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Christophe Schilling

Research Profile

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Publications

TOP 3
Carla Risso; Jun Sun; Kai Zhuang; Radhakrishnan Mahadevan; Robert DeBoy; Wael Ismail; Susmita Shrivastava; Heather Huot; Sagar Kothari; Sean Daugherty; Olivia Bui; Christophe H Schilling; Derek R Lovley; Barbara A Methé
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.
Jun Sun; Bahareh Sayyar; Jessica E Butler; Priti Pharkya; Tom R Fahland; Iman Famili; Christophe H Schilling; Derek R Lovley; Radhakrishnan Mahadevan
Genome-scale constraint-based modeling of Geobacter metallireducens.
You-Kwan Oh; Bernhard Ø Palsson; Sung M Park; Christophe H Schilling; Radhakrishnan Mahadevan
Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

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All Publications

2009: Carla Risso; Jun Sun; Kai Zhuang; Radhakrishnan Mahadevan; Robert DeBoy; Wael Ismail; Susmita Shrivastava; Heather Huot; Sagar Kothari; Sean Daugherty; Olivia Bui; Christophe H Schilling; Derek R Lovley; Barbara A Methé
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.
BMC genomics 2009;10():447.
2009: Jun Sun; Bahareh Sayyar; Jessica E Butler; Priti Pharkya; Tom R Fahland; Iman Famili; Christophe H Schilling; Derek R Lovley; Radhakrishnan Mahadevan
Genome-scale constraint-based modeling of Geobacter metallireducens.
BMC systems biology 2009;3():15.
2007: You-Kwan Oh; Bernhard Ø Palsson; Sung M Park; Christophe H Schilling; Radhakrishnan Mahadevan
Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.
The Journal of biological chemistry 2007;282(39):28791-9.
2006: John D Trawick; Christophe H Schilling
Use of constraint-based modeling for the prediction and validation of antimicrobial targets.
Biochemical pharmacology 2006;71(7):1026-35.
2006: Radhakrishnan Mahadevan; D R Bond; J E Butler; A Esteve-Nuñez; M V Coppi; Bernhard Ø Palsson; Christophe H Schilling; D R Lovley
Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.
Applied and environmental microbiology 2006;72(2):1558-68.
2006: Steve Van Dien; Christophe H Schilling
Bringing metabolomics data into the forefront of systems biology.
Molecular systems biology 2006;2():2006.0035.
2005: Graciela L Lorca; Yong Joon Chung; Ravi D Barabote; Walter Weyler; Christophe H Schilling; Milton H Saier
Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr, and HprK.
Journal of bacteriology 2005;187(22):7826-39.
2004: Anthony P Burgard; Evgeni V Nikolaev; Christophe H Schilling; Costas D Maranas
Flux coupling analysis of genome-scale metabolic network reconstructions.
Genome research 2004;14(2):301-12.
2003: Radhakrishnan Mahadevan; Christophe H Schilling
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models.
Metabolic engineering 2003;5(4):264-76.
2003: Nathan Price; Jason A Papin; Christophe H Schilling; Bernhard Ø Palsson
Genome-scale microbial in silico models: the constraints-based approach.
Trends in biotechnology 2003;21(4):162-9.
2003: Jennifer L Reed; Thuy D Vo; Christophe H Schilling; Bernhard Ø Palsson
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).
Genome biology 2003;4(9):R54.
2002: Christophe H Schilling; Markus W Covert; Iman Famili; George M Church; Jeremy S Edwards; Bernhard Ø Palsson
Genome-scale metabolic model of Helicobacter pylori 26695.
Journal of bacteriology 2002;184(16):4582-93.
2001: Markus W Covert; Christophe H Schilling; Bernhard Ø Palsson
Regulation of gene expression in flux balance models of metabolism.
Journal of theoretical biology 2001;213(1):73-88.
2001: Markus W Covert; Christophe H Schilling; Iman Famili; Jeremy S Edwards; Igor Goryanin; E Selkov; Bernhard Ø Palsson
Metabolic modeling of microbial strains in silico.
Trends in biochemical sciences 2001;26(3):179-86.
2000: Christophe H Schilling; L Held; M Torre; Milton H Saier
GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs.
Journal of molecular microbiology and biotechnology 2000;2(4):495-500.
2000: Christophe H Schilling; Bernhard Ø Palsson
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis.
Journal of theoretical biology 2000;203(3):249-83.
2000: Christophe H Schilling; D Letscher; Bernhard Ø Palsson
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective.
Journal of theoretical biology 2000;203(3):229-48.
2000: Christophe H Schilling; Jeremy S Edwards; D Letscher; Bernhard Ø Palsson
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems.
Biotechnology and bioengineering 2000;71(4):286-306.
1999: Christophe H Schilling; S Schuster; Bernhard Ø Palsson; R Heinrich
Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.
Biotechnology progress 1999;15(3):296-303.
1999: Christophe H Schilling; Jeremy S Edwards; Bernhard Ø Palsson
Toward metabolic phenomics: analysis of genomic data using flux balances.
Biotechnology progress 1999;15(3):288-95.
1998: Christophe H Schilling; Bernhard Ø Palsson
The underlying pathway structure of biochemical reaction networks.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(8):4193-8.