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Mathieu Blanchette

Research Profile

Genes & Molecular Sequences

Concepts & Ideas

Occupations

Chemicals & Drugs

Physiology

Transcription, Genetic

Phenomena

Evolution, Molecular

Activities & Behaviors

Procedures

Sequence Analysis, DNA

Living Beings

Mouse

Co-author Network

Publications

TOP 3
Mathieu Lavallée-Adam; Justine Rousseau; Mathieu Blanchette; Annie Bouchard; Céline Domecq; Denis Faubert; Diane Forget; Benoit Coulombe
Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry.
Charles Meunier; Maya Saleh; Claire Turbide; Lauren Van Der Kraak; Garabet Yeretssian; Nicole Beauchemin; Mathieu Blanchette; Pablo Cingolani; Normand Groulx; Ingrid Labouba; Anne-Marie Mes-Masson; Philippe Gros
Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer.
Philippe Cloutier; Denis Faubert; Mathieu Lavallée-Adam; Mathieu Blanchette; Benoit Coulombe
A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity.

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All Publications

2013: Mathieu Lavallée-Adam; Justine Rousseau; Mathieu Blanchette; Annie Bouchard; Céline Domecq; Denis Faubert; Diane Forget; Benoit Coulombe
Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry.
Journal of proteome research 2013;12(1):272-81.
2013: Charles Meunier; Maya Saleh; Claire Turbide; Lauren Van Der Kraak; Garabet Yeretssian; Nicole Beauchemin; Mathieu Blanchette; Pablo Cingolani; Normand Groulx; Ingrid Labouba; Anne-Marie Mes-Masson; Philippe Gros
Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer.
PloS one 2013;8(3):e58733.
2013: Philippe Cloutier; Denis Faubert; Mathieu Lavallée-Adam; Mathieu Blanchette; Benoit Coulombe
A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity.
PLoS genetics 2013;9(1):e1003210.
2012: Yves Gagnon; Mathieu Blanchette; Nadia El-Mabrouk
A flexible ancestral genome reconstruction method based on gapped adjacencies.
BMC bioinformatics 2012;13 Suppl 19():S4.
2012: Mathieu Blanchette
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites.
BMC bioinformatics 2012;13 Suppl 19():S2.
2012: Alexander Kawrykow; Daniel Kwak; Clarence Leung; Gary Roumanis; Luis Sarmenta; Mathieu Blanchette; Alfred Kam; Chu Wu; Eleyine Zarour; Jérôme Waldispühl
Phylo: a citizen science approach for improving multiple sequence alignment.
PloS one 2012;7(3):e31362.
2012: Silayuv E Bongfen; Pablo Cingolani; Marcel A Behr; Joanne Berghout; Mathieu Blanchette; Samantha Gruenheid; Mark Lathrop; Gabriel A Leiva-Torres; Louis Letourneau; Ian-Gael Rodrigue-Gervais; Maya Saleh; Robert Sladek; Sabrina Torre; Silvia M Vidal; Sean A Wiltshire; Philippe Gros
An N-ethyl-N-nitrosourea (ENU)-induced dominant negative mutation in the JAK3 kinase protects against cerebral malaria.
PloS one 2012;7(2):e31012.
2011: Emmanuel Mongin; Ken Dewar; Mathieu Blanchette
Mapping association between long-range cis-regulatory regions and their target genes using synteny.
Journal of computational biology : a journal of computational molecular cell biology 2011;18(9):1115-30.
2011: Javad Sadri; Abdoulaye Banire Diallo; Mathieu Blanchette
Predicting site-specific human selective pressure using evolutionary signatures.
Bioinformatics (Oxford, England) 2011;27(13):i266-74.
2011: Glenn Hickey; Mathieu Blanchette; Paz Carmi; Anil Maheshwari; Norbert Zeh
An approximation algorithm for the Noah's Ark problem with random feature loss.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2011;8(2):551-6.
2011: Mathieu Lavallée-Adam; Philippe Cloutier; Benoit Coulombe; Mathieu Blanchette
Modeling contaminants in AP-MS/MS experiments.
Journal of proteome research 2011;10(2):886-95.
2011: Mathieu Rousseau; Josée Dostie; Maria A Ferraiuolo; James Fraser; Mathieu Blanchette
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.
BMC bioinformatics 2011;12():414.
2011: Emmanuel Mongin; Thomas O Auer; Franck Bourrat; Franziska Gruhl; Ken Dewar; Mathieu Blanchette; Joachim Wittbrodt; Laurence Ettwiller
Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish.
PloS one 2011;6(5):e19747.
2011: Mathieu Blanchette; David Fortin
Blood-brain barrier disruption in the treatment of brain tumors.
Methods in molecular biology (Clifton, N.J.) 2011;686():447-63.
2010: Diane Forget; Andrée-Anne Lacombe; Philippe Cloutier; Racha Al-Khoury; Annie Bouchard; Mathieu Lavallée-Adam; Denis Faubert; Célia Jeronimo; Mathieu Blanchette; Benoit Coulombe
The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II.
Molecular & cellular proteomics : MCP 2010;9(12):2827-39.
2010: Maria A Ferraiuolo; Mathieu Rousseau; Carol Miyamoto; Solomon Shenker; Xue Qing David Wang; Michelle Nadler; Mathieu Blanchette; Josée Dostie
The three-dimensional architecture of Hox cluster silencing.
Nucleic acids research 2010;38(21):7472-84.
2010: Mathieu Lavallée-Adam; Benoit Coulombe; Mathieu Blanchette
Detection of locally over-represented GO terms in protein-protein interaction networks.
Journal of computational biology : a journal of computational molecular cell biology 2010;17(3):443-57.
2010: Ethan Dh Kim; Ashish Sabharwal; Adrian R Vetta; Mathieu Blanchette
Predicting direct protein interactions from affinity purification mass spectrometry data.
Algorithms for molecular biology : AMB 2010;5():34.
2010: James Fraser; Mathieu Rousseau; Mathieu Blanchette; Josée Dostie
Computing chromosome conformation.
Methods in molecular biology (Clifton, N.J.) 2010;674():251-68.
2010: James R Wagner; Bing Ge; Dmitry Pokholok; Kevin L Gunderson; Tomi Pastinen; Mathieu Blanchette
Computational analysis of whole-genome differential allelic expression data in human.
PLoS computational biology 2010;6(7):e1000849.
2010: Glenn Hickey; Mathieu Blanchette
A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2010;():31-42.
2009: Bing Ge; Dmitry K Pokholok; Tony Kwan; Elin Grundberg; Lisanne Morcos; Dominique J Verlaan; Jennie Le; Vonda Koka; Kevin C L Lam; Vincent Gagné; Joana Dias; Rose Hoberman; Alexandre Montpetit; Marie-Michele Joly; Edward Harvey; Daniel Sinnett; Patrick Beaulieu; Robert Hamon; Alexandru Graziani; Ken Dewar; Eef Harmsen; Jacek Majewski; Harald HH Goring; Anna K Naumova; Mathieu Blanchette; Kevin L Gunderson; Tomi Pastinen
Global patterns of cis variation in human cells revealed by high-density allelic expression analysis.
Nature genetics 2009;41(11):1216-22.
2009: Rose Hoberman; Joana Dias; Bing Ge; Eef Harmsen; Michael Mayhew; Dominique J Verlaan; Tony Kwan; Ken Dewar; Mathieu Blanchette; Tomi Pastinen
A probabilistic approach for SNP discovery in high-throughput human resequencing data.
Genome research 2009;19(9):1542-52.
2009: Emmanuel Mongin; Ken Dewar; Mathieu Blanchette
Long-range regulation is a major driving force in maintaining genome integrity.
BMC evolutionary biology 2009;9():203.
2009: James Fraser; Mathieu Rousseau; Solomon Shenker; Maria A Ferraiuolo; Yoshihide Hayashizaki; Mathieu Blanchette; Josée Dostie
Chromatin conformation signatures of cellular differentiation.
Genome biology 2009;10(4):R37.
2007: Célia Jeronimo; Diane Forget; Annie Bouchard; Qintong Li; Gordon Chua; Christian Poitras; Cynthia Thérien; Dominique Bergeron; Sylvie Bourassa; Jack Greenblatt; Benoit Chabot; Guy G Poirier; Timothy R Hughes; Mathieu Blanchette; David H Price; Benoit Coulombe
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.
Molecular cell 2007;27(2):262-74.
2007: Abdoulaye Banire Diallo; Vladimir Makarenkov; Mathieu Blanchette
Exact and heuristic algorithms for the Indel Maximum Likelihood Problem.
Journal of computational biology : a journal of computational molecular cell biology 2007;14(4):446-61.
2007: Guillaume Blin; Eric Blais; Danny Hermelin; Pierre Guillon; Mathieu Blanchette; Nadia El-Mabrouk
Gene maps linearization using genomic rearrangement distances.
Journal of computational biology : a journal of computational molecular cell biology 2007;14(4):394-407.
2007: Catherine Dufour; Brian Wilson; Janice M Huss; Daniel P Kelly; William Alaynick; Michael Downes; Ronald M Evans; Mathieu Blanchette; Vincent Giguère
Genome-wide orchestration of cardiac functions by the orphan nuclear receptors ERRalpha and gamma.
Cell metabolism 2007;5(5):345-56.
2007: Mathieu Blanchette
Computation and analysis of genomic multi-sequence alignments.
Annual review of genomics and human genetics 2007;8():193-213.
2007: Hui Chen; Mathieu Blanchette
Detecting non-coding selective pressure in coding regions.
BMC evolutionary biology 2007;7 Suppl 1():S9.
2007: Vincent Ferretti; Christian Poitras; Dominique Bergeron; Benoit Coulombe; François Robert; Mathieu Blanchette
PReMod: a database of genome-wide mammalian cis-regulatory module predictions.
Nucleic acids research 2007;35(Database issue):D122-6.
2006: Leonid Chindelevitch; Zhentao Li; Eric Blais; Mathieu Blanchette
On the inference of parsimonious indel evolutionary scenarios.
Journal of bioinformatics and computational biology 2006;4(3):721-44.
2006: Mathieu Blanchette; Alain R Bataille; Xiaoyu Chen; Christian Poitras; Josée Laganière; Céline Lefèbvre; Geneviève Deblois; Vincent Giguère; Vincent Ferretti; Dominique Bergeron; Benoit Coulombe; François Robert
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression.
Genome research 2006;16(5):656-68.
2005: Benoît Guillemette; Alain R Bataille; Nicolas Y Gévry; Maryse Adam; Mathieu Blanchette; François Robert; Luc Gaudreau
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning.
PLoS biology 2005;3(12):e384.
2005: Matthew R Warr; Stephane Acoca; Zhiqian Liu; Marc Germain; Mark Watson; Mathieu Blanchette; Simon S Wing; Gordon C Shore
BH3-ligand regulates access of MCL-1 to its E3 ligase.
FEBS letters 2005;579(25):5603-8.
2004: Qian Yang; Mathieu Blanchette
StructMiner: a tool for alignment and detection of conserved secondary structure.
Genome informatics. International Conference on Genome Informatics 2004;15(2):102-11.
2002: Stephen Hutchison; Catherine LeBel; Mathieu Blanchette; Benoit Chabot
Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor.
The Journal of biological chemistry 2002;277(33):29745-52.
2002: François Robert; Mathieu Blanchette; Olivier Maes; Benoit Chabot; Benoit Coulombe
A human RNA polymerase II-containing complex associated with factors necessary for spliceosome assembly.
The Journal of biological chemistry 2002;277(11):9302-6.
2001: L Bolduc; B Labrecque; Mélanie Cordeau; Mathieu Blanchette; Benoit Chabot
Dimethyl sulfoxide affects the selection of splice sites.
The Journal of biological chemistry 2001;276(20):17597-602.
1999: Mathieu Blanchette; Benoit Chabot
Modulation of exon skipping by high-affinity hnRNP A1-binding sites and by intron elements that repress splice site utilization.
The EMBO journal 1999;18(7):1939-52.
1997: Benoit Chabot; Mathieu Blanchette; I Lapierre; H La Branche
An intron element modulating 5' splice site selection in the hnRNP A1 pre-mRNA interacts with hnRNP A1.
Molecular and cellular biology 1997;17(4):1776-86.
1997: Mathieu Blanchette; Benoit Chabot
A highly stable duplex structure sequesters the 5' splice site region of hnRNP A1 alternative exon 7B.
RNA (New York, N.Y.) 1997;3(4):405-19.