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Patrick Schnable

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Oligonucleotide Array Sequence Analysis

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TOP 3
Scanlon Michael J; Ohtsu Kazuhiro; Timmermans Marja C P; Schnable Patrick S
Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA.
Brooks Lionel; Strable Josh; Zhang Xiaolan; Ohtsu Kazuhiro; Zhou Ruilian; Sarkar Ananda; Hargreaves Sarah; Elshire Robert J; Eudy Douglas; Pawlowska Teresa; Ware Doreen; Janick-Buckner Diane; Buckner Brent; Timmermans Marja C P; Schnable Patrick S; Nettleton Dan; Scanlon Michael J
Microdissection of shoot meristem functional domains.
Shimizu Rena; Ji Jiabing; Kelsey Eric; Ohtsu Kazuhiro; Schnable Patrick S; Scanlon Michael J
Tissue specificity and evolution of meristematic WOX3 function.

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All Publications

2009: Scanlon Michael J; Ohtsu Kazuhiro; Timmermans Marja C P; Schnable Patrick S
Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2009;Chapter 25():Unit 25A.3.
2009: Brooks Lionel; Strable Josh; Zhang Xiaolan; Ohtsu Kazuhiro; Zhou Ruilian; Sarkar Ananda; Hargreaves Sarah; Elshire Robert J; Eudy Douglas; Pawlowska Teresa; Ware Doreen; Janick-Buckner Diane; Buckner Brent; Timmermans Marja C P; Schnable Patrick S; Nettleton Dan; Scanlon Michael J
Microdissection of shoot meristem functional domains.
PLoS genetics 2009;5(5):e1000476.
2009: Shimizu Rena; Ji Jiabing; Kelsey Eric; Ohtsu Kazuhiro; Schnable Patrick S; Scanlon Michael J
Tissue specificity and evolution of meristematic WOX3 function.
Plant physiology 2009;149(2):841-50.
2009: Nogueira Fabio T S; Chitwood Daniel H; Madi Shahinez; Ohtsu Kazuhiro; Schnable Patrick S; Scanlon Michael J; Timmermans Marja C P
Regulation of small RNA accumulation in the maize shoot apex.
PLoS genetics 2009;5(1):e1000320.
2009: Chou Hui-Hsien; Trisiriroj Arunee; Park Sunyoung; Hsing Yue-Ie C; Ronald Pamela C; Schnable Patrick S
Direct calibration of PICKY-designed microarrays.
BMC bioinformatics 2009;10():347.
2009: Wei Yanling; Lin Ming; Oliver David J; Schnable Patrick S
The roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of Arabidopsis.
BMC biochemistry 2009;10():7.
2009: Jackson Benjamin G; Schnable Patrick S; Aluru Srinivas
Parallel short sequence assembly of transcriptomes.
BMC bioinformatics 2009;10 Suppl 1():S14.
2008: Strable Josh; Borsuk Lisa; Nettleton Dan; Schnable Patrick S; Irish Erin E
Microarray analysis of vegetative phase change in maize.
The Plant journal : for cell and molecular biology 2008;56(6):1045-57.
2008: Skibbe David S; Wang Xiujuan; Borsuk Lisa A; Ashlock Daniel A; Nettleton Dan; Schnable Patrick S
Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death.
Journal of genetics and genomics = Yi chuan xue bao 2008;35(10):603-16.
2008: Buckner Brent; Swaggart Kayleigh A; Wong Cheryl C; Smith Heath A; Aurand Kelsey M; Scanlon Michael J; Schnable Patrick S; Janick-Buckner Diane
Expression and nucleotide diversity of the maize RIK gene.
The Journal of heredity 2008;99(4):407-16.
2008: Hochholdinger Frank; Wen Tsui-Jung; Zimmermann Roman; Chimot-Marolle Patricia; da Costa e Silva Oswaldo; Bruce Wesley; Lamkey Kendall R; Wienand Udo; Schnable Patrick S
The maize (Zea mays L.) roothairless 3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield.
The Plant journal : for cell and molecular biology 2008;54(5):888-98.
2008: Jackson Benjamin N; Schnable Patrick S; Aluru Srinivas
Consensus genetic maps as median orders from inconsistent sources.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2008;5(2):161-71.
2008: Li Jin; Wen Tsui-Jung; Schnable Patrick S
Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.).
Genetics 2008;178(1):57-66.
2008: Jung Ki-Hong; Dardick Christopher; Bartley Laura E; Cao Peijian; Phetsom Jirapa; Canlas Patrick; Seo Young-Su; Shultz Michael; Ouyang Shu; Yuan Qiaoping; Frank Bryan C; Ly Eugene; Zheng Li; Jia Yi; Hsia An-Ping; An Kyungsook; Chou Hui-Hsien; Rocke David; Lee Geun Cheol; Schnable Patrick S; An Gynheung; Buell C Robin; Ronald Pamela C
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.
PloS one 2008;3(10):e3337.
2008: Lu Ruixiao; Lee Geun-Cheol; Shultz Michael; Dardick Chris; Jung Kihong; Phetsom Jirapa; Jia Yi; Rice Robert H; Goldberg Zelanna; Schnable Patrick S; Ronald Pamela; Rocke David M
Assessing probe-specific dye and slide biases in two-color microarray data.
BMC bioinformatics 2008;9():314.
2007: Dembinsky Diana; Woll Katrin; Saleem Muhammad; Liu Yan; Fu Yan; Borsuk Lisa A; Lamkemeyer Tobias; Fladerer Claudia; Madlung Johannes; Barbazuk Brad; Nordheim Alfred; Nettleton Dan; Schnable Patrick S; Hochholdinger Frank
Transcriptomic and proteomic analyses of pericycle cells of the maize primary root.
Plant physiology 2007;145(3):575-88.
2007: Ohtsu Kazuhiro; Smith Marianne B; Emrich Scott J; Borsuk Lisa A; Zhou Ruilian; Chen Tianle; Zhang Xiaolan; Timmermans Marja C P; Beck Jon; Buckner Brent; Janick-Buckner Diane; Nettleton Dan; Scanlon Michael J; Schnable Patrick S
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).
The Plant journal : for cell and molecular biology 2007;52(3):391-404.
2007: Barbazuk W Brad; Emrich Scott J; Chen Hsin D; Li Li; Schnable Patrick S
SNP discovery via 454 transcriptome sequencing.
The Plant journal : for cell and molecular biology 2007;51(5):910-8.
2007: Li Jin; Harper Lisa C; Golubovskaya Inna; Wang C Rachel; Weber David; Meeley Robert B; McElver John; Bowen Ben; Cande W Zacheus; Schnable Patrick S
Functional analysis of maize RAD51 in meiosis and double-strand break repair.
Genetics 2007;176(3):1469-82.
2007: Zhang Xiaolan; Madi Shahinez; Borsuk Lisa; Nettleton Dan; Elshire Robert J; Buckner Brent; Janick-Buckner Diane; Beck Jon; Timmermans Marja; Schnable Patrick S; Scanlon Michael J
Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem.
PLoS genetics 2007;3(6):e101.
2007: Buckner Brent; Beck Jon; Browning Kate; Fritz Ashleigh; Grantham Lisa; Hoxha Eneda; Kamvar Zhian; Lough Ashley; Nikolova Olga; Schnable Patrick S; Scanlon Michael J; Janick-Buckner Diane
Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database.
Genetics 2007;176(2):741-7.
2007: Li Jin; Hsia An-Ping; Schnable Patrick S
Recent advances in plant recombination.
Current opinion in plant biology 2007;10(2):131-5.
2007: Ohtsu Kazuhiro; Takahashi Hirokazu; Schnable Patrick S; Nakazono Mikio
Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies.
Plant & cell physiology 2007;48(1):3-7.
2007: Emrich Scott J; Li Li; Wen Tsui-Jung; Yandeau-Nelson Marna D; Fu Yan; Guo Ling; Chou Hui-Hsien; Aluru Srinivas; Ashlock Daniel A; Schnable Patrick S
Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution.
Genetics 2007;175(1):429-39.
2007: Emrich Scott J; Barbazuk W Brad; Li Li; Schnable Patrick S
Gene discovery and annotation using LCM-454 transcriptome sequencing.
Genome research 2007;17(1):69-73.
2006: Fu Yan; Wen Tsui-Jung; Ronin Yefim I; Chen Hsin D; Guo Ling; Mester David I; Yang Yongjie; Lee Michael; Korol Abraham B; Ashlock Daniel A; Schnable Patrick S
Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize.
Genetics 2006;174(3):1671-83.
2006: Yandeau-Nelson Marna D; Nikolau Basil J; Schnable Patrick S
Effects of trans-acting genetic modifiers on meiotic recombination across the a1-sh2 interval of maize.
Genetics 2006;174(1):101-12.
2006: Yandeau-Nelson Marna D; Xia Yiji; Li Jin; Neuffer M Gerald; Schnable Patrick S
Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize.
Genetics 2006;173(4):2211-26.
2006: Skibbe David S; Wang Xiujuan; Zhao Xuefeng; Borsuk Lisa A; Nettleton Dan; Schnable Patrick S
Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes.
Bioinformatics (Oxford, England) 2006;22(15):1863-70.
2006: Maher Philip M; Chou Hui-Hsien; Hahn Elizabeth; Wen Tsui-Jung; Schnable Patrick S
GRAMA: genetic mapping analysis of temperature gradient capillary electrophoresis data.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;113(1):156-62.
2006: Swanson-Wagner Ruth A; Jia Yi; DeCook Rhonda; Borsuk Lisa A; Nettleton Dan; Schnable Patrick S
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(18):6805-10.
2006: Kalyanaraman A; Aluru S; Schnable P S
Turning repeats to advantage: scaffolding genomic contigs using LTR retrotransposons.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2006;():167-78.
2005: Hochholdinger Frank; Woll Katrin; Guo Ling; Schnable Patrick S
The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.).
Proteomics 2005;5(18):4885-93.
2005: Woll Katrin; Borsuk Lisa A; Stransky Harald; Nettleton Dan; Schnable Patrick S; Hochholdinger Frank
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.
Plant physiology 2005;139(3):1255-67.
2005: Fu Yan; Emrich Scott J; Guo Ling; Wen Tsui-Jung; Ashlock Daniel A; Aluru Srinivas; Schnable Patrick S
Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(34):12282-7.
2005: Yao Hong; Schnable Patrick S
Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background.
Genetics 2005;170(4):1929-44.
2005: Wen Tsui-Jung; Hochholdinger Frank; Sauer Michaela; Bruce Wesley; Schnable Patrick S
The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis.
Plant physiology 2005;138(3):1637-43.
2005: Hsia An-Ping; Wen Tsui-Jung; Chen Hsin D; Liu Zhaowei; Yandeau-Nelson Marna D; Wei Yanling; Guo Ling; Schnable Patrick S
Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(2):218-25.
2005: Dietrich Charles R; Perera M Ann D N; D Yandeau-Nelson Marna; Meeley Robert B; Nikolau Basil J; Schnable Patrick S
Characterization of two GL8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development.
The Plant journal : for cell and molecular biology 2005;42(6):844-61.
2005: Ding J; Viswanathan K; Berleant D; Hughes L; Wurtele E S; Ashlock D; Dickerson J A; Fulmer A; Schnable P S
Using the biological taxonomy to access biological literature with PathBinderH.
Bioinformatics (Oxford, England) 2005;21(10):2560-2.
2005: Yao Hong; Guo Ling; Fu Yan; Borsuk Lisa A; Wen Tsui-Jung; Skibbe David S; Cui Xiangqin; Scheffler Brian E; Cao Jun; Emrich Scott J; Ashlock Daniel A; Schnable Patrick S
Evaluation of five ab initio gene prediction programs for the discovery of maize genes.
Plant molecular biology 2005;57(3):445-60.
2005: Yandeau-Nelson Marna D; Zhou Qing; Yao Hong; Xu Xiaojie; Nikolau Basil J; Schnable Patrick S
MuDR transposase increases the frequency of meiotic crossovers in the vicinity of a Mu insertion in the maize a1 gene.
Genetics 2005;169(2):917-29.
2005: Jackson Benjamin N; Aluru Srinivas; Schnable Patrick S
Consensus genetic maps: a graph theoretic approach.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():35-43.
2004: Chou Hui-Hsien; Hsia An-Ping; Mooney Denise L; Schnable Patrick S
Picky: oligo microarray design for large genomes.
Bioinformatics (Oxford, England) 2004;20(17):2893-902.
2004: Hochholdinger Frank; Guo Ling; Schnable Patrick S
Lateral roots affect the proteome of the primary root of maize (Zea mays L.).
Plant molecular biology 2004;56(3):397-412.
2004: Kirch Hans-Hubert; Bartels Dorothea; Wei Yanling; Schnable Patrick S; Wood Andrew J
The ALDH gene superfamily of Arabidopsis.
Trends in plant science 2004;9(8):371-7.
2004: Fu Yan; Hsia An-Ping; Guo Ling; Schnable Patrick S
Types and frequencies of sequencing errors in methyl-filtered and high c0t maize genome survey sequences.
Plant physiology 2004;135(4):2040-5.
2004: da Costa e Silva Oswaldo; Lorbiecke René; Garg Preeti; Müller Lenard; Wassmann Martina; Lauert Patricia; Scanlon Mike; Hsia An-Ping; Schnable Patrick S; Krupinska Karin; Wienand Udo
The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS.
The Plant journal : for cell and molecular biology 2004;38(6):923-39.
2004: Schnable Patrick S; Hochholdinger Frank; Nakazono Mikio
Global expression profiling applied to plant development.
Current opinion in plant biology 2004;7(1):50-6.
2004: Emrich Scott J; Aluru Srinivas; Fu Yan; Wen Tsui-Jung; Narayanan Mahesh; Guo Ling; Ashlock Daniel A; Schnable Patrick S
A strategy for assembling the maize (Zea mays L.) genome.
Bioinformatics (Oxford, England) 2004;20(2):140-7.
2004: Hochholdinger Frank; Guo Ling; Schnable Patrick S
Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize.
The Plant journal : for cell and molecular biology 2004;37(2):199-208.
2003: Qiu Fang; Guo Ling; Wen Tsui-Jung; Liu Feng; Ashlock Daniel A; Schnable Patrick S
DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources.
Plant physiology 2003;133(2):475-81.
2003: Nakazono Mikio; Qiu Fang; Borsuk Lisa A; Schnable Patrick S
Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize.
The Plant cell 2003;15(3):583-96.
2003: Cui Xiangqin; Hsia An-Ping; Liu Feng; Ashlock Daniel A; Wise Roger P; Schnable Patrick S
Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize.
Genetics 2003;163(2):685-98.
2002: Liu Feng; Schnable Patrick S
Functional specialization of maize mitochondrial aldehyde dehydrogenases.
Plant physiology 2002;130(4):1657-74.
2002: Yao Hong; Zhou Qing; Li Jin; Smith Heather; Yandeau Marna; Nikolau Basil J; Schnable Patrick S
Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):6157-62.
2002: Skibbe David S; Liu Feng; Wen Tsui-Jung; Yandeau Marna D; Cui Xiangqin; Cao Jun; Simmons Carl R; Schnable Patrick S
Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis.
Plant molecular biology 2002;48(5-6):751-64.
2002: Xu Xiaojie; Dietrich Charles R; Lessire Rene; Nikolau Basil J; Schnable Patrick S
The Endoplasmic reticulum-associated maize GL8 protein is a component of the acyl-coenzyme A elongase ivolved in the production of cuticular waxes.
Plant physiology 2002;128(3):924-34.
2002: Dietrich Charles R; Cui Feng; Packila Mark L; Li Jin; Ashlock Daniel A; Nikolau Basil J; Schnable Patrick S
Maize Mu transposons are targeted to the 5' untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome.
Genetics 2002;160(2):697-716.
2001: Liu F; Cui X; Horner H T; Weiner H; Schnable P S
Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize.
The Plant cell 2001;13(5):1063-78.
2000: Nikolau B J; Oliver D J; Schnable P S; Wurtele E S
Molecular biology of acetyl-CoA metabolism.
Biochemical Society transactions 2000;28(6):591-3.
1999: Wise R P; Gobelman-Werner K; Pei D; Dill C L; Schnable P S
Mitochondrial transcript processing and restoration of male fertility in T-cytoplasm maize.
The Journal of heredity 1999;90(3):380-5.
1998: Schnable P S; Hsia A P; Nikolau B J
Genetic recombination in plants.
Current opinion in plant biology 1998;1(2):123-9.
1997: Xia Y; Nikolau B J; Schnable P S
Developmental and hormonal regulation of the arabidopsis CER2 gene that codes for a nuclear-localized protein required for the normal accumulation of cuticular waxes.
Plant physiology 1997;115(3):925-37.
1997: Dill C L; Wise R P; Schnable P S
Rf8 and Rf* mediate unique T-urf13-transcript accumulation, revealing a conserved motif associated with RNA processing and restoration of pollen fertility in T-cytoplasm maize.
Genetics 1997;147(3):1367-79.
1997: Xu X; Dietrich C R; Delledonne M; Xia Y; Wen T J; Robertson D S; Nikolau B J; Schnable P S
Sequence analysis of the cloned glossy8 gene of maize suggests that it may code for a beta-ketoacyl reductase required for the biosynthesis of cuticular waxes.
Plant physiology 1997;115(2):501-10.
1997: Hansen J D; Pyee J; Xia Y; Wen T J; Robertson D S; Kolattukudy P E; Nikolau B J; Schnable P S
The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes.
Plant physiology 1997;113(4):1091-100.
1996: Xia Y; Nikolau B J; Schnable P S
Cloning and characterization of CER2, an Arabidopsis gene that affects cuticular wax accumulation.
The Plant cell 1996;8(8):1291-304.
1996: Wise R P; Dill C L; Schnable P S
Mutator-induced mutations of the rf1 nuclear fertility restorer of T-cytoplasm maize alter the accumulation of T-urf13 mitochondrial transcripts.
Genetics 1996;143(3):1383-94.
1996: Cui X; Wise R P; Schnable P S
The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize.
Science (New York, N.Y.) 1996;272(5266):1334-6.
1996: Hsia A P; Schnable P S
DNA sequence analyses support the role of interrupted gap repair in the origin of internal deletions of the maize transposon, MuDR.
Genetics 1996;142(2):603-18.
1995: Xu X; Hsia A P; Zhang L; Nikolau B J; Schnable P S
Meiotic recombination break points resolve at high rates at the 5' end of a maize coding sequence.
The Plant cell 1995;7(12):2151-61.
1994: Civardi L; Xia Y; Edwards K J; Schnable P S; Nikolau B J
The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(17):8268-72.
1994: Schnable P S; Wise R P
Recovery of heritable, transposon-induced, mutant alleles of the rf 2 nuclear restorer of T-cytoplasm maize.
Genetics 1994;136(3):1171-85.

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Patrick Schnable

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