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Joachim Selbig

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TOP 3
Natascha Hill; Alexander Leow; Joachim Selbig; Ralph Tiedemann; Christoph Bleidorn; Detlef Groth; Stefanie Hartmann
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information.
ronan sulpice; Hendrik Tschoep; Carla Antonio; Alisdair R Fernie; Yves Gibon; Hirofumi Ishihara; Sabrina Kleessen; Abdelhalim Larhlimi; Zoran Nikoloski; Joachim Selbig; Mark Stitt
Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions.
Detlef Groth; Stefanie Hartmann; Sebastian Klie; Joachim Selbig
Principal components analysis.

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All Publications

2013: Natascha Hill; Alexander Leow; Joachim Selbig; Ralph Tiedemann; Christoph Bleidorn; Detlef Groth; Stefanie Hartmann
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information.
Theory in biosciences = Theorie in den Biowissenschaften 2013;132(2):93-104.
2013: ronan sulpice; Hendrik Tschoep; Carla Antonio; Alisdair R Fernie; Yves Gibon; Hirofumi Ishihara; Sabrina Kleessen; Abdelhalim Larhlimi; Zoran Nikoloski; Joachim Selbig; Mark Stitt
Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions.
Plant physiology 2013;162(1):347-63.
2013: Detlef Groth; Stefanie Hartmann; Sebastian Klie; Joachim Selbig
Principal components analysis.
Methods in molecular biology (Clifton, N.J.) 2013;930():527-47.
2012: Ke-Tai Guo; Kathrin Juerchott; Sabina Eigenbrod; Peng Fu; Joachim Selbig; Jörg-Christian Tonn; Christian Schichor
Isolation and characterization of bone marrow-derived progenitor cells from malignant gliomas.
Anticancer research 2012;32(11):4971-82.
2012: Dorothee Girbig; Joachim Selbig; Sergio Grimbs
A MATLAB toolbox for structural kinetic modeling.
Bioinformatics (Oxford, England) 2012;28(19):2546-7.
2012: Abdelhalim Larhlimi; Georg Basler; Sergio Grimbs; Joachim Selbig; Zoran Nikoloski
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.
Bioinformatics (Oxford, England) 2012;28(18):i502-i508.
2012: Rhonda C Meyer; Dirk Repsilber; Renate Schmidt; Matthias Scholz; Joachim Selbig; Maria von Korff; Lothar Willmitzer; Hanna Witucka-Wall; Martina Becher; Anna Blacha; Anastassia Boudichevskaia; Peter Dörmann; Oliver Fiehn; Svetlana Friedel; Jan Lisec; Michael Melzer; Thomas Altmann
Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids.
The Plant journal : for cell and molecular biology 2012;71(4):669-83.
2012: Georg Basler; Oliver Ebenhöh; Sergio Grimbs; Joachim Selbig; Zoran Nikoloski
Evolutionary significance of metabolic network properties.
Journal of the Royal Society, Interface / the Royal Society 2012;9(71):1168-76.
2012: Christian Schichor; Joachim Selbig; Tamara Lah Turnšek; Valerie Albrecht; Alexander Buchner; Kathrin Jürchott; Benjamin Korte; Helena Motaln; Josef Mysliwietz; Igor Paron; Rainer Riesenberg; Joerg-Christian Tonn
Mesenchymal stem cells and glioma cells form a structural as well as a functional syncytium in vitro.
Experimental neurology 2012;234(1):208-19.
2012: Sandra Andorf; Rhonda C Meyer; Thomas Altmann; Joachim Selbig; Dirk Repsilber
Integration of a systems biological network analysis and QTL results for biomass heterosis in Arabidopsis thaliana.
PloS one 2012;7(11):e49951.
2012: Abdelhalim Larhlimi; Joachim Selbig; Laszlo David; Alexander Bockmayr
F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks.
BMC bioinformatics 2012;13():57.
2012: Dorothee Girbig; Sergio Grimbs; Joachim Selbig
Systematic analysis of stability patterns in plant primary metabolism.
PloS one 2012;7(4):e34686.
2012: Manuela Hische; Abdelhalim Larhlimi; Andreas Fh Pfeiffer; Franziska Schwarz; Joachim Selbig; Anke Assmann; Thomas Bobbert; Gareth S Catchpole; Antje Fischer-Rosinský; Lothar Willmitzer; Joachim Spranger
A distinct metabolic signature predicts development of fasting plasma glucose.
Journal of clinical bioinformatics 2012;2():3.
2012: Stefanie Hartmann; Conrad Helm; Matthias Meyer; Birgit Nickel; Joachim Selbig; Torsten H Struck; Ralph Tiedemann; Christoph Bleidorn
Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data.
PloS one 2012;7(1):e29843.
2012: Kristina Gruden; Ana Herman; Matjaž Hren; Alojz Ihan; Tanja Albrecht; Chris Bauer; Andrej Blejec; Miomir Knežević; Andreja Kopitar; Michal Or-Guil; Maja Ravnikar; Primož Rožman; Johannes Schuchardt; Joachim Selbig; Borut Stabuc; Urban Svajger; Klemen Zupančič; Matjaz Jeras
A "crossomics" study analysing variability of different components in peripheral blood of healthy caucasoid individuals.
PloS one 2012;7(1):e28761.
2011: Abdelhalim Larhlimi; Sylvain Blachon; Joachim Selbig; Zoran Nikoloski
Robustness of metabolic networks: a review of existing definitions.
Bio Systems 2011;106(1):1-8.
2011: Jan Lisec; Zoran Nikoloski; Hans-Peter Piepho; Lilla Römisch-Margl; Joachim Selbig; Patrick Giavalisco; Alfons Gierl; Lothar Willmitzer
Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns.
The Plant journal : for cell and molecular biology 2011;68(2):326-36.
2011: Kathrin Jürchott; Christian Schichor; Gareth Catchpole; Kristen Feher; Ke-Tai Guo; Lothar Willmitzer; Joachim Selbig
Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells.
Bio Systems 2011;105(2):130-9.
2011: Wolfgang Hoehenwarter; Jan Hummel; Abdelhalim Larhlimi; Joachim Selbig; Joost T van Dongen; Volker Egelhofer; Stefanie Wienkoop; Wolfram Weckwerth
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.
Journal of proteome research 2011;10(7):2979-91.
2011: Georg Basler; Oliver Ebenhöh; Joachim Selbig; Zoran Nikoloski
Mass-balanced randomization of metabolic networks.
Bioinformatics (Oxford, England) 2011;27(10):1397-403.
2011: Zoran Nikoloski; Sergio Grimbs; Sebastian Klie; Joachim Selbig
Complexity of automated gene annotation.
Bio Systems 2011;104(1):1-8.
2011: Sergio Grimbs; Anne Arnold; Aneta Koseska; Jurgen Kurths; Joachim Selbig; Zoran Nikoloski
Spatiotemporal dynamics of the Calvin cycle: multistationarity and symmetry breaking instabilities.
Bio Systems 2011;103(2):212-23.
2011: Malgorzata Ryngajllo; Joachim Selbig; Liam Childs; Federico M Giorgi; Marc Lohse; Anja Lude; Björn Usadel
SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data.
Frontiers in plant science 2011;2():43.
2011: Gareth Catchpole; Alexander Platzer; Cornelia Weikert; Carsten Kempkensteffen; Manfred Johannsen; Hans Krause; Klaus Jung; Kurt Miller; Lothar Willmitzer; Joachim Selbig; Steffen Weikert
Metabolic profiling reveals key metabolic features of renal cell carcinoma.
Journal of cellular and molecular medicine 2011;15(1):109-18.
2010: Zoran Nikoloski; Patrick May; Joachim Selbig
Algebraic connectivity may explain the evolution of gene regulatory networks.
Journal of theoretical biology 2010;267(1):7-14.
2010: Manuela Hische; Olga Luis-Dominguez; Andreas F H Pfeiffer; Peter E Schwarz; Joachim Selbig; Joachim Spranger
Decision trees as a simple-to-use and reliable tool to identify individuals with impaired glucose metabolism or type 2 diabetes mellitus.
European journal of endocrinology / European Federation of Endocrine Societies 2010;163(4):565-71.
2010: Matthias Steinfath; Nadine Strehmel; Rolf Peters; Nicolas Schauer; Detlef Groth; Jan Hummel; Martin Steup; Joachim Selbig; Joachim Kopka; Peter Geigenberger; Joost T Van Dongen
Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach.
Plant biotechnology journal 2010;8(8):900-11.
2010: Volker Bischoff; Joachim Selbig; Wolf-Rüdiger Scheible
Involvement of TBL/DUF231 proteins into cell wall biology.
Plant signaling & behavior 2010;5(8):1057-9.
2010: Marc Lohse; Adriano Nunes-Nesi; Peter Krüger; Axel Nagel; Jan Hannemann; Federico M Giorgi; Liam Childs; Sonia Osorio; Dirk Walther; Joachim Selbig; Nese Sreenivasulu; Mark Stitt; Alisdair R Fernie; Björn Usadel
Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis.
Plant physiology 2010;153(2):642-51.
2010: Szymon Jozefczuk; Sebastian Klie; Gareth Catchpole; Jedrzej Szymanski; Alvaro Cuadros-Inostroza; Dirk Steinhauser; Joachim Selbig; Lothar Willmitzer
Metabolomic and transcriptomic stress response of Escherichia coli.
Molecular systems biology 2010;6():364.
2010: Diego Mauricio Riaño-Pachón; Sabrina Kleessen; Jost Neigenfind; Pawel Durek; Elke Weber; Wolfgang R Engelsberger; Dirk Walther; Joachim Selbig; waltraud Schulze; Birgit Kersten
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana.
BMC genomics 2010;11():411.
2010: Bruno B Schwenk; Joachim Selbig; Yehuda Ben-Zion; Matthias Holschneider
ExPlanes: exploring planes in triplet data.
Journal of integrative bioinformatics 2010;7(3):.
2010: Dirk Repsilber; Sabine Kern; Anna Telaar; Gerhard Walzl; Gillian F Black; Joachim Selbig; Shreemanta K Parida; Stefan H E Kaufmann; Marc Jacobsen
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach.
BMC bioinformatics 2010;11():27.
2010: Marina Korn; Tanja Gärtner; Alexander Erban; Joachim Kopka; Joachim Selbig; Dirk K Hincha
Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition.
Molecular plant 2010;3(1):224-35.
2010: Sandra Andorf; Joachim Selbig; Thomas Altmann; Kathrin Poos; Hanna Witucka-Wall; Dirk Repsilber
Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;120(2):249-59.
2010: Matthias Steinfath; Tanja Gärtner; Jan Lisec; Rhonda C Meyer; Thomas Altmann; Lothar Willmitzer; Joachim Selbig
Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;120(2):239-47.
2010: Rhonda Christiane Meyer; Barbara Kusterer; Jan Lisec; Matthias Steinfath; Martina Becher; Hanno Scharr; Albrecht E Melchinger; Joachim Selbig; Ulrich Schurr; Lothar Willmitzer; Thomas Altmann
QTL analysis of early stage heterosis for biomass in Arabidopsis.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;120(2):227-37.
2009: Jan Lisec; Matthias Steinfath; Rhonda C Meyer; Joachim Selbig; Albrecht E Melchinger; Lothar Willmitzer; Thomas Altmann
Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations.
The Plant journal : for cell and molecular biology 2009;59(5):777-88.
2009: ronan sulpice; Eva-Theresa Pyl; Hirofumi Ishihara; Sandra Trenkamp; Matthias Steinfath; Hanna Witucka-Wall; Yves Gibon; Björn Usadel; Fabien Poree; Maria Conceição Piques; Maria von Korff; Marie-Caroline Steinhauser; Joost J B Keurentjes; Manuela Guenther; Melanie Hoehne; Joachim Selbig; Alisdair R Fernie; Thomas Altmann; Mark Stitt
Starch as a major integrator in the regulation of plant growth.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(25):10348-53.
2009: Jedrzej Szymanski; Szymon Jozefczuk; Zoran Nikoloski; Joachim Selbig; Victoria Nikiforova; Gareth Catchpole; Lothar Willmitzer
Stability of metabolic correlations under changing environmental conditions in Escherichia coli--a systems approach.
PloS one 2009;4(10):e7441.
2009: Joachim Selbig; Matthias Steinfath; Dirk Repsilber
Network structure and biological function: reconstruction, modeling, and statistical approaches.
EURASIP journal on bioinformatics & systems biology 2009;():714985.
2009: Pawel Durek; Christian Schudoma; Wolfram Weckwerth; Joachim Selbig; Dirk Walther
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.
BMC bioinformatics 2009;10():117.
2009: Tanja Gärtner; Matthias Steinfath; Sandra Andorf; Jan Lisec; Rhonda C Meyer; Thomas Altmann; Lothar Willmitzer; Joachim Selbig
Improved heterosis prediction by combining information on DNA- and metabolic markers.
PloS one 2009;4(4):e5220.
2009: Sascha Bulik; Sergio Grimbs; Carola Huthmacher; Joachim Selbig; Hermann-Georg Holzhütter
Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks.
The FEBS journal 2009;276(2):410-24.
2008: Zoran Nikoloski; Sergio Grimbs; Patrick May; Joachim Selbig
Metabolic networks are NP-hard to reconstruct.
Journal of theoretical biology 2008;254(4):807-16.
2008: Stefanie Wienkoop; Katja Morgenthal; Florian Wolschin; Matthias Scholz; Joachim Selbig; Wolfram Weckwerth
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana.
Molecular & cellular proteomics : MCP 2008;7(9):1725-36.
2008: Nicolas Schauer; Yaniv Semel; Ilse Balbo; Matthias Steinfath; Dirk Repsilber; Joachim Selbig; Tzili Pleban; Dani Zamir; Alisdair R Fernie
Mode of inheritance of primary metabolic traits in tomato.
The Plant cell 2008;20(3):509-23.
2008: Jan Lisec; Rhonda C Meyer; Matthias Steinfath; Henning Redestig; Martina Becher; Hanna Witucka-Wall; Oliver Fiehn; Ottó Törjék; Joachim Selbig; Thomas Altmann; Lothar Willmitzer
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations.
The Plant journal : for cell and molecular biology 2008;53(6):960-72.
2008: Charles Guy; Fatma Kaplan; Joachim Kopka; Joachim Selbig; Dirk K Hincha
Metabolomics of temperature stress.
Physiologia plantarum 2008;132(2):220-35.
2008: Matthias Steinfath; Detlef Groth; Jan Lisec; Joachim Selbig
Metabolite profile analysis: from raw data to regression and classification.
Physiologia plantarum 2008;132(2):150-61.
2008: Jost Neigenfind; Gabor Gyetvai; Rico Basekow; Svenja Diehl; Ute Achenbach; Christiane Gebhardt; Joachim Selbig; Birgit Kersten
Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
BMC genomics 2008;9():356.
2008: Karin I Köhl; Georg Basler; Alexander Lüdemann; Joachim Selbig; Dirk Walther
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research.
Plant methods 2008;4():11.
2008: Joshua L Heazlewood; Pawel Durek; Jan Hummel; Joachim Selbig; Wolfram Weckwerth; Dirk Walther; waltraud Schulze
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.
Nucleic acids research 2008;36(Database issue):D1015-21.
2007: Ralf Steuer; Adriano Nunes Nesi; Alisdair R Fernie; Thilo Gross; Bernd Blasius; Joachim Selbig
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.
Bioinformatics (Oxford, England) 2007;23(11):1378-85.
2007: Wolfram Stacklies; Henning Redestig; Matthias Scholz; Dirk Walther; Joachim Selbig
pcaMethods--a bioconductor package providing PCA methods for incomplete data.
Bioinformatics (Oxford, England) 2007;23(9):1164-7.
2007: Henning Redestig; Dirk Repsilber; Florian Sohler; Joachim Selbig
Integrating functional knowledge during sample clustering for microarray data using unsupervised decision trees.
Biometrical journal. Biometrische Zeitschrift 2007;49(2):214-29.
2007: Rhonda C Meyer; Matthias Steinfath; Jan Lisec; Martina Becher; Hanna Witucka-Wall; Ottó Törjék; Oliver Fiehn; Anne Eckardt; Lothar Willmitzer; Joachim Selbig; Thomas Altmann
The metabolic signature related to high plant growth rate in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(11):4759-64.
2007: Dirk Walther; Roman Brunnemann; Joachim Selbig
The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana.
PLoS genetics 2007;3(2):e11.
2007: Henning Redestig; Daniel Weicht; Joachim Selbig; Matthew A Hannah
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana.
BMC bioinformatics 2007;8():454.
2007: Sergio Grimbs; Joachim Selbig; Sascha Bulik; Hermann-Georg Holzhütter; Ralf Steuer
The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks.
Molecular systems biology 2007;3():146.
2007: Jan Hummel; Michaela Niemann; Stefanie Wienkoop; waltraud Schulze; Dirk Steinhauser; Joachim Selbig; Dirk Walther; Wolfram Weckwerth
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
BMC bioinformatics 2007;8():216.
2007: Matthias Steinfath; Dirk Repsilber; Matthias Scholz; Dirk Walther; Joachim Selbig
Integrated data analysis for genome-wide research.
EXS 2007;97():309-29.
2007: Charles J Baxter; Henning Redestig; Nicolas Schauer; Dirk Repsilber; Kiran Patil; Jens Nielsen; Joachim Selbig; Junli Liu; Alisdair R Fernie; Lee J Sweetlove
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.
Plant physiology 2007;143(1):312-25.
2007: Ralf Steuer; Katja Morgenthal; Wolfram Weckwerth; Joachim Selbig
A gentle guide to the analysis of metabolomic data.
Methods in molecular biology (Clifton, N.J.) 2007;358():105-26.
2007: Matthias Scholz; Joachim Selbig
Visualization and analysis of molecular data.
Methods in molecular biology (Clifton, N.J.) 2007;358():87-104.
2006: Matthias Möhlig; A Flöter; Joachim Spranger; Martin O. Weickert; Thilo Schill; Hans W Schlösser; Georg Brabant; Andreas F H Pfeiffer; Joachim Selbig; Christof Schöfl
Predicting impaired glucose metabolism in women with polycystic ovary syndrome by decision tree modelling.
Diabetologia 2006;49(11):2572-9.
2006: Ralf Steuer; Thilo Gross; Joachim Selbig; Bernd Blasius
Structural kinetic modeling of metabolic networks.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(32):11868-73.
2006: Frank Cordes; Rolf Kaiser; Joachim Selbig
Bioinformatics approach to predicting HIV drug resistance.
Expert review of molecular diagnostics 2006;6(2):207-15.
2006: Ralf Steuer; Peter Humburg; Joachim Selbig
Validation and functional annotation of expression-based clusters based on gene ontology.
BMC bioinformatics 2006;7():380.
2005: Melanie Balduin; Saleta Sierra; Martin Däumer; Jürgen K Rockstroh; Mark Oette; Gerd Fätkenheuer; Bernd Kupfer; Niko Beerenwinkel; Daniel Hoffmann; Joachim Selbig; Herbert Pfister; Rolf Kaiser
Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy.
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2005;34(4):277-87.
2005: Niko Beerenwinkel; Tobias Sing; Thomas Lengauer; Jörg Rahnenführer; Kirsten Roomp; Igor Savenkov; Roman Fischer; Daniel Hoffmann; Joachim Selbig; Klaus Korn; Hauke Walter; Thomas Berg; Patrick Braun; Gerd Fätkenheuer; Mark Oette; Jürgen Rockstroh; Bernd Kupfer; Rolf Kaiser; Martin Däumer
Computational methods for the design of effective therapies against drug resistant HIV strains.
Bioinformatics (Oxford, England) 2005;21(21):3943-50.
2005: Matthias Scholz; Fatma Kaplan; Charles L Guy; Joachim Kopka; Joachim Selbig
Non-linear PCA: a missing data approach.
Bioinformatics (Oxford, England) 2005;21(20):3887-95.
2005: Niko Beerenwinkel; Jörg Rahnenführer; Martin Däumer; Daniel Hoffmann; Rolf Kaiser; Joachim Selbig; Thomas Lengauer
Learning multiple evolutionary pathways from cross-sectional data.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(6):584-98.
2005: Björn Usadel; Axel Nagel; Oliver Thimm; Henning Redestig; Oliver E Blaesing; Natalia Palacios-Rojas; Joachim Selbig; Jan Hannemann; Maria Conceição Piques; Dirk Steinhauser; Wolf-Rüdiger Scheible; Yves Gibon; Rosa Morcuende; Daniel Weicht; Svenja Meyer; Mark Stitt
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Plant physiology 2005;138(3):1195-204.
2005: Niko Beerenwinkel; Martin Däumer; Tobias Sing; Jörg Rahnenführer; Thomas Lengauer; Joachim Selbig; Daniel Hoffmann; Rolf Kaiser
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance.
The Journal of infectious diseases 2005;191(11):1953-60.
2005: Niko Beerenwinkel; Jörg Rahnenführer; Rolf Kaiser; Daniel Hoffmann; Joachim Selbig; Thomas Lengauer
Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
Bioinformatics (Oxford, England) 2005;21(9):2106-7.
2005: Jan Hummel; Nima Keshvari; Wolfram Weckwerth; Joachim Selbig
Species-specific analysis of protein sequence motifs using mutual information.
BMC bioinformatics 2005;6():164.
2004: Yves Gibon; Oliver E Blaesing; Jan Hannemann; Petronia Carillo; Melanie Höhne; Janneke H M Hendriks; Natalia Palacios; Joanna Cross; Joachim Selbig; Mark Stitt
A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.
The Plant cell 2004;16(12):3304-25.
2004: Alexander Lüdemann; Daniel Weicht; Joachim Selbig; Joachim Kopka
PaVESy: Pathway Visualization and Editing System.
Bioinformatics (Oxford, England) 2004;20(16):2841-4.
2004: M Scholz; S Gatzek; A Sterling; Oliver Fiehn; Joachim Selbig
Metabolite fingerprinting: detecting biological features by independent component analysis.
Bioinformatics (Oxford, England) 2004;20(15):2447-54.
2004: Carsten O Daub; Ralf Steuer; Joachim Selbig; Sebastian Kloska
Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data.
BMC bioinformatics 2004;5():118.
2004: Dirk Steinhauser; Björn H Junker; Alexander Luedemann; Joachim Selbig; Joachim Kopka
Hypothesis-driven approach to predict transcriptional units from gene expression data.
Bioinformatics (Oxford, England) 2004;20(12):1928-39.
2004: A Flöter; J Nicolas; T Schaub; Joachim Selbig
Threshold extraction in metabolite concentration data.
Bioinformatics (Oxford, England) 2004;20(10):1491-4.
2004: Oliver Thimm; Oliver E Bläsing; Yves Gibon; Axel Nagel; Svenja Meyer; Peter Krüger; Joachim Selbig; Lukas A Müller; Seung-Yon Rhee; Mark Stitt
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
The Plant journal : for cell and molecular biology 2004;37(6):914-39.
2003: Carsten O Daub; Sebastian Kloska; Joachim Selbig
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data.
Bioinformatics (Oxford, England) 2003;19(17):2332-3.
2003: Katharina Wolf; Hauke Walter; Niko Beerenwinkel; Wilco Keulen; Rolf Kaiser; Daniel Hoffmann; Thomas Lengauer; Joachim Selbig; Anne-Mieke Vandamme; Klaus Korn; Barbara Schmidt
Tenofovir resistance and resensitization.
Antimicrobial agents and chemotherapy 2003;47(11):3478-84.
2003: Ewa Urbanczyk-Wochniak; Alexander Luedemann; Joachim Kopka; Joachim Selbig; Ute Roessner-Tunali; Lothar Willmitzer; Alisdair R Fernie
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology.
EMBO reports 2003;4(10):989-93.
2003: Wolfram Weckwerth; Joachim Selbig
Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information.
Biochemical and biophysical research communications 2003;307(3):516-21.
2003: Niko Beerenwinkel; Martin Däumer; Mark Oette; Klaus Korn; Daniel Hoffmann; Rolf Kaiser; Thomas Lengauer; Joachim Selbig; Hauke Walter
Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes.
Nucleic acids research 2003;31(13):3850-5.
2003: Niko Beerenwinkel; Thomas Lengauer; Martin Däumer; Rolf Kaiser; Hauke Walter; Klaus Korn; Daniel Hoffmann; Joachim Selbig
Methods for optimizing antiviral combination therapies.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i16-25.
2002: Niko Beerenwinkel; Barbara Schmidt; Hauke Walter; Rolf Kaiser; Thomas Lengauer; Daniel Hoffmann; Klaus Korn; Joachim Selbig
Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):8271-6.
2002: Ralf Steuer; Jürgen Kurths; Carsten O Daub; J Weise; Joachim Selbig
The mutual information: detecting and evaluating dependencies between variables.
Bioinformatics (Oxford, England) 2002;18 Suppl 2():S231-40.