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Ruud Scheek

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Kathleen Wood; Klaas Dijkstra; Renee Otten; Aviv Paz; Ruud M Scheek; Israel Silman; Joel L Sussman; Frans A A Mulder
Backbone and side chain NMR assignments for the intrinsically disordered cytoplasmic domain of human neuroligin-3.
Nur Alia Oktaviani; Trijntje J Pool; Ruud M Scheek; Jelle Slager; Hironari Kamikubo; Mikio Kataoka; Frans A A Mulder
Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy.
Frans A A Mulder; Renee Otten; Ruud M Scheek
Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra.

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2012: Kathleen Wood; Klaas Dijkstra; Renee Otten; Aviv Paz; Ruud M Scheek; Israel Silman; Joel L Sussman; Frans A A Mulder
Backbone and side chain NMR assignments for the intrinsically disordered cytoplasmic domain of human neuroligin-3.
Biomolecular NMR assignments 2012;6(1):15-8.
2012: Nur Alia Oktaviani; Trijntje J Pool; Ruud M Scheek; Jelle Slager; Hironari Kamikubo; Mikio Kataoka; Frans A A Mulder
Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy.
Biophysical journal 2012;102(3):579-86.
2011: Frans A A Mulder; Renee Otten; Ruud M Scheek
Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra.
Journal of biomolecular NMR 2011;51(1-2):199-207.
2011: Nur Alia Oktaviani; Renee Otten; Klaas Dijkstra; Ruud M Scheek; Eva Thulin; Mikael Akke; Frans A A Mulder
100% complete assignment of non-labile (1)H, (13)C, and (15)N signals for calcium-loaded Calbindin D(9k) P43G.
Biomolecular NMR assignments 2011;5(1):79-84.
2005: Pieter-Jan Haas; Carla J C de Haas; Miriam J J G Poppelier; Kok P M van Kessel; Jos van Strijp; Klaas Dijkstra; Ruud M Scheek; Hao Fan; John A W Kruijtzer; Rob M J Liskamp; Johan Kemmink
The structure of the C5a receptor-blocking domain of chemotaxis inhibitory protein of Staphylococcus aureus is related to a group of immune evasive molecules.
Journal of molecular biology 2005;353(4):859-72.
2005: Gertjan Veldhuis; Jaap Broos; Bert Poolman; Ruud M Scheek
Stoichiometry and substrate affinity of the mannitol transporter, EnzymeIImtl, from Escherichia coli.
Biophysical journal 2005;89(1):201-10.
2004: Renee Otten; Franciska S van Lune; Klaas Dijkstra; Ruud M Scheek
1H, 13C, and 15N resonance assignments of the phosphorylated enzyme IIB of the mannitol-specific phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli.
Journal of biomolecular NMR 2004;30(4):461-2.
2004: Richard D Brokx; Ruud M Scheek; Aalim M Weljie; Hans J Vogel
Backbone dynamic properties of the central linker region of calcium-calmodulin in 35% trifluoroethanol.
Journal of structural biology 2004;146(3):272-80.
2004: Gertjan Veldhuis; Erwin P P Vos; Jaap Broos; Bert Poolman; Ruud M Scheek
Evaluation of the flow-dialysis technique for analysis of protein-ligand interactions: an experimental and a monte carlo study.
Biophysical journal 2004;86(4):1959-68.
2003: B Hess; Ruud M Scheek
Orientation restraints in molecular dynamics simulations using time and ensemble averaging.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2003;164(1):19-27.
2003: Denis Canet; Charles E Lyon; Ruud M Scheek; George T Robillard; Christopher M Dobson; Peter J Hore; Nico A J van Nuland
Rapid formation of non-native contacts during the folding of HPr revealed by real-time photo-CIDNP NMR and stopped-flow fluorescence experiments.
Journal of molecular biology 2003;330(2):397-407.
2003: Ana I Azuaga; Denis Canet; Gerard Smeenk; Roel Berends; Fritz Titgemeijer; Ria H Duurkens; Pedro L Mateo; Ruud M Scheek; George T Robillard; Christopher M Dobson; Nico A J van Nuland
Characterization of single-tryptophan mutants of histidine-containing phosphocarrier protein: evidence for local rearrangements during folding from high concentrations of denaturant.
Biochemistry 2003;42(17):4883-95.
2002: Adriaan van Kooij; Jeena Middel; Jakab Ferenc; Peter Elfferich; Danny G A M Koedijk; Matty Feijlbrief; Albert Jan Scheffer; John E Degener; T Hauw The; Ruud M Scheek; Gjalt W Welling; Sytske Welling-Wester
High level expression and secretion of truncated forms of herpes simplex virus type 1 and type 2 glycoprotein D by the methylotrophic yeast Pichia pastoris.
Protein expression and purification 2002;25(3):400-8.
2002: K Anton Feenstra; Christine Peter; Ruud M Scheek; Wilfred F van Gunsteren; Alan E Mark
A comparison of methods for calculating NMR cross-relaxation rates (NOESY and ROESY intensities) in small peptides.
Journal of biomolecular NMR 2002;23(3):181-94.
2002: Franciska van Lune; Linda Manning; Klaas Dijkstra; Herman J C Berendsen; Ruud M Scheek
Order-parameter tensor description of HPr in a medium of oriented bicelles.
Journal of biomolecular NMR 2002;23(3):169-79.
2002: Benoît Odaert; Isabelle Landrieu; Klaas Dijkstra; Gea K Schuurman-Wolters; Peter Casteels; Jean-Michel Wieruszeski; Ruud M Scheek; Guy Lippens
Assignment of the 1H, 13C and 15N resonances and secondary structure of the monomeric p13suc1 protein of Saccharomyces pombe.
Journal of biomolecular NMR 2002;23(2):155-6.
2002: Benoît Odaert; Isabelle Landrieu; Klaas Dijkstra; Gea K Schuurman-Wolters; Peter Casteels; Jean-Michel Wieruszeski; Dirk Inze; Ruud M Scheek; Guy Lippens
Solution NMR study of the monomeric form of p13suc1 protein sheds light on the hinge region determining the affinity for a phosphorylated substrate.
The Journal of biological chemistry 2002;277(14):12375-81.
2001: E Ab; Gea K Schuurman-Wolters; D Nijlant; Klaas Dijkstra; MH Saier; George T Robillard; Ruud M Scheek
NMR structure of cysteinyl-phosphorylated enzyme IIB of the N,N'-diacetylchitobiose-specific phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli.
Journal of molecular biology 2001;308(5):993-1009.
1999: Klaas Dijkstra; P Karvonen; Annamari Pirneskoski; Peppi Koivunen; Kari I Kivirikko; NJ Darby; M van Straaten; Ruud M Scheek; Johan Kemmink
Assignment of 1H, 13C and 15N resonances of the a' domain of protein disulfide isomerase.
Journal of biomolecular NMR 1999;14(2):195-6.
1999: Johan Kemmink; Klaas Dijkstra; M Mariani; Ruud M Scheek; E Penka; Michael Nilges; NJ Darby
The structure in solution of the b domain of protein disulfide isomerase.
Journal of biomolecular NMR 1999;13(4):357-68.
1999: Thomas Kernebeck; S Pflanz; Gerhard Müller-Newen; G Kurapkat; Ruud M Scheek; Klaas Dijkstra; Peter C Heinrich; Axel Wollmer; S Grzesiek; Joachim Grötzinger
The signal transducer gp130: solution structure of the carboxy-terminal domain of the cytokine receptor homology region.
Protein science : a publication of the Protein Society 1999;8(1):5-12.
1998: Wim Meijberg; Gea K Schuurman-Wolters; harry boer; Ruud M Scheek; George T Robillard
The thermal stability and domain interactions of the mannitol permease of Escherichia coli. A differential scanning calorimetry study.
The Journal of biological chemistry 1998;273(33):20785-94.
1998: Nico A J van Nuland; Wim Meijberg; J Warner; V Forge; Ruud M Scheek; George T Robillard; Christopher M Dobson
Slow cooperative folding of a small globular protein HPr.
Biochemistry 1998;37(2):622-37.
1997: BL de Groot; Daan M F van Aalten; Ruud M Scheek; Andrea Amadei; G Vriend; Herman J C Berendsen
Prediction of protein conformational freedom from distance constraints.
Proteins 1997;29(2):240-51.
1997: E Ab; Gea K Schuurman-Wolters; J Reizer; MH Saier; Klaas Dijkstra; Ruud M Scheek; George T Robillard
The NMR side-chain assignments and solution structure of enzyme IIBcellobiose of the phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli.
Protein science : a publication of the Protein Society 1997;6(2):304-14.
1996: BL de Groot; Andrea Amadei; Ruud M Scheek; Nico A J van Nuland; Herman J C Berendsen
An extended sampling of the configurational space of HPr from E. coli.
Proteins 1996;26(3):314-22.
1996: Nico A J van Nuland; J A Wiersma; D Van Der Spoel; BL de Groot; Ruud M Scheek; George T Robillard
Phosphorylation-induced torsion-angle strain in the active center of HPr, detected by NMR and restrained molecular dynamics refinement.
Protein science : a publication of the Protein Society 1996;5(3):442-6.
1995: Johan Kemmink; NJ Darby; Klaas Dijkstra; Ruud M Scheek; T E Creighton
Nuclear magnetic resonance characterization of the N-terminal thioredoxin-like domain of protein disulfide isomerase.
Protein science : a publication of the Protein Society 1995;4(12):2587-93.
1995: Ruud M Scheek; Nico A J van Nuland; B L de Groot; A Amadei
Structure from NMR and molecular dynamics: Distance restraining inhibits motion in the essential subspace.
Journal of biomolecular NMR 1995;6(1):106-11.
1995: Johan Kemmink; Ruud M Scheek
Dynamic modelling of a helical peptide in solution using NMR data: multiple conformations and multi-spin effects.
Journal of biomolecular NMR 1995;6(1):33-40.
1995: Nico A J van Nuland; R Boelens; Ruud M Scheek; George T Robillard
High-resolution structure of the phosphorylated form of the histidine-containing phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from NMR-NOE data.
Journal of molecular biology 1995;246(1):180-93.
1994: Nico A J van Nuland; I W Hangyi; R C van Schaik; Herman J C Berendsen; Wilfred F van Gunsteren; Ruud M Scheek; George T Robillard
The high-resolution structure of the histidine-containing phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from nuclear magnetic resonance nuclear Overhauser effect data.
Journal of molecular biology 1994;237(5):544-59.
1994: E Ab; Gea K Schuurman-Wolters; MH Saier; J Reizer; Michel Jaquinod; P Roepstorff; Klaas Dijkstra; Ruud M Scheek; George T Robillard
Enzyme IIBcellobiose of the phosphoenol-pyruvate-dependent phosphotransferase system of Escherichia coli: backbone assignment and secondary structure determined by three-dimensional NMR spectroscopy.
Protein science : a publication of the Protein Society 1994;3(2):282-90.
1993: G J Kroon; Joachim Grötzinger; Klaas Dijkstra; Ruud M Scheek; George T Robillard
Backbone assignments and secondary structure of the Escherichia coli enzyme-II mannitol A domain determined by heteronuclear three-dimensional NMR spectroscopy.
Protein science : a publication of the Protein Society 1993;2(8):1331-41.
1993: Johan Kemmink; C P van Mierlo; Ruud M Scheek; T E Creighton
Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor.
Journal of molecular biology 1993;230(1):312-22.
1993: Nico A J van Nuland; G J Kroon; Klaas Dijkstra; G K Wolters; Ruud M Scheek; George T Robillard
The NMR determination of the IIA(mtl) binding site on HPr of the Escherichia coli phosphoenol pyruvate-dependent phosphotransferase system.
FEBS letters 1993;315(1):11-5.
1992: Nico A J van Nuland; Joachim Grötzinger; Klaas Dijkstra; Ruud M Scheek; George T Robillard
Determination of the three-dimensional solution structure of the histidine-containing phosphocarrier protein HPr from Escherichia coli using multidimensional NMR spectroscopy.
European journal of biochemistry / FEBS 1992;210(3):881-91.
1992: A A Van Dijk; Ruud M Scheek; Klaas Dijkstra; G K Wolters; George T Robillard
Characterization of the protonation and hydrogen bonding state of the histidine residues in IIAmtl, a domain of the phosphoenolpyruvate-dependent mannitol-specific transport protein.
Biochemistry 1992;31(37):9063-72.
1992: Nico A J van Nuland; A A van Dijk; Klaas Dijkstra; F H van Hoesel; Ruud M Scheek; George T Robillard
Three-dimensional 15N-1H-1H and 15N-13C-1H nuclear-magnetic resonance studies of HPr a central component of the phosphoenolpyruvate-dependent phosphotransferase system from Escherichia coli. Assignment of backbone resonances.
European journal of biochemistry / FEBS 1992;203(3):483-91.
1990: Andrew E Torda; Ruud M Scheek; Wilfred F van Gunsteren
Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat.
Journal of molecular biology 1990;214(1):223-35.
1988: S Stob; Ruud M Scheek; R Boelens; R Kaptein
Photo-CIDNP study of the interaction between lac repressor headpiece and lac operator DNA.
FEBS letters 1988;239(1):99-104.
1988: J de Vlieg; Ruud M Scheek; Wilfred F van Gunsteren; Herman J C Berendsen; R Kaptein; J Thomason
Combined procedure of distance geometry and restrained molecular dynamics techniques for protein structure determination from nuclear magnetic resonance data: application to the DNA binding domain of lac repressor from Escherichia coli.
Proteins 1988;3(4):209-18.
1985: R Boelens; P Gros; Ruud M Scheek; J A Verpoorte; R Kaptein
Hydrogen exchange of individual amide protons in the E. coli lac repressor DNA-binding domain: a nuclear magnetic resonance study.
Journal of biomolecular structure & dynamics 1985;3(2):269-80.
1985: C Redfield; Christopher M Dobson; Ruud M Scheek; S Stob; R Kaptein
Surface accessibility of aromatic residues in human lysozyme using photochemically induced dynamic nuclear polarization NMR spectroscopy.
FEBS letters 1985;185(2):248-52.