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Joan-Emma Shea

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Concepts & Ideas

Physiology

Protein Folding

Activities & Behaviors

Computer Simulation

Occupations

Thermodynamics

Chemicals & Drugs

Disorders

Alzheimer Disease

Phenomena

Genes & Molecular Sequences

Amino Acid Sequence

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Network (preview)

Co-Publications
Name
19
Baumketner, Andrij
8
Bowers, Michael
6
Bernstein, Summer
6
Teplow, David
6
Wyttenbach, Thomas
4
Bitan, Gal
4
Friedel, Miriam
4
Jewett, AI
4
Lazo, Noel
3
Lampoudi, Sotiria
2
Hiwatari, Y
2
Wu, Chun
1
Ding, Feng
1
Jaeger, Luc
1
Urbanc, Brigita

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Publications

TOP 3
Bellesia Giovanni; Shea Joan-Emma
Diversity of kinetic pathways in amyloid fibril formation.
Armstrong Brandon D; Soto Patricia; Shea Joan-Emma; Han Songi
Overhauser dynamic nuclear polarization and molecular dynamics simulations using pyrroline and piperidine ring nitroxide radicals.
Bellesia Giovanni; Shea Joan-Emma
Effect of beta-sheet propensity on peptide aggregation.

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All Publications

2009: Bellesia Giovanni; Shea Joan-Emma
Diversity of kinetic pathways in amyloid fibril formation.
The Journal of chemical physics 2009;131(11):111102.
2009: Armstrong Brandon D; Soto Patricia; Shea Joan-Emma; Han Songi
Overhauser dynamic nuclear polarization and molecular dynamics simulations using pyrroline and piperidine ring nitroxide radicals.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2009;200(1):137-41.
2009: Bellesia Giovanni; Shea Joan-Emma
Effect of beta-sheet propensity on peptide aggregation.
The Journal of chemical physics 2009;130(14):145103.
2009: Murray Megan M; Krone Mary Griffin; Bernstein Summer L; Baumketner Andrij; Condron Margaret M; Lazo Noel D; Teplow David B; Wyttenbach Thomas; Shea Joan-Emma; Bowers Michael T
Amyloid beta-protein: experiment and theory on the 21-30 fragment.
The journal of physical chemistry. B 2009;113(17):6041-6.
2009: Wu Chun; Murray Megan M; Bernstein Summer L; Condron Margaret M; Bitan Gal; Shea Joan-Emma; Bowers Michael T
The structure of Abeta42 C-terminal fragments probed by a combined experimental and theoretical study.
Journal of molecular biology 2009;387(2):492-501.
2009: Bellesia Giovanni; Shea Joan-Emma
What determines the structure and stability of KFFE monomers, dimers, and protofibrils?
Biophysical journal 2009;96(3):875-86.
2009: Zhuang Zhuoyun; Jewett Andrew I; Soto Patricia; Shea Joan-Emma
The effect of surface tethering on the folding of the src-SH3 protein domain.
Physical biology 2009;6(1):15004.
2008: Wu Chun; Wang Zhixiang; Lei Hongxing; Duan Yong; Bowers Michael T; Shea Joan-Emma
The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations.
Journal of molecular biology 2008;384(3):718-29.
2008: Krone Mary Griffin; Hua Lan; Soto Patricia; Zhou Ruhong; Berne B J; Shea Joan-Emma
Role of water in mediating the assembly of Alzheimer amyloid-beta Abeta16-22 protofilaments.
Journal of the American Chemical Society 2008;130(33):11066-72.
2008: Krone Mary Griffin; Baumketner Andrij; Bernstein Summer L; Wyttenbach Thomas; Lazo Noel D; Teplow David B; Bowers Michael T; Shea Joan-Emma
Effects of familial Alzheimer's disease mutations on the folding nucleation of the amyloid beta-protein.
Journal of molecular biology 2008;381(1):221-8.
2008: Penev Evgeni; Ireta Joel; Shea Joan-Emma
Energetics of infinite homopolypeptide chains: a new look at commonly used force fields.
The journal of physical chemistry. B 2008;112(22):6872-7.
2008: Baumketner Andrij; Krone Mary Griffin; Shea Joan-Emma
Role of the familial Dutch mutation E22Q in the folding and aggregation of the 15-28 fragment of the Alzheimer amyloid-beta protein.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(16):6027-32.
2008: Jewett A I; Shea J-E
Do chaperonins boost protein yields by accelerating folding or preventing aggregation?
Biophysical journal 2008;94(8):2987-93.
2008: Bellesia Giovanni; Lampoudi Sotiria; Shea Joan-Emma
Computational methods in nanostructure design: replica exchange simulations of self-assembling peptides.
Methods in molecular biology (Clifton, N.J.) 2008;474():133-51.
2008: Bellesia Giovanni; Shea Joan-Emma
Structure and stability of amyloid fibrils formed from synthetic beta-peptides.
Frontiers in bioscience : a journal and virtual library 2008;13():6957-65.
2007: Soto Patricia; Griffin Mary A; Shea Joan-Emma
New insights into the mechanism of Alzheimer amyloid-beta fibrillogenesis inhibition by N-methylated peptides.
Biophysical journal 2007;93(9):3015-25.
2007: Bellesia Giovanni; Shea Joan-Emma
Self-assembly of beta-sheet forming peptides into chiral fibrillar aggregates.
The Journal of chemical physics 2007;126(24):245104.
2007: Kamiya Narutoshi; Mitomo Daisuke; Shea Joan-Emma; Higo Junichi
Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one.
The journal of physical chemistry. B 2007;111(19):5351-6.
2007: Friedel Miriam; Baumketner Andrij; Shea Joan-Emma
Stability of a protein tethered to a surface.
The Journal of chemical physics 2007;126(9):095101.
2007: Baumketner Andrij; Shea Joan-Emma
The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.
Journal of molecular biology 2007;366(1):275-85.
2007: Zhuang Zhuoyun; Jaeger Luc; Shea Joan-Emma
Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin.
Nucleic acids research 2007;35(20):6995-7002.
2006: Jewett A I; Shea J-E
Folding on the chaperone: yield enhancement through loose binding.
Journal of molecular biology 2006;363(5):945-57.
2006: Teplow David B; Lazo Noel D; Bitan Gal; Bernstein Summer; Wyttenbach Thomas; Bowers Michael T; Baumketner Andrij; Shea Joan-Emma; Urbanc Brigita; Cruz Luis; Borreguero Jose; Stanley H Eugene
Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach.
Accounts of chemical research 2006;39(9):635-45.
2006: Baumketner Andrij; Shea Joan-Emma
Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide.
Journal of molecular biology 2006;362(3):567-79.
2006: Wei Guanghong; Shea Joan-Emma
Effects of solvent on the structure of the Alzheimer amyloid-beta(25-35) peptide.
Biophysical journal 2006;91(5):1638-47.
2006: Baumketner Andrij; Bernstein Summer L; Wyttenbach Thomas; Lazo Noel D; Teplow David B; Bowers Michael T; Shea Joan-Emma
Structure of the 21-30 fragment of amyloid beta-protein.
Protein science : a publication of the Protein Society 2006;15(6):1239-47.
2006: Friedel Miriam; Baumketner Andrij; Shea Joan-Emma
Effects of surface tethering on protein folding mechanisms.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(22):8396-401.
2006: Soto Patricia; Baumketner Andrij; Shea Joan-Emma
Aggregation of polyalanine in a hydrophobic environment.
The Journal of chemical physics 2006;124(13):134904.
2006: Baumketner Andrij; Bernstein Summer L; Wyttenbach Thomas; Bitan Gal; Teplow David B; Bowers Michael T; Shea Joan-Emma
Amyloid beta-protein monomer structure: a computational and experimental study.
Protein science : a publication of the Protein Society 2006;15(3):420-8.
2005: Guo Weihua; Shea Joan-Emma; Berry R Stephen
The physics of the interactions governing folding and association of proteins.
Annals of the New York Academy of Sciences 2005;1066():34-53.
2005: Baumketner Andrij; Shea Joan-Emma
The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.
The journal of physical chemistry. B 2005;109(45):21322-8.
2005: Griffin Mary A; Friedel Miriam; Shea Joan-Emma
Effects of frustration, confinement, and surface interactions on the dimerization of an off-lattice beta-barrel protein.
The Journal of chemical physics 2005;123(17):174707.
2005: Baumketner A; Shea J-E
Free energy landscapes for amyloidogenic tetrapeptides dimerization.
Biophysical journal 2005;89(3):1493-503.
2005: Ding Feng; Guo Weihua; Dokholyan Nikolay V; Shakhnovich Eugene I; Shea Joan-Emma
Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations.
Journal of molecular biology 2005;350(5):1035-50.
2005: Bernstein Summer L; Wyttenbach Thomas; Baumketner Andrij; Shea Joan-Emma; Bitan Gal; Teplow David B; Bowers Michael T
Amyloid beta-protein: monomer structure and early aggregation states of Abeta42 and its Pro19 alloform.
Journal of the American Chemical Society 2005;127(7):2075-84.
2004: Jewett A I; Baumketner A; Shea J-E
Accelerated folding in the weak hydrophobic environment of a chaperonin cavity: creation of an alternate fast folding pathway.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(36):13192-7.
2004: Baumketner A; Shea J-E; Hiwatari Y
Improved theoretical description of protein folding kinetics from rotations in the phase space of relevant order parameters.
The Journal of chemical physics 2004;121(2):1114-20.
2004: Guo Weihua; Lampoudi Sotiria; Shea Joan-Emma
Temperature dependence of the free energy landscape of the src-SH3 protein domain.
Proteins 2004;55(2):395-406.
2004: Friedel Miriam; Shea Joan-Emma
Self-assembly of peptides into a beta-barrel motif.
The Journal of chemical physics 2004;120(12):5809-23.
2003: Baumketner A; Shea J-E
Kinetics of the coil-to-helix transition on a rough energy landscape.
Physical review. E, Statistical, nonlinear, and soft matter physics 2003;68(5 Pt 1):051901.
2003: Baumketner A; Jewett A; Shea J E
Effects of confinement in chaperonin assisted protein folding: rate enhancement by decreasing the roughness of the folding energy landscape.
Journal of molecular biology 2003;332(3):701-13.
2003: Guo Weihua; Lampoudi Sotiria; Shea Joan-Emma
Posttransition state desolvation of the hydrophobic core of the src-SH3 protein domain.
Biophysical journal 2003;85(1):61-9.
2003: Baumketner A; Shea J-E; Hiwatari Y
Glass transition in an off-lattice protein model studied by molecular dynamics simulations.
Physical review. E, Statistical, nonlinear, and soft matter physics 2003;67(1 Pt 1):011912.
2002: Shea Joan-Emma; Onuchic Jose N; Brooks Charles L
Probing the folding free energy landscape of the Src-SH3 protein domain.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(25):16064-8.

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