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Jay Shendure

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TOP 3
Matthew W Snyder; Lavone E Simmons; Hilary S Gammill; Jacob O Kitzman; Donna A Santillan; Mark K Santillan; Jay Shendure
Noninvasive fetal genome sequencing: a primer.
Joseph B Hiatt; Brian J O'Roak; Colin C Pritchard; Stephen J Salipante; Jay Shendure
Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation.
Xinxian Deng; Joel B Berletch; Joseph B Hiatt; Wenxiu Ma; Di Kim Nguyen; William S Noble; Jay Shendure; Christine M Disteche
Mammalian X Upregulation Is Associated with Enhanced Transcription Initiation, RNA Half-Life, and MOF-Mediated H4K16 Acetylation.

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All Publications

2013: Matthew W Snyder; Lavone E Simmons; Hilary S Gammill; Jacob O Kitzman; Donna A Santillan; Mark K Santillan; Jay Shendure
Noninvasive fetal genome sequencing: a primer.
Prenatal diagnosis 2013;33(6):547-54.
2013: Joseph B Hiatt; Brian J O'Roak; Colin C Pritchard; Stephen J Salipante; Jay Shendure
Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation.
Genome research 2013;23(5):843-54.
2013: Xinxian Deng; Joel B Berletch; Joseph B Hiatt; Wenxiu Ma; Di Kim Nguyen; William S Noble; Jay Shendure; Christine M Disteche
Mammalian X Upregulation Is Associated with Enhanced Transcription Initiation, RNA Half-Life, and MOF-Mediated H4K16 Acetylation.
Developmental cell 2013;25(1):55-68.
2013: Bobby G Ng; Deborah A Nickerson; Marc C Patterson; Kimiyo Raymond; Jay Shendure; Joshua D Smith; Marta Szybowska; Emily H Turner; Michael J Bamshad; Kati J Buckingham; Jessica X Chong; Alexey Eroshkin; Rodney David Gilbert; Miao He; Martin Kircher; Mariya Kozenko; Chumei Li; Marie E Losfeld; Hudson H Freeze
Mosaicism of the UDP-galactose transporter SLC35A2 causes a congenital disorder of glycosylation.
American journal of human genetics 2013;92(4):632-6.
2013: Alexander G Marneros; Margaret J McMillin; Deborah A Nickerson; Ana Beatriz A Perez; Ghislaine Plessis; Ernst Reichenberger; Jay Shendure; Kathryn M Shively; Joshua D Smith; Holly K Tabor; Emily H Turner; Jeanne Amiel; Michael J Bamshad; Anita E Beck; Felecia Cerrato; Nara Lygia de Macena Sobreira; Matthew J Edwards; Michael Field; Jose A R Fortes; Maria Luisa Giovannucci Uzielli; Christopher T Gordon; Brian I Labow; Anne K Lampe; Martine Le Merrer
Mutations in KCTD1 cause scalp-ear-nipple syndrome.
American journal of human genetics 2013;92(4):621-6.
2013: Lea M Starita; Russell S Lo; Jonathan N Pruneda; Jay Shendure; Peter S Brzovic; Stanley Fields; Douglas M Fowler; Joseph B Hiatt; Helen J Kim; Rachel E Klevit
Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(14):E1263-72.
2013: Jay Shendure
2012 Curt Stern Award address.
American journal of human genetics 2013;92(3):340-4.
2013: Jennifer Below; David Chitayat; Daniel H Cohn; Dawn L Earl; Elaine M Faustman; Jozef L Hertecant; Deborah Krakow; Margaret J McMillin; Deborah A Nickerson; Jay Shendure; Kathryn M Shively; Joshua D Smith; Mark J Stephan; James M Swanson; Emily H Turner; Sheila Unger; Lihadh I Al-Gazali; Michael Bamshad
Whole-genome analysis reveals that mutations in inositol polyphosphate phosphatase-like 1 cause opsismodysplasia.
American journal of human genetics 2013;92(1):137-43.
2013: Michael R Knowles; Margaret W Leigh; Alexandra P Lewis; Carlos E Milla; Deborah A Nickerson; Kenneth N Olivier; Lawrence E Ostrowski; Margaret Rosenfeld; Scott D Sagel; Jay Shendure; Emily H Turner; Weining Yin; Maimoona A Zariwala; Michael Bamshad; Jonathan S Berg; Johnny L Carson; Stephanie D Davis; Sharon D Dell; Thomas Ferkol; Milan J Hazucha; Lu Huang
Exome sequencing identifies mutations in CCDC114 as a cause of primary ciliary dyskinesia.
American journal of human genetics 2013;92(1):99-106.
2013: Margaret J McMillin; Heather C Mefford; Sarju G Mehta; Deborah A Nickerson; Jason Pinner; Stephen P Robertson; Jay Shendure; Kathryn M Shively; James M Swanson; Michael Bamshad; Anita E Beck; Jennifer Below; Dawn L Earl; Elaine M Faustman; Heidi I Gildersleeve; Gloria R Gogola; Dorothy K Grange; David J Harris; Jacqueline T Hecht; Sujatha Jagadeesh
Mutations in ECEL1 cause distal arthrogryposis type 5D.
American journal of human genetics 2013;92(1):150-6.
2013: Wenqing Fu; Stacey Gabriel; Goo Jun; Hyun Min Kang; Suzanne M Leal; Deborah A Nickerson; Timothy D O'Connor; Jay Shendure; Mark J Rieder; Goncalo Abecasis; David Altshuler; Michael Bamshad; Joshua M Akey
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.
Nature 2013;493(7431):216-20.
2012: Brian J O'Roak; Ian G Phelps; Ian B Stanaway; Emily H Turner; Laura Vives; Joshua M Akey; Katy Ankenman; Raphael Bernier; Elhanan Borenstein; Gemma Carvill; Bradley P Coe; Dan Doherty; Jarrett D Egertson; Evan E Eichler; Wenqing Fu; Joseph B Hiatt; Niklas Krumm; Akash Kumar; Choli Lee; Roie Levy; Beth K Martin; Heather C Mefford; Jeff Munson; Deborah A Nickerson; Diana R O'Day; Jay Shendure
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
Science (New York, N.Y.) 2012;338(6114):1619-22.
2012: Gabriel B Loeb; Jay Shendure; David Canner; Robert B Darnell; Joseph B Hiatt; Aly A Khan; Christina S Leslie; Alexander Y Rudensky
Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting.
Molecular cell 2012;48(5):760-70.
2012: Jerrod J Schwartz; Andrew Adey; Joseph B Hiatt; Choli Lee; Jay Shendure
Capturing native long-range contiguity by in situ library construction and optical sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(46):18749-54.
2012: Jay Shendure; Erez Lieberman Aiden
The expanding scope of DNA sequencing.
Nature biotechnology 2012;30(11):1084-94.
2012: Brad Stone; Hywel Jones; Arnold Kas; Crystal A Rawlings; Mary Rieck; Jay Shendure; Jane H Buckner
Identification of novel HLA class II target epitopes for generation of donor-specific T regulatory cells.
Clinical immunology (Orlando, Fla.) 2012;145(2):153-60.
2012: Catarina D Campbell; Jessica X Chong; Beth L Dumont; Mark Abney; Lide Han; Arthur Ko; Maika Malig; Carole Ober; Brian J O'Roak; Jay Shendure; Peter H Sudmant; Laura Vives; Evan E Eichler
Estimating the human mutation rate using autozygosity in a founder population.
Nature genetics 2012;44(11):1277-81.
2012: Zhijun Duan; Stanley Fields; Choli Lee; William S Noble; Kevin Schutz; Jay Shendure; Mirela Andronescu; C Anthony Blau
A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes.
Methods (San Diego, Calif.) 2012;58(3):277-88.
2012: Amjad Horani; Michael R Knowles; Margaret W Leigh; Benjamin T Levinson; Deborah A Nickerson; Anand C Patel; Jay Shendure; Katherine C Thornton; Emily H Turner; Laura G Van Arendonk; Kate S Wilson; Maimoona A Zariwala; Alison J Albee; Philip V Bayly; Steven L Brody; Todd E Druley; Susan Dutcher; Joe C Giacalone; Thomas Ferkol
Whole-exome capture and sequencing identifies HEATR2 mutation as a cause of primary ciliary dyskinesia.
American journal of human genetics 2012;91(4):685-93.
2012: Holly K Tabor; Mario Ventura; LaVone E Simmons; Matthew W Snyder; Michael Bamshad; Edith Y Cheng; Evan E Eichler; Hilary S Gammill; Jacob O Kitzman; Alexandra P Lewis; Jeffrey C Murray; Ruolan Qiu; Craig E Rubens; Mark K Santillan; Jay Shendure
Non-invasive fetal genome sequencing: opportunities and challenges.
American journal of medical genetics. Part A 2012;158A(10):2382-4.
2012: Jerrod J Schwartz; Choli Lee; Jay Shendure
Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules.
Nature methods 2012;9(9):913-5.
2012: Nels C Elde; Adam P Geballe; Jacob O Kitzman; Stephanie J Child; Michael T Eickbush; Kelsey S Rogers; Jay Shendure; Harmit S Malik
Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses.
Cell 2012;150(4):831-41.
2012: catherine boileau; Alan C Braverman; Delphine Detaint; Hyacintha d'Indy; Limin Gong; Laurent Gouya; Bernard Grandchamp; Marie-Sylvie Gross; Dong-Chuan Guo; Nadine Hanna; Guillaume Jondeau; Callie S Kwartler; Suzanne M Leal; Alexander H Li; Jean Baptiste Michel; Christine Muti; Deborah A Nickerson; Siddharth K Prakash; Ellen S Regalado; Mark J Rieder; Regie Lyn P Santos-Cortez; Jay Shendure; Alec Vahanian; Mathilde Varret; Marianne Abifadel; Dianna M Milewicz
TGFB2 mutations cause familial thoracic aortic aneurysms and dissections associated with mild systemic features of Marfan syndrome.
Nature genetics 2012;44(8):916-21.
2012: Jacob O Kitzman; Alexandra P Lewis; Jeffrey C Murray; Ruolan Qiu; Craig E Rubens; Donna A Santillan; Lavone E Simmons; Matthew W Snyder; Holly K Tabor; Mario Ventura; Michael J Bamshad; Evan E Eichler; Hilary S Gammill; Jay Shendure
Noninvasive whole-genome sequencing of a human fetus.
Science translational medicine 2012;4(137):137ra76.
2012: Holly K Tabor; Joon-Ho Yu; Tracy Brazg; Karin M Dent; Margaret J McMillin; Jay Shendure; Jacquie Stock; Michael J Bamshad
Informed consent for whole genome sequencing: a qualitative analysis of participant expectations and perceptions of risks, benefits, and harms.
American journal of medical genetics. Part A 2012;158A(6):1310-9.
2012: Andrew Adey; Jay Shendure
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.
Genome research 2012;22(6):1139-43.
2012: Brian J O'Roak; Beau Reilly; Mark J Rieder; Jay Shendure; Joshua D Smith; Ian B Stanaway; Emily H Turner; Benjamin Vernot; Laura Vives; Santhosh Girirajan; Emre Karakoc; Arthur Ko; Niklas Krumm; Choli Lee; Roie Levy; Maika Malig; Deborah A Nickerson; Joshua M Akey; Carl Baker; Raphael Bernier; Elhanan Borenstein; Bradley P Coe; Evan E Eichler
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Nature 2012;485(7397):246-50.
2012: Isaac S Kohane; Jay Shendure
What's a Genome Worth?
Science translational medicine 2012;4(133):133fs13.
2012: Francois P Bernier; Kati J Buckingham; Peter H Byers; Oana Caluseriu; Bridget A Fernandez; Jerome L Gorski; A Micheil Innes; Jeffrey W Innis; Ethylin Jabs; Julie Lauzon; Jacek Majewski; Margaret McMillin; Sarah Ng; Deborah A Nickerson; Hilary Racher; Jane L Schuette; Jeremy Schwartzentruber; Richard H Scott; Jay Shendure; Victoria Mok Siu; Gregor Andelfinger; Michael Bamshad; Jillian S Parboosingh
Haploinsufficiency of SF3B4, a component of the pre-mRNA spliceosomal complex, causes Nager syndrome.
American journal of human genetics 2012;90(5):925-33.
2012: Rupali P Patwardhan; Len A Pennacchio; Robin P Smith; Daniela M Witten; Nadav Ahituv; Jennifer M Andrie; Gregory M Cooper; Joseph B Hiatt; Mee J Kim; Choli Lee; Su-In Lee; Dalit May; Jay Shendure
Massively parallel functional dissection of mammalian enhancers in vivo.
Nature biotechnology 2012;30(3):265-70.
2012: Brian D Hondowicz; Arnold Kas; Martin McIntosh; Nirasha Ramchurren; Crystal Rawlings; Srinath Sanda; Katharine V Schwedhelm; Jay Shendure; Nathan E Standifer; Leonard A D'Amico; Michael A Tasch; Brad Stone
Discovery of T cell antigens by high-throughput screening of synthetic minigene libraries.
PloS one 2012;7(1):e29949.
2011: Xinxian Deng; Carrie A Davis; Sevinc Ercan; Thomas R Gingeras; Joseph B Hiatt; LaDeana W Hillier; Jason D Lieb; Di Kim Nguyen; Brian Oliver; Valerie J Reinke; Felix Schlesinger; Jay Shendure; David Sturgill; Robert H Waterston; Christine M Disteche
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.
Nature genetics 2011;43(12):1179-85.
2011: Michael J Bamshad; Abigail W Bigham; Mary J Emond; Sarah B Ng; Deborah A Nickerson; Holly K Tabor; Jay Shendure
Exome sequencing as a tool for Mendelian disease gene discovery.
Nature reviews. Genetics 2011;12(11):745-55.
2011: Akash Kumar; Paul H Lange; Choli Lee; Alexandra P MacKenzie; Colm Morrissey; Peter S Nelson; Sarah B Ng; Deborah A Nickerson; Mark J Rieder; Stephen J Salipante; Nigel Clegg; Ilsa Coleman; Eva Corey; Ruth F Dumpit; Robert L Vessella; Thomas A White; Jay Shendure
Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(41):17087-92.
2011: Renee D George; Alexandra P MacKenzie; Graham McVicker; Sarah B Ng; Jay Shendure; Willie J Swanson; Rachel Diederich; James H Thomas
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.
Genome research 2011;21(10):1686-94.
2011: Mario Ventura; Richard K Wilson; Can Alkan; Nicoletta Archidiacono; Carl Baker; Claudia R Catacchio; Lin Chen; Tina Graves; Fereydoun Hormozdiari; Jeffrey M Kidd; Choli Lee; Maika Malig; Tomas Marques-Bonet; Arcadi Navarro; Saba Sajjadian; Jay Shendure; Emily H Turner; Evan E Eichler
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.
Genome research 2011;21(10):1640-9.
2011: Ellen S Regalado; Mark J Rieder; Regie L Santos-Cortez; Jay Shendure; Carlos Villamizar; Deborah A Nickerson; Nili Avidan; Francois Bernier; Aida M Bertoli Avella; Lorne Clarke; Dawna Gilchrist; Dong-Chuan Guo; Suzanne M Leal; Barbara McGillivray; Dianna M Milewicz
Exome sequencing identifies SMAD3 mutations as a cause of familial thoracic aortic aneurysm and dissection with intracranial and other arterial aneurysms.
Circulation research 2011;109(6):680-6.
2011: Gregory M Cooper; Jay Shendure
Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data.
Nature reviews. Genetics 2011;12(9):628-40.
2011: Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.
Nature genetics 2011;43(6):585-9.
2011: Valliammai Muthappan; Aaron Y Lee; Tamara L Lamprecht; Lakshmi Akileswaran; Suzanne M Dintzis; Choli Lee; vincent magrini; Elaine R Mardis; Jay Shendure; Russell N Van Gelder
Biome representational in silico karyotyping.
Genome research 2011;21(4):626-33.
2011: Jay Shendure
Next-generation human genetics.
Genome biology 2011;12(9):408.
2011: Akash Kumar; Jay Shendure; Peter S Nelson
Genome interrupted: sequencing of prostate cancer reveals the importance of chromosomal rearrangements.
Genome medicine 2011;3(4):23.
2011: Larry A Gallagher; Jay Shendure; Colin Manoil
Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq.
mBio 2011;2(1):e00315-10.
2011: Jacob O Kitzman; Alexandra P Mackenzie; Andrew Adey; Joseph B Hiatt; Rupali P Patwardhan; Peter H Sudmant; Sarah B Ng; Can Alkan; Ruolan Qiu; Evan E Eichler; Jay Shendure
Haplotype-resolved genome sequencing of a Gujarati Indian individual.
Nature biotechnology 2011;29(1):59-63.
2010: Jonathan Rios; Evan Stein; Jay Shendure; Helen H Hobbs; Jonathan C Cohen
Identification by whole-genome resequencing of gene defect responsible for severe hypercholesterolemia.
Human molecular genetics 2010;19(22):4313-8.
2010: Peter H Sudmant; Jacob O Kitzman; Francesca Antonacci; Can Alkan; Maika Malig; Anya Tsalenko; Nick Sampas; Laurakay Bruhn; Jay Shendure; Evan E Eichler
Diversity of human copy number variation and multicopy genes.
Science (New York, N.Y.) 2010;330(6004):641-6.
2010: Sarah B Ng; Deborah A Nickerson; Michael J Bamshad; Jay Shendure
Massively parallel sequencing and rare disease.
Human molecular genetics 2010;19(R2):R119-24.
2010: Sarah B Ng; Abigail W Bigham; Kati J Buckingham; Mark C Hannibal; Margaret J McMillin; Heidi I Gildersleeve; Anita E Beck; Holly K Tabor; Gregory M Cooper; Heather C Mefford; Choli Lee; Emily H Turner; Joshua D Smith; Mark J Rieder; Koh-ichiro Yoshiura; Naomichi Matsumoto; Tohru Ohta; Norio Niikawa; Deborah A Nickerson; Michael J Bamshad; Jay Shendure
Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome.
Nature genetics 2010;42(9):790-3.
2010: Catherine Igartua; Emily H Turner; Sarah B Ng; Emily Hodges; Gregory J Hannon; Arindam Bhattacharjee; Mark J Rieder; Deborah A Nickerson; Jay Shendure
Targeted enrichment of specific regions in the human genome by array hybridization.
Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.] 2010;Chapter 18():Unit 18.3.
2010: Zhijun Duan; Mirela Andronescu; Kevin Schutz; Sean McIlwain; Yoo Jung Kim; Choli Lee; Jay Shendure; Stanley Fields; C Anthony Blau; William S Noble
A three-dimensional model of the yeast genome.
Nature 2010;465(7296):363-7.
2010: Fan Yang; Tomas Babak; Jay Shendure; Christine M Disteche
Global survey of escape from X inactivation by RNA-sequencing in mouse.
Genome research 2010;20(5):614-22.
2010: Jared C Roach; Gustavo Glusman; Arian F A Smit; Chad D Huff; Robert Hubley; Paul T Shannon; Lee Rowen; Krishna P Pant; Nathan Goodman; Michael Bamshad; Jay Shendure; Radoje Drmanac; Lynn B Jorde; Leroy Hood; David J Galas
Analysis of genetic inheritance in a family quartet by whole-genome sequencing.
Science (New York, N.Y.) 2010;328(5978):636-9.
2010: Gregory Cooper; David L Goode; Sarah B Ng; Arend Sidow; Michael J Bamshad; Jay Shendure; Deborah A Nickerson
Single-nucleotide evolutionary constraint scores highlight disease-causing mutations.
Nature methods 2010;7(4):250-1.
2010: Lira Mamanova; Alison J Coffey; Carol E Scott; Iwanka Kozarewa; Emily H Turner; Akash Kumar; Eleanor Howard; Jay Shendure; Daniel J Turner
Target-enrichment strategies for next-generation sequencing.
Nature methods 2010;7(2):111-8.
2010: Joseph B Hiatt; Rupali P Patwardhan; Emily H Turner; Choli Lee; Jay Shendure
Parallel, tag-directed assembly of locally derived short sequence reads.
Nature methods 2010;7(2):119-22.
2010: Jay Shendure
Journal club. A geneticist discusses a way to assess the effects of disease-causing gene mutations.
Nature 2010;463(7280):405.
2010: Andrew Adey; Hilary G Morrison; Xu Xun; Jacob O Kitzman; Emily H Turner; Bethany Stackhouse; Alexandra P MacKenzie; Nicholas C Caruccio; Xiuqing Zhang; Jay Shendure
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.
Genome biology 2010;11(12):R119.
2010: Sarah B Ng; Kati J Buckingham; Choli Lee; Abigail W Bigham; Holly K Tabor; Karin M Dent; Chad D Huff; Paul T Shannon; Ethylin Jabs; Deborah A Nickerson; Jay Shendure; Michael J Bamshad
Exome sequencing identifies the cause of a mendelian disorder.
Nature genetics 2010;42(1):30-5.
2009: Rupali P Patwardhan; Choli Lee; Oren Litvin; David L Young; Dana Pe'er; Jay Shendure
High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Nature biotechnology 2009;27(12):1173-5.
2009: Sarah B Ng; Emily H Turner; Peggy D Robertson; Steven D Flygare; Abigail W Bigham; Choli Lee; Tristan Shaffer; Michelle Wong; Arindam Bhattacharjee; Evan E Eichler; Michael Bamshad; Deborah A Nickerson; Jay Shendure
Targeted capture and massively parallel sequencing of 12 human exomes.
Nature 2009;461(7261):272-6.
2009: Jay Shendure; Colin J Stewart
Cancer genomes on a shoestring budget.
The New England journal of medicine 2009;360(26):2781-3.
2009: Zoran Brkanac; David Spencer; Jay Shendure; Peggy D Robertson; Mark Matsushita; Tiffany Vu; Thomas D Bird; Maynard V Olson; Wendy H Raskind
IFRD1 is a candidate gene for SMNA on chromosome 7q22-q23.
American journal of human genetics 2009;84(5):692-7.
2009: Emily H Turner; Choli Lee; Sarah B Ng; Deborah A Nickerson; Jay Shendure
Massively parallel exon capture and library-free resequencing across 16 genomes.
Nature methods 2009;6(5):315-6.
2009: James H Thomas; Ryan O Emerson; Jay Shendure
Extraordinary molecular evolution in the PRDM9 fertility gene.
PloS one 2009;4(12):e8505.
2009: Valeria Vasta; Sarah B Ng; Emily H Turner; Jay Shendure; Si Houn Hahn
Next generation sequence analysis for mitochondrial disorders.
Genome medicine 2009;1(10):100.
2009: Emily H Turner; Sarah B Ng; Deborah A Nickerson; Jay Shendure
Methods for genomic partitioning.
Annual review of genomics and human genetics 2009;10():263-84.
2008: Jay Shendure; Hanlee Ji
Next-generation DNA sequencing.
Nature biotechnology 2008;26(10):1135-45.
2008: Jay Shendure
The beginning of the end for microarrays?
Nature methods 2008;5(7):585-7.
2007: Gregory J Porreca; Kun Zhang; Jin Billy Li; Bin Xie; Derek Austin; Sara L Vassallo; Emily M LeProust; Bill J Peck; Christopher J Emig; Fredrik Dahl; Yuan Gao; George M Church; Jay Shendure
Multiplex amplification of large sets of human exons.
Nature methods 2007;4(11):931-6.
2007: Ivan P G Moskowitz; Jae B Kim; Meredith L Moore; Cordula M Wolf; Michael A Peterson; Jay Shendure; Marcelo A Nobrega; Yoshifumi Yokota; Charles I Berul; Seigo Izumo; Jonathan G Seidman; Christine E Seidman
A molecular pathway including Id2, Tbx5, and Nkx2-5 required for cardiac conduction system development.
Cell 2007;129(7):1365-76.
2006: Gregory J Porreca; Jay Shendure; George M Church
Polony DNA sequencing.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2006;Chapter 7():Unit 7.8.
2006: Daniel J Turner; Jay Shendure; Gregory J Porreca; George M Church; Peter Green; Chris Tyler-Smith; Matthew E Hurles
Assaying chromosomal inversions by single-molecule haplotyping.
Nature methods 2006;3(6):439-45.
2006: Kun Zhang; Jun Zhu; Jay Shendure; Gregory J Porreca; John Aach; Robi D Mitra; George M Church
Long-range polony haplotyping of individual human chromosome molecules.
Nature genetics 2006;38(3):382-7.
2006: George M Church; Jay Shendure; Gregory J Porreca
Sequencing thoroughbreds.
Nature biotechnology 2006;24(2):139.
2005: Jay Shendure; Gregory J Porreca; Nikos B Reppas; Xiaoxia Lin; John P McCutcheon; Abraham M Rosenbaum; Michael D Wang; Kun Zhang; Robi D Mitra; George M Church
Accurate multiplex polony sequencing of an evolved bacterial genome.
Science (New York, N.Y.) 2005;309(5741):1728-32.
2005: Zhou Zhu; Jay Shendure; George M Church
Discovering functional transcription-factor combinations in the human cell cycle.
Genome research 2005;15(6):848-55.
2004: Jay Shendure; Robi D Mitra; Chris Varma; George M Church
Advanced sequencing technologies: methods and goals.
Nature reviews. Genetics 2004;5(5):335-44.
2003: Robi D Mitra; Jay Shendure; Jerzy Olejnik; George M Church
Fluorescent in situ sequencing on polymerase colonies.
Analytical biochemistry 2003;320(1):55-65.
2003: Jun Zhu; Jay Shendure; Robi D Mitra; George M Church
Single molecule profiling of alternative pre-mRNA splicing.
Science (New York, N.Y.) 2003;301(5634):836-8.
2003: Robi D Mitra; Vincent Butty; Jay Shendure; Benjamin R Williams; David E Housman; George M Church
Digital genotyping and haplotyping with polymerase colonies.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(10):5926-31.
2002: Jay Shendure; George M Church
Computational discovery of sense-antisense transcription in the human and mouse genomes.
Genome biology 2002;3(9):RESEARCH0044.
2002: Griffin Weber; Jay Shendure; David M Tanenbaum; George M Church; Matthew Meyerson
Identification of foreign gene sequences by transcript filtering against the human genome.
Nature genetics 2002;30(2):141-2.
2001: V Badarinarayana; PW Estep; Jay Shendure; J Edwards; Sohail F Tavazoie; F Lam; George M Church
Selection analyses of insertional mutants using subgenic-resolution arrays.
Nature biotechnology 2001;19(11):1060-5.
2001: John Aach; Martha L Bulyk; George M Church; J Comander; Adnan Derti; Jay Shendure
Computational comparison of two draft sequences of the human genome.
Nature 2001;409(6822):856-9.