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Orin Shanks

Research Profile

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Publications

TOP 3
Orin C Shanks; Mitchell L Sogin; Susan M Huse; Catherine A Kelty; Ryan J Newton; Sandra L McLellan
Comparison of the microbial community structures of untreated wastewaters from different geographic locales.
Asja Korajkic; Brian R McMinn; Orin C Shanks; G Shay Fout; Valerie J Harwood; Nicholas J Ashbolt
Differential decay of enterococci and Escherichia coli originating from two fecal pollution sources.
Reagan R Converse; Alfred P Dufour; Richard A Haugland; Edward Hudgens; Catherine A Kelty; Julie L Kinzelman; Hodon Ryu; Elizabeth A Sams; Jorge W Santo-Domingo; Orin C Shanks; Shawn D Siefring; Timothy J Wade
Dramatic improvements in beach water quality following gull removal.

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All Publications

2013: Orin C Shanks; Mitchell L Sogin; Susan M Huse; Catherine A Kelty; Ryan J Newton; Sandra L McLellan
Comparison of the microbial community structures of untreated wastewaters from different geographic locales.
Applied and environmental microbiology 2013;79(9):2906-13.
2013: Asja Korajkic; Brian R McMinn; Orin C Shanks; G Shay Fout; Valerie J Harwood; Nicholas J Ashbolt
Differential decay of enterococci and Escherichia coli originating from two fecal pollution sources.
Applied and environmental microbiology 2013;79(7):2488-92.
2012: Reagan R Converse; Alfred P Dufour; Richard A Haugland; Edward Hudgens; Catherine A Kelty; Julie L Kinzelman; Hodon Ryu; Elizabeth A Sams; Jorge W Santo-Domingo; Orin C Shanks; Shawn D Siefring; Timothy J Wade
Dramatic improvements in beach water quality following gull removal.
Environmental science & technology 2012;46(18):10206-13.
2012: Catherine A Kelty; Mano Sivaganesan; Manju Varma; Richard A Haugland; Orin C Shanks
Distribution of genetic marker concentrations for fecal indicator bacteria in sewage and animal feces.
Applied and environmental microbiology 2012;78(12):4225-32.
2012: Orin C Shanks; Christopher Sinigalliano; Mano Sivaganesan; Christopher Staley; Erin A Stelzer; Manju Varma; David Wanless; Steve Weisberg; Tamara Anan'eva; Angelia Denene Blackwood; Rebecca N Bushon; Yiping Cao; Monica R Greene; John Griffith; Valarie J Harwood; Catherine A Kelty; Julie Kinzelman; Rachel T Noble; Kevin H Oshima; Lindsay Peed; Richard A Haugland
Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria.
Environmental science & technology 2012;46(2):945-53.
2011: Hyatt C Green; Richard A Haugland; Orin C Shanks; Mano Sivaganesan; Katharine G Field
Differential decay of human faecal Bacteroides in marine and freshwater.
Environmental microbiology 2011;13(12):3235-49.
2011: Lindsay A Peed; Mano Sivaganesan; Catherine A Kelty; Mark C Meckes; Thomas Mooney; Christopher T Nietch; Orin C Shanks
Combining land use information and small stream sampling with PCR-based methods for better characterization of diffuse sources of human fecal pollution.
Environmental science & technology 2011;45(13):5652-9.
2011: Shane W Rogers; Zirong Zhong; Matthew Donnelly; Catherine A Kelty; Sumona Mondal; Lindsay Peed; Orin C Shanks
Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils.
Applied and environmental microbiology 2011;77(14):4839-48.
2011: Orin C Shanks; Catherine A Kelty; Shawn Archibeque; Michael Jenkins; Ryan J Newton; Sandra L McLellan; Susan M Huse; Mitchell L Sogin
Community structures of fecal bacteria in cattle from different animal feeding operations.
Applied and environmental microbiology 2011;77(9):2992-3001.
2010: Richard A Haugland; Manju Varma; Mano Sivaganesan; Catherine Kelty; Lindsay Peed; Orin C Shanks
Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR.
Systematic and applied microbiology 2010;33(6):348-57.
2010: Mano Sivaganesan; Richard A Haugland; Eunice C Chern; Orin C Shanks
Improved strategies and optimization of calibration models for real-time PCR absolute quantification.
Water research 2010;44(16):4726-35.
2010: Orin C Shanks; Karen White; Catherine A Kelty; Mano Sivaganesan; Janet Blannon; Mark Meckes; Manju Varma; Richard A Haugland
Performance of PCR-based assays targeting Bacteroidales genetic markers of human fecal pollution in sewage and fecal samples.
Environmental science & technology 2010;44(16):6281-8.
2010: Orin C Shanks; Karen White; Catherine A Kelty; Sam Hayes; Mano Sivaganesan; Michael Jenkins; Manju Varma; Richard A Haugland
Performance assessment PCR-based assays targeting bacteroidales genetic markers of bovine fecal pollution.
Applied and environmental microbiology 2010;76(5):1359-66.
2009: Orin C Shanks; Catherine A Kelty; Mano Sivaganesan; Manju Varma; Richard A Haugland
Quantitative PCR for genetic markers of human fecal pollution.
Applied and environmental microbiology 2009;75(17):5507-13.
2008: Yong-Jin Lee; Marirosa Molina; Jorge W Santo Domingo; Jonathan D Willis; Michael Cyterski; Dinku M Endale; Orin C Shanks
Temporal assessment of the impact of exposure to cow feces in two watersheds by multiple host-specific PCR assays.
Applied and environmental microbiology 2008;74(22):6839-47.
2008: Orin C Shanks; Emina Atikovic; Angelia Denene Blackwood; Jingrang Lu; Rachel T Noble; Jorge Santo Domingo; Shawn Seifring; Mano Sivaganesan; Richard A Haugland
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution.
Applied and environmental microbiology 2008;74(3):745-52.
2008: Mano Sivaganesan; Shawn Seifring; Manju Varma; Richard A Haugland; Orin C Shanks
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards.
BMC bioinformatics 2008;9():120.
2007: Jingrang Lu; Jorge W Santo Domingo; Orin C Shanks
Identification of chicken-specific fecal microbial sequences using a metagenomic approach.
Water research 2007;41(16):3561-74.
2007: Orin C Shanks; Jorge W Santo Domingo; Jingrang Lu; Catherine A Kelty; James E Graham
Identification of bacterial DNA markers for the detection of human fecal pollution in water.
Applied and environmental microbiology 2007;73(8):2416-22.
2006: Orin C Shanks; Christopher Nietch; Michael T Simonich; Melissa Younger; Don Reynolds; Katharine G Field
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon.
Applied and environmental microbiology 2006;72(8):5537-46.
2006: Orin C Shanks; Jorge W Santo Domingo; James E Graham
Use of competitive DNA hybridization to identify differences in the genomes of bacteria.
Journal of microbiological methods 2006;66(2):321-30.
2006: Orin C Shanks; Jorge W Santo Domingo; Regina Lamendella; Catherine A Kelty; James E Graham
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples.
Applied and environmental microbiology 2006;72(6):4054-60.