider R; Sander C
Selection of representative protein data sets.
Protein science : a publication of the Protein Society 1992;1(3):409-17.
-
1992: Sander C; Vriend G; Bazan F; Horovitz A; Nakamura H; Ribas L; Finkelstein A V; Lockhart A; Merkl R; Perry L J
Protein design on computers. Five new proteins: Shpilka, Grendel, Fingerclasp, Leather, and Aida.
Proteins 1992;12(2):105-10.
-
1992: Palme K; Diefenthal T; Vingron M; Sander C; Schell J
Molecular cloning and structural analysis of genes from Zea mays (L.) coding for members of the ras-related ypt gene family.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(2):787-91.
-
1991: Janknecht R; Sander C; Pongs O
(HX)n repeats: a pH-controlled protein-protein interaction motif of eukaryotic transcription factors?
FEBS letters 1991;295(1-3):1-2.
-
1991: Eberle W; Sander C; Klaus W; Schmidt B; von Figura K; Peters C
The essential tyrosine of the internalization signal in lysosomal acid phosphatase is part of a beta turn.
Cell 1991;67(6):1203-9.
-
1991: Hubbard T J; Sander C
The role of heat-shock and chaperone proteins in protein folding: possible molecular mechanisms.
Protein engineering 1991;4(7):711-7.
-
1991: Valencia A; Kjeldgaard M; Pai E F; Sander C
GTPase domains of ras p21 oncogene protein and elongation factor Tu: analysis of three-dimensional structures, sequence families, and functional sites.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(12):5443-7.
-
1991: Grandori R; Sander C
Identification by computer sequence analysis of transcriptional regulator proteins in Dictyostelium discoideum and Serratia marcescens.
Nucleic acids research 1991;19(9):2359-62.
-
1991: Valencia A; Chardin P; Wittinghofer A; Sander C
The ras protein family: evolutionary tree and role of conserved amino acids.
Biochemistry 1991;30(19):4637-48.
-
1991: Eberle W; Pastore A; Sander C; Rösch P
The structure of ColE1 rop in solution.
Journal of biomolecular NMR 1991;1(1):71-82.
-
1991: Holm L; Sander C
Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.
Journal of molecular biology 1991;218(1):183-94.
-
1991: Ouzounis C; Sander C
A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins.
FEBS letters 1991;279(1):73-8.
-
1991: Sander C; Schneider R
Database of homology-derived protein structures and the structural meaning of sequence alignment.
Proteins 1991;9(1):56-68.
-
1991: Vriend G; Sander C
Detection of common three-dimensional substructures in proteins.
Proteins 1991;11(1):52-8.
-
1990: Chavrier P; Vingron M; Sander C; Simons K; Zerial M
Molecular cloning of YPT1/SEC4-related cDNAs from an epithelial cell line.
Molecular and cellular biology 1990;10(12):6578-85.
-
1990: Eberle W; Klaus W; Cesareni G; Sander C; Rösch P
Proton nuclear magnetic resonance assignments and secondary structure determination of the ColE1 rop (rom) protein.
Biochemistry 1990;29(32):7402-7.
-
1990: Colonna-Cesari F; Sander C
Excluded volume approximation to protein-solvent interaction. The solvent contact model.
Biophysical journal 1990;57(5):1103-7.
-
1990: Sander C
Inverting the protein-folding problem.
Biochemical Society symposium 1990;57():25-33.
-
1989: Godzik A; Sander C
Conservation of residue interactions in a family of Ca-binding proteins.
Protein engineering 1989;2(8):589-96.
-
1989: Frömmel C; Sander C
Thermitase, a thermostable subtilisin: comparison of predicted and experimental structures and the molecular cause of thermostability.
Proteins 1989;5(1):22-37.
-
1985: Kabsch W; Sander C
Identical pentapeptides with different backbones.
Nature 1985;317(6034):207.
-
1985: Brown R S; Sander C; Argos P
The primary structure of transcription factor TFIIIA has 12 consecutive repeats.
FEBS letters 1985;186(2):271-4.
-
1985: Levitt M; Sander C; Stern P S
Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme.
Journal of molecular biology 1985;181(3):423-47.
-
1984: Kabsch W; Sander C
On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(4):1075-8.
-
1983: Kabsch W; Sander C
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
Biopolymers 1983;22(12):2577-637.
-
1983: Kabsch W; Sander C
How good are predictions of protein secondary structure?
FEBS letters 1983;155(2):179-82.
-
1981: Hol W G; Halie L M; Sander C
Dipoles of the alpha-helix and beta-sheet: their role in protein folding.
Nature 1981;294(5841):532-6.
-
1980: Lifson S; Sander C
Specific recognition in the tertiary structure of beta-sheets of proteins.
Journal of molecular biology 1980;139(4):627-39.
-
1979: Lifson S; Sander C
Antiparallel and parallel beta-strands differ in amino acid residue preferences.
Nature 1979;282(5734):109-11.
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