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Nadrian Seeman
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20
Kallenbach, Neville
15
Sha, Ruojie
7
Liu, Furong
7
Lu, Min
5
Constantinou, Pamela
5
Wang, Tong
4
Liao, Shiping
4
Canary, James
4
Mao, Chengde
4
Sherman, William
4
Tullius, TD
4
Vologodskii, Alexander
3
Wang, Hong
3
Birktoft, Jens
3
Ding, Baoquan
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All Publications
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2009: Wu Gang; Jonoska Natasha; Seeman Nadrian C
Construction of a DNA nano-object directly demonstrates computation.
Bio Systems 2009;98(2):80-4.
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2009: Zheng Jianping; Birktoft Jens J; Chen Yi; Wang Tong; Sha Ruojie; Constantinou Pamela E; Ginell Stephan L; Mao Chengde; Seeman Nadrian C
From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.
Nature 2009;461(7260):74-7.
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2009: Wang Risheng; Liu Wenyan; Seeman Nadrian C
Prototyping nanorod control: A DNA double helix sheathed within a DNA six-helix bundle.
Chemistry & biology 2009;16(8):862-7.
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2009: Spink Charles H; Ding Liang; Yang Qingyi; Sheardy Richard D; Seeman Nadrian C
Thermodynamics of forming a parallel DNA crossover.
Biophysical journal 2009;97(2):528-38.
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2009: Leunissen Mirjam E; Dreyfus Rémi; Cheong Fook Chiong; Grier David G; Sha Roujie; Seeman Nadrian C; Chaikin Paul M
Switchable self-protected attractions in DNA-functionalized colloids.
Nature materials 2009;8(7):590-5.
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2009: Liu Chunhua; Jonoska Natasha; Seeman Nadrian C
Reciprocal DNA nanomechanical devices controlled by the same set strands.
Nano letters 2009;9(7):2641-7.
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2009: Gu Hongzhou; Chao Jie; Xiao Shou-Jun; Seeman Nadrian C
Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate.
Nature nanotechnology 2009;4(4):245-8.
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2009: Omabegho Tosan; Sha Ruojie; Seeman Nadrian C
A bipedal DNA Brownian motor with coordinated legs.
Science (New York, N.Y.) 2009;324(5923):67-71.
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2009: Dreyfus Rémi; Leunissen Mirjam E; Sha Roujie; Tkachenko Alexei V; Seeman Nadrian C; Pine David J; Chaikin Paul M
Simple quantitative model for the reversible association of DNA coated colloids.
Physical review letters 2009;102(4):048301.
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2008: Lin Chenxiang; Rinker Sherri; Wang Xing; Liu Yan; Seeman Nadrian C; Yan Hao
In vivo cloning of artificial DNA nanostructures.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(46):17626-31.
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2008: Chakraborty Banani; Sha Ruojie; Seeman Nadrian C
A DNA-based nanomechanical device with three robust states.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(45):17245-9.
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2008: Zheng Jiwen; Lukeman Philip S; Sherman William B; Micheel Christine; Alivisatos A Paul; Constantinou Pamela E; Seeman Nadrian C
Metallic nanoparticles used to estimate the structural integrity of DNA motifs.
Biophysical journal 2008;95(7):3340-8.
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2008: Liu Yu; Kuzuya Akinori; Sha Ruojie; Guillaume Johan; Wang Risheng; Canary James W; Seeman Nadrian C
Coupling across a DNA helical turn yields a hybrid DNA/organic catenane doubly tailed with functional termini.
Journal of the American Chemical Society 2008;130(33):10882-3.
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2008: Lin Jianping; Seeman Nadrian C; Vaidehi Nagarajan
Molecular-dynamics simulations of insertion of chemically modified DNA nanostructures into a water-chloroform interface.
Biophysical journal 2008;95(3):1099-107.
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2008: Liu Yu; Wang Risheng; Ding Liang; Sha Ruojie; Lukeman Philip S; Canary James W; Seeman Nadrian C
Thermodynamic analysis of nylon nucleic acids.
Chembiochem : a European journal of chemical biology 2008;9(10):1641-8.
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2008: Liu Wenyan; Wang Xing; Wang Tong; Sha Ruojie; Seeman Nadrian C
PX DNA triangle oligomerized using a novel three-domain motif.
Nano letters 2008;8(1):317-22.
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2007: Lin Chenxiang; Wang Xing; Liu Yan; Seeman Nadrian C; Yan Hao
Rolling circle enzymatic replication of a complex multi-crossover DNA nanostructure.
Journal of the American Chemical Society 2007;129(46):14475-81.
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2007: Seeman Nadrian C
An overview of structural DNA nanotechnology.
Molecular biotechnology 2007;37(3):246-57.
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2007: Wang Xing; Seeman Nadrian C
Assembly and characterization of 8-arm and 12-arm DNA branched junctions.
Journal of the American Chemical Society 2007;129(26):8169-76.
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2007: Kuzuya Akinori; Wang Risheng; Sha Ruojie; Seeman Nadrian C
Six-helix and eight-helix DNA nanotubes assembled from half-tubes.
Nano letters 2007;7(6):1757-63.
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2007: Garibotti Alejandra V; Liao Shiping; Seeman Nadrian C
A simple DNA-based translation system.
Nano letters 2007;7(2):480-3.
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2006: Zhong Hong; Seeman Nadrian C
RNA used to control a DNA rotary nanomachine.
Nano letters 2006;6(12):2899-903.
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2006: Ding Baoquan; Seeman Nadrian C
Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.
Science (New York, N.Y.) 2006;314(5805):1583-5.
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2006: Birac Jeffrey J; Sherman William B; Kopatsch Jens; Constantinou Pamela E; Seeman Nadrian C
Architecture with GIDEON, a program for design in structural DNA nanotechnology.
Journal of molecular graphics & modelling 2006;25(4):470-80.
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2006: Constantinou Pamela E; Wang Tong; Kopatsch Jens; Israel Lisa B; Zhang Xiaoping; Ding Baoquan; Sherman William B; Wang Xing; Zheng Jianping; Sha Ruojie; Seeman Nadrian C
Double cohesion in structural DNA nanotechnology.
Organic & biomolecular chemistry 2006;4(18):3414-9.
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2006: Garibotti Alejandra V; Knudsen Scott M; Ellington Andrew D; Seeman Nadrian C
Functional DNAzymes organized into two-dimensional arrays.
Nano letters 2006;6(7):1505-7.
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2006: Zheng Jiwen; Constantinou Pamela E; Micheel Christine; Alivisatos A Paul; Kiehl Richard A; Seeman Nadrian C
Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs.
Nano letters 2006;6(7):1502-4.
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2006: Sherman William B; Seeman Nadrian C
Design of minimally strained nucleic Acid nanotubes.
Biophysical journal 2006;90(12):4546-57.
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2005: Pinto Yariv Y; Le John D; Seeman Nadrian C; Musier-Forsyth Karin; Taton T Andrew; Kiehl Richard A
Sequence-encoded self-assembly of multiple-nanocomponent arrays by 2D DNA scaffolding.
Nano letters 2005;5(12):2399-402.
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2005: Seeman Nadrian C
DNA enables nanoscale control of the structure of matter.
Quarterly reviews of biophysics 2005;38(4):363-71.
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2005: Endo Masayuki; Seeman Nadrian C; Majima Tetsuro
DNA tube structures controlled by a four-way-branched DNA connector.
Angewandte Chemie (International ed. in English) 2005;44(37):6074-7.
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2005: Mathieu Frederick; Liao Shiping; Kopatsch Jens; Wang Tong; Mao Chengde; Seeman Nadrian C
Six-helix bundles designed from DNA.
Nano letters 2005;5(4):661-5.
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2005: Seeman Nadrian C
From genes to machines: DNA nanomechanical devices.
Trends in biochemical sciences 2005;30(3):119-25.
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2005: Seeman Nadrian C
Structural DNA nanotechnology: an overview.
Methods in molecular biology (Clifton, N.J.) 2005;303():143-66.
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2004: Liao Shiping; Seeman Nadrian C
Translation of DNA signals into polymer assembly instructions.
Science (New York, N.Y.) 2004;306(5704):2072-4.
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2004: Shen Wanqiu; Bruist Michael F; Goodman Steven D; Seeman Nadrian C
A protein-driven DNA device that measures the excess binding energy of proteins that distort DNA.
Angewandte Chemie (International ed. in English) 2004;43(36):4750-2.
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2004: Paukstelis Paul J; Nowakowski Jacek; Birktoft Jens J; Seeman Nadrian C
Crystal structure of a continuous three-dimensional DNA lattice.
Chemistry & biology 2004;11(8):1119-26.
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2004: Ding Baoquan; Sha Ruojie; Seeman Nadrian C
Pseudohexagonal 2D DNA crystals from double crossover cohesion.
Journal of the American Chemical Society 2004;126(33):10230-1.
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2004: Lukeman Philip S; Mittal Alexander C; Seeman Nadrian C
Two dimensional PNA/DNA arrays: estimating the helicity of unusual nucleic acid polymers.
Chemical communications (Cambridge, England) 2004;(15):1694-5.
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2004: Seeman Nadrian C
Nanotechnology and the double helix.
Scientific American 2004;290(6):64-9, 72-5.
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2004: Sa-Ardyen Phiset; Jonoska Natasha; Seeman Nadrian C
Self-assembly of irregular graphs whose edges are DNA helix axes.
Journal of the American Chemical Society 2004;126(21):6648-57.
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2004: Shen Zhiyong; Yan Hao; Wang Tong; Seeman Nadrian C
Paranemic crossover DNA: a generalized Holliday structure with applications in nanotechnology.
Journal of the American Chemical Society 2004;126(6):1666-74.
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2004: Liao Shiping; Mao Chengde; Birktoft Jens J; Shuman Stewart; Seeman Nadrian C
Resolution of undistorted symmetric immobile DNA junctions by vaccinia topoisomerase I.
Biochemistry 2004;43(6):1520-31.
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2003: Seeman Nadrian C
At the crossroads of chemistry, biology, and materials: structural DNA nanotechnology.
Chemistry & biology 2003;10(12):1151-9.
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2003: Zhu Lei; Lukeman Philip S; Canary James W; Seeman Nadrian C
Nylon/DNA: Single-stranded DNA with a covalently stitched nylon lining.
Journal of the American Chemical Society 2003;125(34):10178-9.
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2003: Seeman Nadrian C
Biochemistry and structural DNA nanotechnology: an evolving symbiotic relationship.
Biochemistry 2003;42(24):7259-69.
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2003: Sa-Ardyen Phiset; Vologodskii Alexander V; Seeman Nadrian C
The flexibility of DNA double crossover molecules.
Biophysical journal 2003;84(6):3829-37.
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2003: Seeman Nadrian C
DNA in a material world.
Nature 2003;421(6921):427-31.
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2002: Zhang Xiaoping; Yan Hao; Shen Zhiyong; Seeman Nadrian C
Paranemic cohesion of topologically-closed DNA molecules.
Journal of the American Chemical Society 2002;124(44):12940-1.
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2002: Zhu Lei; dos Santos Osvaldo; Seeman Nadrian C; Canary James W
Reaction of N3-benzoyl-3',5'-O-(di-tert-butylsilanediyl)uridine with hindered electrophiles: intermolecular N3 to 2'-O protecting group transfer.
Nucleosides, nucleotides & nucleic acids 2002;21(10):723-35.
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2002: Carbone Alessandra; Seeman Nadrian C
Circuits and programmable self-assembling DNA structures.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):12577-82.
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2002: Sha Ruojie; Liu Furong; Iwasaki Hiroshi; Seeman Nadrian C
Parallel symmetric immobile DNA junctions as substrates for E. coli RuvC Holliday junction resolvase.
Biochemistry 2002;41(36):10985-93.
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2002: Seeman Nadrian C
Key experimental approaches in DNA nanotechnology.
Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.] 2002;Chapter 12():Unit 12.1.
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2002: Sha Ruojie; Liu Furong; Seeman Nadrian C
Atomic force microscopic measurement of the interdomain angle in symmetric Holliday junctions.
Biochemistry 2002;41(19):5950-5.
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2002: Seeman Nadrian C; Belcher Angela M
Emulating biology: building nanostructures from the bottom up.
Proceedings of the National Academy of Sciences of the United States of America 2002;99 Suppl 2():6451-5.
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2002: Yan Hao; Zhang Xiaoping; Shen Zhiyong; Seeman Nadrian C
A robust DNA mechanical device controlled by hybridization topology.
Nature 2002;415(6867):62-5.
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2000: Podtelezhnikov A A; Mao C; Seeman N C; Vologodskii A
Multimerization-cyclization of DNA fragments as a method of conformational analysis.
Biophysical journal 2000;79(5):2692-704.
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2000: Sha R; Iwasaki H; Liu F; Shinagawa H; Seeman N C
Cleavage of symmetric immobile DNA junctions by Escherichia coli RuvC.
Biochemistry 2000;39(39):11982-8.
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2000: Mao C; LaBean T H; Relf J H; Seeman N C
Logical computation using algorithmic self-assembly of DNA triple-crossover molecules.
Nature 2000;407(6803):493-6.
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2000: Sha R; Liu F; Seeman N C
Direct evidence for spontaneous branch migration in antiparallel DNA Holliday junctions.
Biochemistry 2000;39(37):11514-22.
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2000: Sha R; Liu F; Millar D P; Seeman N C
Atomic force microscopy of parallel DNA branched junction arrays.
Chemistry & biology 2000;7(9):743-51.
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1999: Sun W; Mao C; Iwasaki H; Kemper B; Seeman N C
No braiding of Holliday junctions in positively supercoiled DNA molecules.
Journal of molecular biology 1999;294(3):683-99.
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1999: Seeman N C
DNA engineering and its application to nanotechnology.
Trends in biotechnology 1999;17(11):437-43.
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1999: Sha R; Liu F; Bruist M F; Seeman N C
Parallel helical domains in DNA branched junctions containing 5',5' and 3',3' linkages.
Biochemistry 1999;38(9):2832-41.
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1999: Mao C; Sun W; Shen Z; Seeman N C
A nanomechanical device based on the B-Z transition of DNA.
Nature 1999;397(6715):144-6.
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1998: Sun W; Mao C; Liu F; Seeman N C
Sequence dependence of branch migratory minima.
Journal of molecular biology 1998;282(1):59-70.
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1998: Vologodskii A V; Yang X; Seeman N C
Non-complementary DNA helical structure induced by positive torsional stress.
Nucleic acids research 1998;26(6):1503-8.
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1998: Yang X; Vologodskii A V; Liu B; Kemper B; Seeman N C
Torsional control of double-stranded DNA branch migration.
Biopolymers 1998;45(1):69-83.
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1997: Qiu H; Dewan J C; Seeman N C
A DNA decamer with a sticky end: the crystal structure of d-CGACGATCGT.
Journal of molecular biology 1997;267(4):881-98.
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1997: Li X; Wang H; Seeman N C
Direct evidence for Holliday junction crossover isomerization.
Biochemistry 1997;36(14):4240-7.
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1996: Wang H; Di Gate R J; Seeman N C
An RNA topoisomerase.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(18):9477-82.
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1995: Wang H; Seeman N C
Structural domains of DNA mesojunctions.
Biochemistry 1995;34(3):920-9.
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1995: Du S M; Wang H; Tse-Dinh Y C; Seeman N C
Topological transformations of synthetic DNA knots.
Biochemistry 1995;34(2):673-82.
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1994: Zhang S; Seeman N C
Symmetric Holliday junction crossover isomers.
Journal of molecular biology 1994;238(5):658-68.
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1994: Fu T J; Kemper B; Seeman N C
Cleavage of double-crossover molecules by T4 endonuclease VII.
Biochemistry 1994;33(13):3896-905.
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1994: Fu T J; Tse-Dinh Y C; Seeman N C
Holliday junction crossover topology.
Journal of molecular biology 1994;236(1):91-105.
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1994: Du S M; Seeman N C
The construction of a trefoil knot from a DNA branched junction motif.
Biopolymers 1994;34(1):31-7.
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1993: Morozov V N; Seeman N C; Kallenbach N R
New methods for depositing and imaging molecules in scanning tunneling microscopy.
Scanning microscopy 1993;7(3):757-76; discussion 776-9.
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1993: Zhang S; Fu T J; Seeman N C
Symmetric immobile DNA branched junctions.
Biochemistry 1993;32(32):8062-7.
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1993: Morozov V N; Sherman J; Kallenbach N R; Du S M; Seeman N C
A scanning tunnelling microscopy study of the formation and chemical activation of step defects on the basal plane of pyrolytic graphite.
Journal of microscopy 1993;170(Pt 3):237-45.
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1993: Fu T J; Seeman N C
DNA double-crossover molecules.
Biochemistry 1993;32(13):3211-20.
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1993: Wang H; Du S M; Seeman N C
Tight single-stranded DNA knots.
Journal of biomolecular structure & dynamics 1993;10(5):853-63.
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1992: Du S M; Zhang S; Seeman N C
DNA junctions, antijunctions, and mesojunctions.
Biochemistry 1992;31(45):10955-63.
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1992: Lu M; Guo Q; Marky L A; Seeman N C; Kallenbach N R
Thermodynamics of DNA branching.
Journal of molecular biology 1992;223(3):781-9.
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1991: Lu M; Guo Q; Seeman N C; Kallenbach N R
Parallel and antiparallel Holliday junctions differ in structure and stability.
Journal of molecular biology 1991;221(4):1419-32.
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1991: Chen J H; Seeman N C
The electrophoretic properties of a DNA cube and its substructure catenanes.
Electrophoresis 1991;12(9):607-11.
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1991: Wang Y L; Mueller J E; Kemper B; Seeman N C
Assembly and characterization of five-arm and six-arm DNA branched junctions.
Biochemistry 1991;30(23):5667-74.
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1990: Seeman N C
De novo design of sequences for nucleic acid structural engineering.
Journal of biomolecular structure & dynamics 1990;8(3):573-81.
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1990: Lu M; Guo Q; Mueller J E; Kemper B; Studier F W; Seeman N C; Kallenbach N R
Characterization of a bimobile DNA junction.
The Journal of biological chemistry 1990;265(28):16778-85.
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1990: Kimball A; Guo Q; Lu M; Cunningham R P; Kallenbach N R; Seeman N C; Tullius T D
Construction and analysis of parallel and antiparallel Holliday junctions.
The Journal of biological chemistry 1990;265(25):15348.
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1990: Mueller J E; Newton C J; Jensch F; Kemper B; Cunningham R P; Kallenbach N R; Seeman N C
Resolution of Holliday junction analogs by T4 endonuclease VII can be directed by substrate structure.
The Journal of biological chemistry 1990;265(23):13918-24.
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1990: Kimball A; Guo Q; Lu M; Cunningham R P; Kallenbach N R; Seeman N C; Tullius T D
Construction and analysis of parallel and antiparallel Holliday junctions.
The Journal of biological chemistry 1990;265(12):6544-7.
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1990: Lu M; Guo Q; Seeman N C; Kallenbach N R
Drug binding by branched DNA: selective interaction of the dye stains-all with an immobile junction.
Biochemistry 1990;29(13):3407-12.
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1990: Lu M; Guo Q; Pasternack R F; Wink D J; Seeman N C; Kallenbach N R
Drug binding by branched DNA: selective interaction of tetrapyridyl porphyrins with an immobile junction.
Biochemistry 1990;29(6):1614-24.
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1990: Guo Q; Lu M; Seeman N C; Kallenbach N R
Drug binding by branched DNA molecules: analysis by chemical footprinting of intercalation into an immobile junction.
Biochemistry 1990;29(2):570-8.
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1989: Lu M; Guo Q; Seeman N C; Kallenbach N R
DNase I cleavage of branched DNA molecules.
The Journal of biological chemistry 1989;264(35):20851-4.
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1989: Jensch F; Kosak H; Seeman N C; Kemper B
Cruciform cutting endonucleases from Saccharomyces cerevisiae and phage T4 show conserved reactions with branched DNAs.
The EMBO journal 1989;8(13):4325-34.
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1989: Seeman N C; Chen J H; Kallenbach N R
Gel electrophoretic analysis of DNA branched junctions.
Electrophoresis 1989;10(5-6):345-54.
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1989: Guo Q; Seeman N C; Kallenbach N R
Site-specific interaction of intercalating drugs with a branched DNA molecule.
Biochemistry 1989;28(6):2355-9.
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1988: Mueller J E; Kemper B; Cunningham R P; Kallenbach N R; Seeman N C
T4 endonuclease VII cleaves the crossover strands of Holliday junction analogs.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(24):9441-5.
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1988: Petrillo M L; Newton C J; Cunningham R P; Ma R I; Kallenbach N R; Seeman N C
The ligation and flexibility of four-arm DNA junctions.
Biopolymers 1988;27(9):1337-52.
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1988: Chen J H; Churchill M E; Tullius T D; Kallenbach N R; Seeman N C
Construction and analysis of monomobile DNA junctions.
Biochemistry 1988;27(16):6032-8.
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1988: Chen J H; Seeman N C; Kallenbach N R
Tracts of A.T base pairs retard the electrophoretic mobility of short DNA duplexes.
Nucleic acids research 1988;16(14B):6803-12.
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1988: Churchill M E; Tullius T D; Kallenbach N R; Seeman N C
A Holliday recombination intermediate is twofold symmetric.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(13):4653-6.
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1988: Seeman N C
Physical models for exploring DNA topology.
Journal of biomolecular structure & dynamics 1988;5(5):997-1004.
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1987: Marky L A; Kallenbach N R; McDonough K A; Seeman N C; Breslauer K J
The melting behavior of a DNA junction structure: a calorimetric and spectroscopic study.
Biopolymers 1987;26(9):1621-34.
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1986: Ma R I; Kallenbach N R; Sheardy R D; Petrillo M L; Seeman N C
Three-arm nucleic acid junctions are flexible.
Nucleic acids research 1986;14(24):9745-53.
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1985: Seeman N C
Macromolecular design, nucleic acid junctions, and crystal formation.
Journal of biomolecular structure & dynamics 1985;3(1):11-34.
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1983: Kallenbach N R; Ma R I; Wand A J; Veeneman G H; van Boom J H; Seeman N C
Fourth rank immobile nucleic acid junctions.
Journal of biomolecular structure & dynamics 1983;1(1):159-68.
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