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Shun-ichi Sekine

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Yasushi Hikida; Mitsuo Kuratani; Yoshitaka Bessho; Shun-ichi Sekine; Shigeyuki Yokoyama
Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase.
Mitsuo Kuratani; Masashi Hirano; Sakurako Goto-Ito; Yuzuru Itoh; Yasushi Hikida; Madoka Nishimoto; Shun-ichi Sekine; Yoshitaka Bessho; Takuhiro Ito; Henri Grosjean; Shigeyuki Yokoyama
Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
Shiho Chiba; Yuzuru Itoh; Shun-ichi Sekine; Shigeyuki Yokoyama
Structural basis for the major role of O-phosphoseryl-tRNA kinase in the UGA-specific encoding of selenocysteine.

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All Publications

2010: Yasushi Hikida; Mitsuo Kuratani; Yoshitaka Bessho; Shun-ichi Sekine; Shigeyuki Yokoyama
Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 12):1301-7.
2010: Mitsuo Kuratani; Masashi Hirano; Sakurako Goto-Ito; Yuzuru Itoh; Yasushi Hikida; Madoka Nishimoto; Shun-ichi Sekine; Yoshitaka Bessho; Takuhiro Ito; Henri Grosjean; Shigeyuki Yokoyama
Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
Journal of molecular biology 2010;401(3):323-33.
2010: Shiho Chiba; Yuzuru Itoh; Shun-ichi Sekine; Shigeyuki Yokoyama
Structural basis for the major role of O-phosphoseryl-tRNA kinase in the UGA-specific encoding of selenocysteine.
Molecular cell 2010;39(3):410-20.
2010: Shunsuke Tagami; Shun-ichi Sekine; Thirumananseri Kumarevel; Masaki Yamamoto; Shigeyuki Yokoyama
Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 1):64-8.
2009: Michiko Konno; Tomomi Sumida; Emiko Uchikawa; Yukie Mori; Tatsuo Yanagisawa; Shun-ichi Sekine; Shigeyuki Yokoyama; Shigeuki Yokoyama
Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP).
The FEBS journal 2009;276(17):4763-79.
2009: Yuzuru Itoh; Shun-ichi Sekine; Eiko Matsumoto; Ryogo Akasaka; Chie Takemoto; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs.
Journal of molecular biology 2009;385(5):1456-69.
2008: Yuzuru Itoh; Shun-ichi Sekine; Chizu Kuroishi; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
RNA biology 2008;5(3):169-77.
2007: Sakurako Goto-Ito; Ryohei Ishii; Takuhiro Ito; Rie Shibata; Emiko Fusatomi; Shun-ichi Sekine; Yoshitaka Bessho; Shigeyuki Yokoyama
Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 10):1059-68.
2007: Yoshitaka Bessho; Rie Shibata; Shun-ichi Sekine; Kazutaka Murayama; Kyoko Higashijima; Chie Hori-Takemoto; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(20):8293-8.
2006: Takuya B Hiyama; Min Zhao; Yu Kitago; Min Yao; Shun-ichi Sekine; Takaho Terada; Chizu Kuroishi; Zhi-Jie Liu; John P Rose; Seiki Kuramitsu; Mikako Shirouzu; Nobuhisa Watanabe; Shigeyuki Yokoyama; Isao Tanaka; Bi-Cheng Wang
Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
Journal of structural and functional genomics 2006;7(3-4):119-29.
2006: Shun-ichi Sekine; Mika Shichiri; Stéphane Bernier; Robert Chênevert; Jacques Lapointe; Shigeyuki Yokoyama
Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase.
Structure (London, England : 1993) 2006;14(12):1791-9.
2006: Hiroshi M Sasaki; Shun-ichi Sekine; Toru Sengoku; Ryuya Fukunaga; Motoyuki Hattori; Yukiko Utsunomiya; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14744-9.
2006: Wataru Iwasaki; Shun-ichi Sekine; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.
Journal of molecular biology 2006;360(2):329-42.
2006: Mitsuo Kuratani; Hiroaki Sakai; Masahiro Takahashi; Tatsuo Yanagisawa; Takatsugu Kobayashi; Kazutaka Murayama; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Chizu Kuroishi; Seiki Kuramitsu; Takaho Terada; Yoshitaka Bessho; Mikako Shirouzu; Shun-ichi Sekine; Shigeyuki Yokoyama
Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Journal of molecular biology 2006;355(3):395-408.
2005: Mitsuo Kuratani; Ryohei Ishii; Yoshitaka Bessho; Ryuya Fukunaga; Toru Sengoku; Mikako Shirouzu; Shun-ichi Sekine; Shigeyuki Yokoyama
Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus.
The Journal of biological chemistry 2005;280(16):16002-8.
2004: Kyoko Hanawa-Suetsugu; Shun-ichi Sekine; Hiroaki Sakai; Chie Hori-Takemoto; Takaho Terada; Satoru Unzai; Jeremy R H Tame; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of elongation factor P from Thermus thermophilus HB8.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9595-600.
2004: Irina Artsimovitch; Vsevolod Patlan; Shun-ichi Sekine; Marina N Vassylyeva; Takeshi Hosaka; Kozo Ochi; Shigeyuki Yokoyama; Dmitry G Vassylyev
Structural basis for transcription regulation by alarmone ppGpp.
Cell 2004;117(3):299-310.
2003: Hiroaki Sakai; Marina N Vassylyeva; Takanori Matsuura; Shun-ichi Sekine; Kazumi Gotoh; Makoto Nishiyama; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Dmitry G Vassylyev; Shigeyuki Yokoyama
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
Journal of molecular biology 2003;332(3):729-40.
2003: Marina N Vassylyeva; Hiroaki Sakai; Takanori Matsuura; Shun-ichi Sekine; Makoto Nishiyama; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Dmitry G Vassylyev; Shigeyuki Yokoyama
Cloning, expression, purification, crystallization and initial crystallographic analysis of the lysine-biosynthesis LysX protein from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 9):1651-2.
2003: Shun-ichi Sekine; Osamu Nureki; Daniel Y Dubois; Stéphane Bernier; Robert Chênevert; Jacques Lapointe; Dmitry G Vassylyev; Shigeyuki Yokoyama
ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding.
The EMBO journal 2003;22(3):676-88.
2003: Shuya Fukai; Osamu Nureki; Shun-ichi Sekine; Atsushi Shimada; Dmitry G Vassylyev; Shigeyuki Yokoyama
Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.
RNA (New York, N.Y.) 2003;9(1):100-11.
2002: Marina N Vassylyeva; Jookyung Lee; Shun-ichi Sekine; Oleg Laptenko; Seiki Kuramitsu; Takehiko Shibata; Yorinao Inoue; Sergei Borukhov; Dmitry G Vassylyev; Shigeyuki Yokoyama
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 9):1497-500.
2002: Dmitry G Vassylyev; Shun-ichi Sekine; Oleg Laptenko; Jookyung Lee; Marina N Vassylyeva; Sergei Borukhov; Shigeyuki Yokoyama
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.
Nature 2002;417(6890):712-9.
2001: Shun-ichi Sekine; O Nureki; A Shimada; Dmitry G Vassylyev; Shigeyuki Yokoyama
Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase.
Nature structural biology 2001;8(3):203-6.
2001: Shun-ichi Sekine; A Shimada; O Nureki; J Cavarelli; D Moras; Dmitry G Vassylyev; S Yokoyama
Crucial role of the high-loop lysine for the catalytic activity of arginyl-tRNA synthetase.
The Journal of biological chemistry 2001;276(6):3723-6.
2001: Osamu Nureki; Shuya Fukai; Shun-ichi Sekine; Atsuko Shimada; Takaho Terada; Takashi Nakama; Mikako Shirouzu; Dmitry G Vassylyev; Shigeyuki Yokoyama
Structural basis for amino acid and tRNA recognition by class I aminoacyl-tRNA synthetases.
Cold Spring Harbor symposia on quantitative biology 2001;66():167-73.
2000: Shuya Fukai; Osamu Nureki; Shun-ichi Sekine; Atsuko Shimada; J Tao; Dmitry G Vassylyev; Shigeyuki Yokoyama
Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.
Cell 2000;103(5):793-803.
1999: Shun-ichi Sekine; Osamu Nureki; M Tateno; Shigeyuki Yokoyama
The identity determinants required for the discrimination between tRNAGlu and tRNAAsp by glutamyl-tRNA synthetase from Escherichia coli.
European journal of biochemistry / FEBS 1999;261(2):354-60.