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Hyunjin Shin

Research Profile

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Computational Biology

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Publications

TOP 3
Shannon T Bailey; Xiaole Shirley Liu; Hyunjin Shin; Thomas Westerling; Myles Brown
Estrogen receptor prevents p53-dependent apoptosis in breast cancer.
Michael P Verzi; Hyunjin Shin; Li-Lun Ho; X Shirley Liu; Ramesh A Shivdasani
Essential and redundant functions of caudal family proteins in activating adult intestinal genes.
Tao Liu; Andreas Rechtsteiner; Thea A Egelhofer; Anne Vielle; Isabel Latorre; Ming-Sin Cheung; Sevinc Ercan; Kohta Ikegami; Morten Jensen; Paulina Kolasinska-Zwierz; Heidi Rosenbaum; Hyunjin Shin; Scott Taing; Teruaki Takasaki; A Leonardo Iniguez; Arshad Desai; Abby F Dernburg; Hiroshi Kimura; Jason Dillon Lieb; Julie Ahringer; Susan Strome; X Shirley Liu
Broad chromosomal domains of histone modification patterns in C. elegans.

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All Publications

2012: Shannon T Bailey; Xiaole Shirley Liu; Hyunjin Shin; Thomas Westerling; Myles Brown
Estrogen receptor prevents p53-dependent apoptosis in breast cancer.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(44):18060-5.
2011: Michael P Verzi; Hyunjin Shin; Li-Lun Ho; X Shirley Liu; Ramesh A Shivdasani
Essential and redundant functions of caudal family proteins in activating adult intestinal genes.
Molecular and cellular biology 2011;31(10):2026-39.
2011: Tao Liu; Andreas Rechtsteiner; Thea A Egelhofer; Anne Vielle; Isabel Latorre; Ming-Sin Cheung; Sevinc Ercan; Kohta Ikegami; Morten Jensen; Paulina Kolasinska-Zwierz; Heidi Rosenbaum; Hyunjin Shin; Scott Taing; Teruaki Takasaki; A Leonardo Iniguez; Arshad Desai; Abby F Dernburg; Hiroshi Kimura; Jason Dillon Lieb; Julie Ahringer; Susan Strome; X Shirley Liu
Broad chromosomal domains of histone modification patterns in C. elegans.
Genome research 2011;21(2):227-36.
2011: Tao Liu; Myles Brown; Yiwen Chen; Bernett Lee; Ying Lei; Jian Ma; Clifford A Meyer; Jorge A Ortiz; Utz J Pape; Michael Poidinger; Hyunjin Shin; Len Taing; Yaron Turpaz; Swee S Wong; Kevin Yeung; Yong Zhang; X Shirley Liu
Cistrome: an integrative platform for transcriptional regulation studies.
Genome biology 2011;12(8):R83.
2010: Michael P Verzi; Hyunjin Shin; H Hansen He; Rita Sulahian; Clifford A Meyer; Robert K Montgomery; James C Fleet; Myles Brown; X Shirley Liu; Ramesh A Shivdasani
Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2.
Developmental cell 2010;19(5):713-26.
2010: Michael P Verzi; Pantelis Hatzis; Rita Sulahian; Juliet Philips; Jurian Schuijers; Hyunjin Shin; Ellen Freed; John P Lynch; Duyen T Dang; Myles Brown; Hans Clevers; X Shirley Liu; Ramesh A Shivdasani
TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(34):15157-62.
2010: Sanket P Borgaonkar; Harrison Hocker; Hyunjin Shin; Mia Markey
Comparison of normalization methods for the identification of biomarkers using MALDI-TOF and SELDI-TOF mass spectra.
Omics : a journal of integrative biology 2010;14(1):115-26.
2009: Hyunjin Shin; Tao Liu; Arjun K Manrai; X Shirley Liu
CEAS: cis-regulatory element annotation system.
Bioinformatics (Oxford, England) 2009;25(19):2605-6.
2008: Hyunjin Shin; Bryan Sheu; Maria Joseph; Mia Markey
Guilt-by-association feature selection: identifying biomarkers from proteomic profiles.
Journal of biomedical informatics 2008;41(1):124-36.
2008: Yong Zhang; Hyunjin Shin; Jun S Song; Ying Lei; Xiaole (Shirley) Liu
Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq.
BMC genomics 2008;9():537.
2007: Hyunjin Shin; Miray Mutlu; John M Koomen; Mia Markey
Parametric power spectral density analysis of noise from instrumentation in MALDI TOF mass spectrometry.
Cancer informatics 2007;3():219-30.
2007: Hyunjin Shin; Chih-Wen Kan; Harrison J Hocker; Mia Markey
Effect of normalization methods on biomarker identification utilizing mass spectrometry.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2007;():1114.
2006: Hyunjin Shin; Mia Markey
A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples.
Journal of biomedical informatics 2006;39(2):227-48.
2006: Hyunjin Shin; Mehul P Sampat; Sheldon F Bish; John M Koomen; Mia Markey
Statistical characterization of chemical noise in MALDI TOF MS by wavelet analysis of multiple noise realizations.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():1092.
2005: Hyunjin Shin; Bryan Sheu; Mia Markey
Guilt-By-Association feature selection applied to simulated proteomic data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():1114.