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Ko Shimamoto

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Hiroyuki Tsuji; Ken-ichiro Taoka; Hiroyuki Nakamura; Ko Shimamoto
Functional diversification of FD transcription factors in rice, components of florigen activation complexes.
Sung-Hyun Kim; Mitsuko Kishi-Kaboshi; Junko Kyozuka; Tetsuo Oikawa; Yoji Kawano; Tsutomu Kawasaki; Akira Takahashi; Kenji Umemura; Hann Ling Wong; Ko Shimamoto
The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.
Ryo Ishikawa; Mayumi Aoki; Ken-Ichi Kurotani; Shuji Yokoi; Tomoko Shinomura; Makoto Takano; Ko Shimamoto
Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.

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All Publications

2013: Hiroyuki Tsuji; Ken-ichiro Taoka; Hiroyuki Nakamura; Ko Shimamoto
Functional diversification of FD transcription factors in rice, components of florigen activation complexes.
Plant & cell physiology 2013;54(3):385-97.
2012: Sung-Hyun Kim; Mitsuko Kishi-Kaboshi; Junko Kyozuka; Tetsuo Oikawa; Yoji Kawano; Tsutomu Kawasaki; Akira Takahashi; Kenji Umemura; Hann Ling Wong; Ko Shimamoto
The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.
Plant & cell physiology 2012;53(4):740-54.
2011: Ryo Ishikawa; Mayumi Aoki; Ken-Ichi Kurotani; Shuji Yokoi; Tomoko Shinomura; Makoto Takano; Ko Shimamoto
Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.
Molecular genetics and genomics : MGG 2011;285(6):461-70.
2011: Yasuyuki Takahashi; Ko Shimamoto
Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice.
Genes & genetic systems 2011;86(3):175-82.
2010: Yoji Kawano; Akira Akamatsu; Keiko Hayashi; Yusuke Housen; Jun Okuda; Ai Yao; Ayako Nakashima; Hiroki Takahashi; Hitoshi Yoshida; Hann Ling Wong; Tsutomu Kawasaki; Ko Shimamoto
Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity.
Cell host & microbe 2010;7(5):362-75.
2010: Letian Chen; Kenji Shiotani; Takashi Togashi; Daisuke Miki; Misa Aoyama; Hann Ling Wong; Tsutomu Kawasaki; Ko Shimamoto
Analysis of the Rac/Rop small GTPase family in rice: expression, subcellular localization and role in disease resistance.
Plant & cell physiology 2010;51(4):585-95.
2010: Letian Chen; Satoshi Hamada; Masayuki Fujiwara; Tingheng Zhu; Nguyen Phuong Thao; Hann Ling Wong; Priti Krishna; Takashi Ueda; Hanae Kaku; Naoto Shibuya; Tsutomu Kawasaki; Ko Shimamoto
The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity.
Cell host & microbe 2010;7(3):185-96.
2009: Reina Komiya; Shuji Yokoi; Ko Shimamoto
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.
Development (Cambridge, England) 2009;136(20):3443-50.
2009: Ryo Ishikawa; Tomoko Shinomura; Makoto Takano; Ko Shimamoto
Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering.
Genes & genetic systems 2009;84(2):179-84.
2009: Yasuyuki Takahashi; Kosuke M Teshima; Shuji Yokoi; Hideki Innan; Ko Shimamoto
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(11):4555-60.
2009: Yekti Asih Purwestri; Yuka Ogaki; Shojiro Tamaki; Hiroyuki Tsuji; Ko Shimamoto
The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.
Plant & cell physiology 2009;50(3):429-38.
2009: Hann Ling Wong; Ko Shimamoto
Sending ROS on a bullet train.
Science signaling 2009;2(90):pe60.
2008: Daisuke Miki; Ko Shimamoto
De novo DNA methylation induced by siRNA targeted to endogenous transcribed sequences is gene-specific and OsMet1-independent in rice.
The Plant journal : for cell and molecular biology 2008;56(4):539-49.
2008: Ayako Nakashima; Letian Chen; Nguyen Phuong Thao; Masayuki Fujiwara; Hann Ling Wong; Masayoshi Kuwano; Kenji Umemura; Ken Shirasu; Tsutomu Kawasaki; Ko Shimamoto
RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.
The Plant cell 2008;20(8):2265-79.
2008: Makoto Abe; Masayuki Fujiwara; Ken-Ichi Kurotani; Shuji Yokoi; Ko Shimamoto
Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).
Plant & cell physiology 2008;49(3):420-32.
2008: Reina Komiya; Akiko Ikegami; Shojiro Tamaki; Shuji Yokoi; Ko Shimamoto
Hd3a and RFT1 are essential for flowering in rice.
Development (Cambridge, England) 2008;135(4):767-74.
2008: Yosuke Okano; Daisuke Miki; Ko Shimamoto
Small interfering RNA (siRNA) targeting of endogenous promoters induces DNA methylation, but not necessarily gene silencing, in rice.
The Plant journal : for cell and molecular biology 2008;53(1):65-77.
2007: Nguyen Phuong Thao; Letian Chen; Ayako Nakashima; Shin-ichiro Hara; Kenji Umemura; Akira Takahashi; Ken Shirasu; Tsutomu Kawasaki; Ko Shimamoto
RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.
The Plant cell 2007;19(12):4035-45.
2007: Hann Ling Wong; Reinhard Pinontoan; Kokoro Hayashi; Ryo Tabata; Takashi Yaeno; Kana Hasegawa; Chojiro Kojima; Hirofumi Yoshioka; Koh Iba; Tsutomu Kawasaki; Ko Shimamoto
Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension.
The Plant cell 2007;19(12):4022-34.
2007: Shojiro Tamaki; Shoichi Matsuo; Hann Ling Wong; Shuji Yokoi; Ko Shimamoto
Hd3a protein is a mobile flowering signal in rice.
Science (New York, N.Y.) 2007;316(5827):1033-6.
2007: Masayuki Fujiwara; Hann Ling Wong; Ko Shimamoto
[New aspect of rice pathology research revealed by proteomics and bioimaging].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2007;52(6 Suppl):711-6.
2006: Ryo Ishikawa; Shuji Yokoi; Ko Shimamoto
[Molecular basis of night break effect on the photoperiodic control of flowering in rice].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2006;51(8):933-42.
2006: Masayuki Fujiwara; Kenji Umemura; Tsutomu Kawasaki; Ko Shimamoto
Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells.
Plant physiology 2006;140(2):734-45.
2006: Tsutomu Kawasaki; Hisako Koita; Tomoyuki Nakatsubo; Kana Hasegawa; Kenichi Wakabayashi; Hiroki Takahashi; Kenji Umemura; Toshiaki Umezawa; Ko Shimamoto
Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(1):230-5.
2006: Masayuki Isshiki; Ayako Tsumoto; Ko Shimamoto
The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.
The Plant cell 2006;18(1):146-58.
2005: Ryo Ishikawa; Shojiro Tamaki; Shuji Yokoi; Noritoshi Inagaki; Tomoko Shinomura; Makoto Takano; Ko Shimamoto
Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
The Plant cell 2005;17(12):3326-36.
2005: Daisuke Miki; Rika Itoh; Ko Shimamoto
RNA silencing of single and multiple members in a gene family of rice.
Plant physiology 2005;138(4):1903-13.
2005: Damien Lieberherr; Nguyen Phuong Thao; Ayako Nakashima; Kenji Umemura; Tsutomu Kawasaki; Ko Shimamoto
A sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRac1 and heterotrimeric G-protein in rice 1[w].
Plant physiology 2005;138(3):1644-52.
2005: Satoru Moritoh; Daisuke Miki; Masahiro Akiyama; Mihoko Kawahara; Takeshi Izawa; Hisaji Maki; Ko Shimamoto
RNAi-mediated silencing of OsGEN-L (OsGEN-like), a new member of the RAD2/XPG nuclease family, causes male sterility by defect of microspore development in rice.
Plant & cell physiology 2005;46(5):699-715.
2005: Hajime Tsunezuka; Masayuki Fujiwara; Tsutomu Kawasaki; Ko Shimamoto
Proteome analysis of programmed cell death and defense signaling using the rice lesion mimic mutant cdr2.
Molecular plant-microbe interactions : MPMI 2005;18(1):52-9.
2004: Kazuko Morino; Odd-Arne Olsen; Ko Shimamoto
Silencing of the aleurone-specific Ltp2-gus gene in transgenic rice is reversed by transgene rearrangements and loss of aberrant transcripts.
Plant & cell physiology 2004;45(10):1500-8.
2004: Hann Ling Wong; Tsuyoshi Sakamoto; Tsutomu Kawasaki; Kenji Umemura; Ko Shimamoto
Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice.
Plant physiology 2004;135(3):1447-56.
2004: Daisuke Miki; Ko Shimamoto
Simple RNAi vectors for stable and transient suppression of gene function in rice.
Plant & cell physiology 2004;45(4):490-5.
2003: Akira Takahashi; Tsutomu Kawasaki; Hann Ling Wong; Utut Suharsono; Hisashi Hirano; Ko Shimamoto
Hyperphosphorylation of a mitochondrial protein, prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdr1.
Plant physiology 2003;132(4):1861-9.
2003: Ryosuke Hayama; Shuji Yokoi; Shojiro Tamaki; Masahiro Yano; Ko Shimamoto
Adaptation of photoperiodic control pathways produces short-day flowering in rice.
Nature 2003;422(6933):719-22.
2002: Utut Suharsono; Yukiko Fujisawa; Tsutomu Kawasaki; Yukimoto Iwasaki; Hikaru Satoh; Ko Shimamoto
The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):13307-12.
2002: Takeshi Izawa; Tetsuo Oikawa; Nobuko Sugiyama; Takatoshi Tanisaka; Masahiro Yano; Ko Shimamoto
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.
Genes & development 2002;16(15):2006-20.
2002: Ryousuke Hayama; Takeshi Izawa; Ko Shimamoto
Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method.
Plant & cell physiology 2002;43(5):494-504.
2002: Ko Shimamoto; Junko Kyozuka
Rice as a model for comparative genomics of plants.
Annual review of plant biology 2002;53():399-419.
2001: N Sugiyama; Takeshi Izawa; Tetsuo Oikawa; Ko Shimamoto
Light regulation of circadian clock-controlled gene expression in rice.
The Plant journal : for cell and molecular biology 2001;26(6):607-15.
2001: M Komatsu; M Maekawa; Ko Shimamoto; Junko Kyozuka
The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development.
Developmental biology 2001;231(2):364-73.
2001: Masayuki Isshiki; Y Yamamoto; H Satoh; Ko Shimamoto
Nonsense-mediated decay of mutant waxy mRNA in rice.
Plant physiology 2001;125(3):1388-95.
2001: E Ono; Hann Ling Wong; Tsutomu Kawasaki; M Hasegawa; O Kodama; Ko Shimamoto
Essential role of the small GTPase Rac in disease resistance of rice.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(2):759-64.
2000: Masayuki Isshiki; M Nakajima; H Satoh; Ko Shimamoto
dull: rice mutants with tissue-specific effects on the splicing of the waxy pre-mRNA.
The Plant journal : for cell and molecular biology 2000;23(4):451-60.
2000: R Terada; M Nakajima; Masayuki Isshiki; R J Okagaki; S R Wessler; Ko Shimamoto
Antisense waxy genes with highly active promoters effectively suppress waxy gene expression in transgenic rice.
Plant & cell physiology 2000;41(7):881-8.
2000: Junko Kyozuka; T Kobayashi; M Morita; Ko Shimamoto
Spatially and temporally regulated expression of rice MADS box genes with similarity to Arabidopsis class A, B and C genes.
Plant & cell physiology 2000;41(6):710-8.
2000: Takeshi Izawa; Tetsuo Oikawa; S Tokutomi; K Okuno; Ko Shimamoto
Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant).
The Plant journal : for cell and molecular biology 2000;22(5):391-9.
1999: Tsutomu Kawasaki; K Henmi; E Ono; S Hatakeyama; M Iwano; H Satoh; Ko Shimamoto
The small GTP-binding protein rac is a regulator of cell death in plants.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(19):10922-6.
1999: H Enoki; Takeshi Izawa; M Kawahara; M Komatsu; S Koh; Junko Kyozuka; Ko Shimamoto
Ac as a tool for the functional genomics of rice.
The Plant journal : for cell and molecular biology 1999;19(5):605-13.
1999: A Takahashi; Tsutomu Kawasaki; K Henmi; K ShiI; O Kodama; H Satoh; Ko Shimamoto
Lesion mimic mutants of rice with alterations in early signaling events of defense.
The Plant journal : for cell and molecular biology 1999;17(5):535-45.
1999: Kazuko Morino; Odd-Arne Olsen; Ko Shimamoto
Silencing of an aleurone-specific gene in transgenic rice is caused by a rearranged transgene.
The Plant journal : for cell and molecular biology 1999;17(3):275-85.
1998: Masayuki Isshiki; Kazuko Morino; M Nakajima; R J Okagaki; S R Wessler; Takeshi Izawa; Ko Shimamoto
A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron.
The Plant journal : for cell and molecular biology 1998;15(1):133-8.
1998: Junko Kyozuka; S Konishi; K Nemoto; Takeshi Izawa; Ko Shimamoto
Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(5):1979-82.
1997: Takeshi Izawa; T Ohnishi; T Nakano; N Ishida; H Enoki; H Hashimoto; K Itoh; R Terada; C Wu; C Miyazaki; T Endo; S Iida; Ko Shimamoto
Transposon tagging in rice.
Plant molecular biology 1997;35(1-2):219-29.
1997: K Itoh; M Nakajima; Ko Shimamoto
Silencing of waxy genes in rice containing Wx transgenes.
Molecular & general genetics : MGG 1997;255(4):351-8.
1996: A Ono; T Izawa; N H Chua; Ko Shimamoto
The rab16B promoter of rice contains two distinct abscisic acid-responsive elements.
Plant physiology 1996;112(2):483-91.
1996: T Izawa; N Ishida; Ko Shimamoto
[Transposon tagging using transgenic plants].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1996;41(9):1415-21; discussion 1397-8.
1995: R Terada; T Nakayama; M Iwabuchi; Ko Shimamoto
A type I element composed of the hexamer (ACGTCA) and octamer (CGCGGATC) motifs plays a role(s) in meristematic expression of a wheat histone H3 gene in transgenic rice plants.
Plant molecular biology 1995;27(1):17-26.
1994: J Kyozuka; M Olive; W James Peacock; Elizabeth S Dennis; Ko Shimamoto
Promoter elements required for developmental expression of the maize Adh1 gene in transgenic rice.
The Plant cell 1994;6(6):799-810.
1993: H Fujimoto; K Itoh; M Yamamoto; J Kyozuka; Ko Shimamoto
Insect resistant rice generated by introduction of a modified delta-endotoxin gene of Bacillus thuringiensis.
Bio/technology (Nature Publishing Company) 1993;11(10):1151-5.
1993: J Kyozuka; D McElroy; T Hayakawa; Y Xie; R Wu; Ko Shimamoto
Light-regulated and cell-specific expression of tomato rbcS-gusA and rice rbcS-gusA fusion genes in transgenic rice.
Plant physiology 1993;102(3):991-1000.
1993: Ko Shimamoto; C Miyazaki; H Hashimoto; T Izawa; K Itoh; R Terada; Y Inagaki; S Iida
Trans-activation and stable integration of the maize transposable element Ds cotransfected with the Ac transposase gene in transgenic rice plants.
Molecular & general genetics : MGG 1993;239(3):354-60.
1993: M Iwabuchi; J Kyozuka; Ko Shimamoto
Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice.
The EMBO journal 1993;12(4):1437-46.
1993: R Terada; T Nakayama; M Iwabuchi; Ko Shimamoto
A wheat histone H3 promoter confers cell division-dependent and -independent expression of the gus A gene in transgenic rice plants.
The Plant journal : for cell and molecular biology 1993;3(2):241-52.
1992: T Hayakawa; Y Zhu; K Itoh; Y Kimura; T Izawa; Ko Shimamoto; S Toriyama
Genetically engineered rice resistant to rice stripe virus, an insect-transmitted virus.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(20):9865-9.
1992: J Kyozuka; Ko Shimamoto
[Analysis of gene expression in cereal species].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1992;37(7):1287-91.
1991: J Kyozuka; H Fujimoto; T Izawa; Ko Shimamoto
Anaerobic induction and tissue-specific expression of maize Adh1 promoter in transgenic rice plants and their progeny.
Molecular & general genetics : MGG 1991;228(1-2):40-8.
1991: T Izawa; C Miyazaki; M Yamamoto; R Terada; S Iida; Ko Shimamoto
Introduction and transposition of the maize transposable element Ac in rice (Oryza sativa L.).
Molecular & general genetics : MGG 1991;227(3):391-6.
1990: A Tanaka; S Mita; S Ohta; J Kyozuka; Ko Shimamoto; K Nakamura
Enhancement of foreign gene expression by a dicot intron in rice but not in tobacco is correlated with an increased level of mRNA and an efficient splicing of the intron.
Nucleic acids research 1990;18(23):6767-70.