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Daniel Shoemaker

Research Profile

Devices

Oligonucleotide Array Sequence Analysis

Chemicals & Drugs

Procedures

Living Beings

Saccharomyces cerevisiae

Physiology

Concepts & Ideas

Anatomy

Chromosomes, Human, Pair 22

Genes & Molecular Sequences

Co-author Network

Publications

TOP 3
Jason Johnson; Stephen Wilton Edwards; Daniel D Shoemaker; Eric E Schadt
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
Pek Yee Lum; Christopher D Armour; Sergey B Stepaniants; Guy Cavet; Maria K Wolf; J Scott Butler; Jerald C Hinshaw; Philippe Garnier; Glenn D Prestwich; Amy Leonardson; Philip Garrett-Engele; Christopher M Rush; Martin Bard; Greg Schimmack; John W Phillips; Christopher J Roberts; Daniel D Shoemaker
Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes.
Eric E Schadt; Stephen Wilton Edwards; Debraj GuhaThakurta; Daniel J Holder; Lisa Ying; Vladimir Svetnik; Amy Leonardson; Kyle W Hart; Archie Russell; Guoya Li; Guy Cavet; John Castle; Paul McDonagh; Zhengyan Kan; Ronghua Chen; Andrew Kasarskis; Mihai Margarint; Ramon M Caceres; Jason Johnson; Christopher D Armour; Philip Garrett-Engele; Nicholas F Tsinoremas; Daniel D Shoemaker
A comprehensive transcript index of the human genome generated using microarrays and computational approaches.

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All Publications

2005: Jason Johnson; Stephen Wilton Edwards; Daniel D Shoemaker; Eric E Schadt
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
Trends in genetics : TIG 2005;21(2):93-102.
2004: Pek Yee Lum; Christopher D Armour; Sergey B Stepaniants; Guy Cavet; Maria K Wolf; J Scott Butler; Jerald C Hinshaw; Philippe Garnier; Glenn D Prestwich; Amy Leonardson; Philip Garrett-Engele; Christopher M Rush; Martin Bard; Greg Schimmack; John W Phillips; Christopher J Roberts; Daniel D Shoemaker
Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes.
Cell 2004;116(1):121-37.
2004: Eric E Schadt; Stephen Wilton Edwards; Debraj GuhaThakurta; Daniel J Holder; Lisa Ying; Vladimir Svetnik; Amy Leonardson; Kyle W Hart; Archie Russell; Guoya Li; Guy Cavet; John Castle; Paul McDonagh; Zhengyan Kan; Ronghua Chen; Andrew Kasarskis; Mihai Margarint; Ramon M Caceres; Jason Johnson; Christopher D Armour; Philip Garrett-Engele; Nicholas F Tsinoremas; Daniel D Shoemaker
A comprehensive transcript index of the human genome generated using microarrays and computational approaches.
Genome biology 2004;5(10):R73.
2003: Jason Johnson; John Castle; Philip Garrett-Engele; Zhengyan Kan; Patrick M Loerch; Christopher D Armour; Ralph Santos; Eric E Schadt; Roland B Stoughton; Daniel D Shoemaker
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.
Science (New York, N.Y.) 2003;302(5653):2141-4.
2003: Robin Wright; Mark L Parrish; Emily J Cadera; Lynnelle Larson; Clinton K Matson; Philip Garrett-Engele; Christopher D Armour; Pek Yee Lum; Daniel D Shoemaker
Parallel analysis of tagged deletion mutants efficiently identifies genes involved in endoplasmic reticulum biogenesis.
Yeast (Chichester, England) 2003;20(10):881-92.
2003: Yudong D He; Hongyue Dai; Eric E Schadt; Guy Cavet; Stephen Wilton Edwards; Sergey B Stepaniants; Sven Duenwald; Robert Kleinhanz; Allan R Jones; Daniel D Shoemaker; Roland B Stoughton
Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.
Bioinformatics (Oxford, England) 2003;19(8):956-65.
2003: John Castle; Philip Garrett-Engele; Christopher D Armour; Sven J Duenwald; Patrick M Loerch; Michael R Meyer; Eric E Schadt; Roland B Stoughton; Mark L Parrish; Daniel D Shoemaker; Jason Johnson
Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
Genome biology 2003;4(10):R66.
2001: Timothy R Hughes; Mao Mao; A R Jones; Julja Burchard; Matthew J Marton; K W Shannon; S M Lefkowitz; Ziman Michael; Janell Schelter; Michael R Meyer; Sumire V Kobayashi; C Davis; Hongyue Dai; Yudong D He; S B Stephaniants; Guy Cavet; W L Walker; A West; Ernest M Coffey; Daniel D Shoemaker; Roland B Stoughton; A P Blanchard; Stephen H Friend; Peter Linsley
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.
Nature biotechnology 2001;19(4):342-7.
2000: Timothy R Hughes; Matthew J Marton; A R Jones; Christopher J Roberts; Roland B Stoughton; Christopher D Armour; Holly Bennett; Ernest M Coffey; H Dai; Yudong D He; M J Kidd; A M King; Michael R Meyer; D Slade; Pek Yee Lum; Sergey B Stepaniants; Daniel D Shoemaker; D Gachotte; Kalpana Chakraburtty; J Simon; Martin Bard; S H Friend
Functional discovery via a compendium of expression profiles.
Cell 2000;102(1):109-26.