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Mary Shimoyama

Research Profile

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Rats
Mouse

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TOP 3
G. Thomas Hayman; Pushkala Jayaraman; Weisong Liu; Victoria Petri; Jeff De Pons; Melinda R Dwinell; Marek Tutaj; Mary Shimoyama
The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information.
Stanley J F Laulederkind; Timothy F Lowry; Rajni Nigam; Victoria Petri; Melinda R Dwinell; G. Thomas Hayman; Howard J Jacob; Jennifer R Smith; Shur-Jen Wang; Mary Shimoyama
Exploring genetic, genomic, and phenotypic data at the rat genome database.
Daniel A Beard; James B Bassingthwaighte; Maxwell Neal; Mary Shimoyama; Nazanin Tabesh-Saleki; Christopher T Thompson; Brian E Carlson
Multiscale modeling and data integration in the virtual physiological rat project.

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All Publications

2013: G. Thomas Hayman; Pushkala Jayaraman; Weisong Liu; Victoria Petri; Jeff De Pons; Melinda R Dwinell; Marek Tutaj; Mary Shimoyama
The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information.
Human genomics 2013;7():4.
2012: Stanley J F Laulederkind; Timothy F Lowry; Rajni Nigam; Victoria Petri; Melinda R Dwinell; G. Thomas Hayman; Howard J Jacob; Jennifer R Smith; Shur-Jen Wang; Mary Shimoyama
Exploring genetic, genomic, and phenotypic data at the rat genome database.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2012;Chapter 1():Unit1.14.
2012: Daniel A Beard; James B Bassingthwaighte; Maxwell Neal; Mary Shimoyama; Nazanin Tabesh-Saleki; Christopher T Thompson; Brian E Carlson
Multiscale modeling and data integration in the virtual physiological rat project.
Annals of biomedical engineering 2012;40(11):2365-78.
2012: Mary Shimoyama; Jennifer R Smith; G. Thomas Hayman; Victoria Petri; Rajni Nigam
Model organism databases in behavioral neuroscience.
International review of neurobiology 2012;104():25-46.
2012: Mary Shimoyama; Leslie Sanders McIntosh; Rakesh Nagarajan; Rajni Nigam; D C Rao; Treva Rice; Melinda R Dwinell
Three ontologies to define phenotype measurement data.
Frontiers in genetics 2012;3():87.
2011: Victoria Petri; Mary Shimoyama; G. Thomas Hayman; Jennifer R Smith; Marek Tutaj; Jeff de Pons; Melinda R Dwinell; Diane H Munzenmaier; Simon N Twigger; Howard J Jacob
The Rat Genome Database pathway portal.
Database : the journal of biological databases and curation 2011;2011():bar010.
2011: Stanley J F Laulederkind; Mary Shimoyama; G. Thomas Hayman; Timothy F Lowry; Rajni Nigam; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Database : the journal of biological databases and curation 2011;2011():bar002.
2011: Mary Shimoyama; Jennifer R Smith; Tom Hayman; Stan Laulederkind; Tim Lowry; Rajni Nigam; Victoria Petri; Shur-Jen Wang; Melinda Dwinell; Howard Jacob
RGD: a comparative genomics platform.
Human genomics 2011;5(2):124-9.
2009: Mary Shimoyama; G. Thomas Hayman; Stanley J F Laulederkind; Rajni Nigam; Timothy F Lowry; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The rat genome database curators: who, what, where, why.
PLoS computational biology 2009;5(11):e1000582.
2007: Simon N Twigger; Mary Shimoyama; Susan Bromberg; Anne E Kwitek; Howard J Jacob
The Rat Genome Database, update 2007--easing the path from disease to data and back again.
Nucleic acids research 2007;35(Database issue):D658-62.
2005: Mary Shimoyama; Victoria Petri; Dean Pasko; Susan Bromberg; Wenhua Wu; Jiali Chen; Nataliya Nenasheva; Anne E Kwitek; Simon Twigger; Howard Jacob
Using multiple ontologies to integrate complex biological data.
Comparative and functional genomics 2005;6(7-8):373-8.
2005: Norberto De La Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon N Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R Gopinath; Glenn Harris; Aubrey Hughes; Yuan Ji; Weihong Jin; Dawei Li; Jedidiah Mathis; Natalya Nenasheva; Jeff Nie; Rajni Nigam; Victoria Petri; Dorothy Reilly; Weiye Wang; Wenhua Wu; Angela Zuniga-Meyer; Lan Zhao; Anne E Kwitek; Peter Tonellato; Howard Jacob
The Rat Genome Database (RGD): developments towards a phenome database.
Nucleic acids research 2005;33(Database issue):D485-91.
2004: Simon N Twigger; Jeff Nie; Victor Ruotti; Jiaming Yu; Dan Chen; Dawei Li; Jedidiah Mathis; Vijay Narayanasamy; Gopal R Gopinath; Dean Pasko; Mary Shimoyama; Norberto De La Cruz; Susan Bromberg; Anne E Kwitek; Howard J Jacob; Peter Tonellato
Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.
Genome research 2004;14(4):651-60.
2002: Simon N Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne E Kwitek; Janan Eppig; Lois Maltais; Donna R Maglott; Greg Schuler; Howard Jacob; Peter Tonellato
Rat Genome Database (RGD): mapping disease onto the genome.
Nucleic acids research 2002;30(1):125-8.