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Gary Siuzdak

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Zheng-Jiang Zhu; Junhua Wang; Steven M Yannone; Caroline H Johnson; Gary J Patti; Andrew W Schultz; Gary Siuzdak
Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database.
Jacqueline L Blankman; Jonathan Z Long; Gary Siuzdak; Sunia A Trauger; Benjamin F Cravatt
ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC.
Gary Patti; Duane Rinehart; Leah P Shriver; Kevin Cho; Caroline H Johnson; Nathaniel G Mahieu; Marianne Manchester; Igor Nikolskiy; Ralf Tautenhahn; Gary Siuzdak
A view from above: cloud plots to visualize global metabolomic data.

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All Publications

2013: Zheng-Jiang Zhu; Junhua Wang; Steven M Yannone; Caroline H Johnson; Gary J Patti; Andrew W Schultz; Gary Siuzdak
Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database.
Nature protocols 2013;8(3):451-60.
2013: Jacqueline L Blankman; Jonathan Z Long; Gary Siuzdak; Sunia A Trauger; Benjamin F Cravatt
ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(4):1500-5.
2013: Gary Patti; Duane Rinehart; Leah P Shriver; Kevin Cho; Caroline H Johnson; Nathaniel G Mahieu; Marianne Manchester; Igor Nikolskiy; Ralf Tautenhahn; Gary Siuzdak
A view from above: cloud plots to visualize global metabolomic data.
Analytical chemistry 2013;85(2):798-804.
2012: Ralf Tautenhahn; Wilasinee Uritboonthai; Zhengjiang Zhu; Kevin Cho; Gary J Patti; Gary Siuzdak
An accelerated workflow for untargeted metabolomics using the METLIN database.
Nature biotechnology 2012;30(9):826-8.
2012: Ralf Tautenhahn; Gary J Patti; Duane Rinehart; Gary Siuzdak
XCMS Online: a web-based platform to process untargeted metabolomic data.
Analytical chemistry 2012;84(11):5035-9.
2012: Matthew Greving; Katherine Louie; Paul Adams; Benjamin Bowen; Xiaoliang Cheng; Joseph Cohen; Kai Deng; Michael Nyman; Wolfgang Reindl; Blake Simmons; Anup Singh; Gary Siuzdak; Trent Northen
Acoustic deposition with NIMS as a high-throughput enzyme activity assay.
Analytical and bioanalytical chemistry 2012;403(3):707-11.
2012: Gary J Patti; Oscar Yanes; Gary Siuzdak
Innovation: Metabolomics: the apogee of the omics trilogy.
Nature reviews. Molecular cell biology 2012;13(4):263-9.
2012: Gary J Patti; Ralf Tautenhahn; Gary Siuzdak
Meta-analysis of untargeted metabolomic data from multiple profiling experiments.
Nature protocols 2012;7(3):508-16.
2012: Gary J Patti; Leah P Shriver; Jean-Phillipe Courade; Marianne Manchester; Ralf Tautenhahn; Oscar Yanes; Gary Siuzdak
Metabolomics implicates altered sphingolipids in chronic pain of neuropathic origin.
Nature chemical biology 2012;8(3):232-4.
2012: Tim U Ukrohne; Junhua Wang; Peter D Westenskow; Saiyong Zhu; Sheng Ding; Alison L Dorsey; David F Friedlander; Toshihide Kurihara; Mandy Lehmann; Wenlin Li; Andrew Schultz; Gary Siuzdak; Martin Friedlander
Generation of retinal pigment epithelial cells from small molecules and OCT4 reprogrammed human induced pluripotent stem cells.
Stem cells translational medicine 2012;1(2):96-109.
2011: Jonathan Z Long; David Milliken; Sherry Niessen; Gary Siuzdak; Sunia A Trauger; Chu Wang; Justin S Cisar; Benjamin F Cravatt
Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids.
Nature chemical biology 2011;7(11):763-5.
2011: Oscar Yanes; Ralf Tautenhahn; Gary J Patti; Gary Siuzdak
Expanding coverage of the metabolome for global metabolite profiling.
Analytical chemistry 2011;83(6):2152-61.
2011: Ralf Tautenhahn; Gary J Patti; Ewa Kalisiak; Takashi Miyamoto; Manuela Schmidt; Fang Yin Lo; Joshua McBee; Nitin S Baliga; Gary Siuzdak
metaXCMS: second-order analysis of untargeted metabolomics data.
Analytical chemistry 2011;83(3):696-700.
2011: Gurudutt Pendyala; Sunia A Trauger; Gary Siuzdak; Howard S Fox
Short communication: quantitative proteomic plasma profiling reveals activation of host defense to oxidative stress in chronic SIV and methamphetamine comorbidity.
AIDS research and human retroviruses 2011;27(2):179-82.
2011: Valentina Marchetti; Stacey Moreno; Samia Naccache; Glen Nemerow; Gary Siuzdak; Kathleen Storm; Matthew Wang; Oscar Yanes; Min Zhan; Edith Aguilar; David Friedlander; Martin Friedlander
Differential macrophage polarization promotes tissue remodeling and repair in a model of ischemic retinopathy.
Scientific reports 2011;1():76.
2011: W Andrew Lancaster; Jeremy L Praissman; Farris L Poole; Aleksandar Cvetkovic; Angeli Lal Menon; Joseph W Scott; Francis E Jenney; Michael P Thorgersen; Ewa Kalisiak; Junefredo V Apon; Sunia A Trauger; Gary Siuzdak; John A Tainer; Michael W W Adams
A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data.
BMC bioinformatics 2011;12():64.
2011: Michael E Powers; Peter A Smith; Tucker C Roberts; Bruce J Fowler; Charles C King; Sunia A Trauger; Gary Siuzdak; Floyd E Romesberg
Type I signal peptidase and protein secretion in Staphylococcus epidermidis.
Journal of bacteriology 2011;193(2):340-8.
2011: Matthew P Greving; Gary J Patti; Gary Siuzdak
Nanostructure-initiator mass spectrometry metabolite analysis and imaging.
Analytical chemistry 2011;83(1):2-7.
2010: G J Patti; L P Shriver; C A Wassif; Hin-Koon Woo; Wilasinee Uritboonthai; Junefredo V Apon; Marianne Manchester; F D Porter; Gary Siuzdak
Nanostructure-initiator mass spectrometry (NIMS) imaging of brain cholesterol metabolites in Smith-Lemli-Opitz syndrome.
Neuroscience 2010;170(3):858-64.
2010: Florian Kopp; Toru Komatsu; Daniel K Nomura; Sunia A Trauger; Jason R Thomas; Gary Siuzdak; Gabriel M Simon; Benjamin F Cravatt
The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice.
Chemistry & biology 2010;17(8):831-40.
2010: Aleksandar Cvetkovic; Angeli Lal Menon; Michael P Thorgersen; Joseph W Scott; Farris L Poole; Francis E Jenney; W Andrew Lancaster; Jeremy L Praissman; Saratchandra Shanmukh; Brian J Vaccaro; Sunia A Trauger; Ewa Kalisiak; Junefredo V Apon; Gary Siuzdak; Steven M Yannone; John A Tainer; Michael W W Adams
Microbial metalloproteomes are largely uncharacterized.
Nature 2010;466(7307):779-82.
2010: Oscar Yanes; Julie Clark; Diana M Wong; Gary J Patti; Antonio Sánchez-Ruiz; H Paul Benton; Sunia A Trauger; Caroline Desponts; Sheng Ding; Gary Siuzdak
Metabolic oxidation regulates embryonic stem cell differentiation.
Nature chemical biology 2010;6(6):411-7.
2010: Rachel D Lowe; Endre J Szili; Paul Kirkbride; Helmut Thissen; Gary Siuzdak; Nicolas H Voelcker
Combined immunocapture and laser desorption/ionization mass spectrometry on porous silicon.
Analytical chemistry 2010;82(10):4201-8.
2010: Marc T Facciotti; Wyming L Pang; Fang-yin Lo; Kenia Whitehead; Tie Koide; Ken-ichi Masumura; Min Pan; Amardeep Kaur; David J Larsen; David J Reiss; Linh Hoang; Ewa Kalisiak; Trent Northen; Sunia A Trauger; Gary Siuzdak; Nitin S Baliga
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.
BMC systems biology 2010;4():64.
2010: Gary J Patti; Hin-Koon Woo; Oscar Yanes; Leah Shriver; Diane Thomas; Wilasinee Uritboonthai; Junefredo V Apon; Rick Steenwyk; Marianne Manchester; Gary Siuzdak
Detection of carbohydrates and steroids by cation-enhanced nanostructure-initiator mass spectrometry (NIMS) for biofluid analysis and tissue imaging.
Analytical chemistry 2010;82(1):121-8.
2010: Gurudutt Pendyala; Sunia A Trauger; Gary Siuzdak; Howard S Fox
Quantitative plasma proteomic profiling identifies the vitamin E binding protein afamin as a potential pathogenic factor in SIV induced CNS disease.
Journal of proteome research 2010;9(1):352-8.
2010: Michael I Dorrell; Edith Aguilar; Ruth Jacobson; Sunia A Trauger; Jeffrey Friedlander; Gary Siuzdak; Martin Friedlander
Maintaining retinal astrocytes normalizes revascularization and prevents vascular pathology associated with oxygen-induced retinopathy.
Glia 2010;58(1):43-54.
2009: Bridgit Crews; William R Wikoff; Gary J Patti; Hin-Koon Woo; Ewa Kalisiak; Johanna Heideker; Gary Siuzdak
Variability analysis of human plasma and cerebral spinal fluid reveals statistical significance of changes in mass spectrometry-based metabolomics data.
Analytical chemistry 2009;81(20):8538-44.
2009: William R Wikoff; Ewa Kalisak; Sunia A Trauger; Marianne Manchester; Gary Siuzdak
Response and recovery in the plasma metabolome tracks the acute LCMV-induced immune response.
Journal of proteome research 2009;8(7):3578-87.
2009: Hin-Koon Woo; Eden P Go; Linh Hoang; Sunia A Trauger; Benjamin Bowen; Gary Siuzdak; Trent R Northen
Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM 2009;23(12):1849-55.
2009: Hongyan Zhou; Shili Wu; Jin Young Joo; Saiyong Zhu; Dong Wook Han; Tongxiang Lin; Sunia Trauger; Geoffery Bien; Susan Yao; Yong Zhu; Gary Siuzdak; Hans R Schöler; Lingxun Duan; Sheng Ding
Generation of induced pluripotent stem cells using recombinant proteins.
Cell stem cell 2009;4(5):381-4.
2009: Kristopher J Koudelka; Giuseppe Destito; Emily M Plummer; Sunia A Trauger; Gary Siuzdak; Marianne Manchester
Endothelial targeting of cowpea mosaic virus (CPMV) via surface vimentin.
PLoS pathogens 2009;5(5):e1000417.
2009: Gurudutt Pendyala; Sunia A Trauger; Ewa Kalisiak; Ronald J Ellis; Gary Siuzdak; Howard S Fox
Cerebrospinal fluid proteomics reveals potential pathogenic changes in the brains of SIV-infected monkeys.
Journal of proteome research 2009;8(5):2253-60.
2009: Oscar Yanes; Hin-Koon Woo; Trent R Northen; Stacey R Oppenheimer; Leah Shriver; Junefredo V Apon; Mayra N Estrada; Michael J Potchoiba; Rick Steenwyk; Marianne Manchester; Gary Siuzdak
Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis.
Analytical chemistry 2009;81(8):2969-75.
2009: Angeli Lal Menon; Farris L Poole; Aleksandar Cvetkovic; Sunia A Trauger; Ewa Kalisiak; Joseph W Scott; Saratchandra Shanmukh; Jeremy Praissman; Francis E Jenney; William R Wikoff; John V Apon; Gary Siuzdak; Michael W W Adams
Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.
Molecular & cellular proteomics : MCP 2009;8(4):735-51.
2009: William R Wikoff; Andrew T Anfora; Jun Liu; Peter G Schultz; Scott A Lesley; Eric C Peters; Gary Siuzdak
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(10):3698-703.
2009: Michael I Dorrell; Edith Aguilar; Ruth Jacobson; Oscar Yanes; Ray Gariano; John R Heckenlively; Eyal Banin; G Anthony Ramirez; Mehdi Gasmi; Alan Bird; Gary Siuzdak; Martin Friedlander
Antioxidant or neurotrophic factor treatment preserves function in a mouse model of neovascularization-associated oxidative stress.
The Journal of clinical investigation 2009;119(3):611-23.
2009: Jaroslaw Kalisiak; Sunia A Trauger; Ewa Kalisiak; Hirotoshi Morita; Valery V Fokin; Michael W W Adams; K Barry Sharpless; Gary Siuzdak
Identification of a new endogenous metabolite and the characterization of its protein interactions through an immobilization approach.
Journal of the American Chemical Society 2009;131(1):378-86.
2008: Anne E Bunner; Sunia A Trauger; Gary Siuzdak; James R Williamson
Quantitative ESI-TOF analysis of macromolecular assembly kinetics.
Analytical chemistry 2008;80(24):9379-86.
2008: Volker Vallon; Satish A Eraly; William R Wikoff; Timo Rieg; Gregory Kaler; David M Truong; Sun-Young Ahn; Nitish R Mahapatra; Sushil K Mahata; Jon A Gangoiti; Wei Wu; Bruce A Barshop; Gary Siuzdak; Sanjay K Nigam
Organic anion transporter 3 contributes to the regulation of blood pressure.
Journal of the American Society of Nephrology : JASN 2008;19(9):1732-40.
2008: H P Benton; D M Wong; Sunia A Trauger; Gary Siuzdak
XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization.
Analytical chemistry 2008;80(16):6382-9.
2008: William R Wikoff; Gurudutt Pendyala; Gary Siuzdak; Howard S Fox
Metabolomic analysis of the cerebrospinal fluid reveals changes in phospholipase expression in the CNS of SIV-infected macaques.
The Journal of clinical investigation 2008;118(7):2661-9.
2008: Satish A Eraly; Volker Vallon; Timo Rieg; Jon A Gangoiti; William R Wikoff; Gary Siuzdak; Bruce A Barshop; Sanjay K Nigam
Multiple organic anion transporters contribute to net renal excretion of uric acid.
Physiological genomics 2008;33(2):180-92.
2008: Trent R Northen; Jinq-Chyi Lee; Linh Hoang; Jason Raymond; Der-Ren Hwang; Steven M Yannone; Chi-Huey Wong; Gary Siuzdak
A nanostructure-initiator mass spectrometry-based enzyme activity assay.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(10):3678-83.
2008: Sunia A Trauger; Ewa Kalisak; Jaroslaw Kalisiak; Hirotoshi Morita; Michael V Weinberg; Angeli Lal Menon; Farris L Poole; Michael W W Adams; Gary Siuzdak
Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.
Journal of proteome research 2008;7(3):1027-35.
2008: Anders Nordström; Elizabeth J Want; Trent Northen; Janne Lehtiö; Gary Siuzdak
Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics.
Analytical chemistry 2008;80(2):421-9.
2008: Hin-Koon Woo; Trent R Northen; Oscar Yanes; Gary Siuzdak
Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis.
Nature protocols 2008;3(8):1341-9.
2007: William R Wikoff; Jon A Gangoiti; Bruce A Barshop; Gary Siuzdak
Metabolomics identifies perturbations in human disorders of propionate metabolism.
Clinical chemistry 2007;53(12):2169-76.
2007: Trent R Northen; Hin-Koon Woo; Michael T Northen; Anders Nordström; Winnie Uritboonthail; Kimberly L Turner; Gary Siuzdak
High surface area of porous silicon drives desorption of intact molecules.
Journal of the American Society for Mass Spectrometry 2007;18(11):1945-9.
2007: Trent R Northen; Oscar Yanes; Michael T Northen; Dena Marrinucci; Wilasinee Uritboonthai; Junefredo V Apon; Stephen L Golledge; Anders Nordström; Gary Siuzdak
Clathrate nanostructures for mass spectrometry.
Nature 2007;449(7165):1033-6.
2007: Matthew E Lissauer; Steven B Johnson; Gary Siuzdak; Grant V Bochicchio; Craig Whiteford; Bill Nussbaumer; Richard Moore; Thomas Scalea
Coagulation and complement protein differences between septic and uninfected systemic inflammatory response syndrome patients.
The Journal of trauma 2007;62(5):1082-92; discussion 1092-4.
2007: Eden P Go; Wilasinee Uritboonthai; Junefredo V Apon; Sunia A Trauger; Anders Nordstrom; Grace O'Maille; Scott M Brittain; Eric C Peters; Gary Siuzdak
Selective metabolite and peptide capture/mass detection using fluorous affinity tags.
Journal of proteome research 2007;6(4):1492-9.
2007: Gurudutt Pendyala; Elizabeth J Want; William Webb; Gary Siuzdak; Howard S Fox
Biomarkers for neuroAIDS: the widening scope of metabolomics.
Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology 2007;2(1):72-80.
2007: Elizabeth J Want; Anders Nordström; Hirotoshi Morita; Gary Siuzdak
From exogenous to endogenous: the inevitable imprint of mass spectrometry in metabolomics.
Journal of proteome research 2007;6(2):459-68.
2007: David M Mutch; Grace O'Maille; William R Wikoff; Therese Wiedmer; Peter J Sims; Gary Siuzdak
Mobilization of pro-inflammatory lipids in obese Plscr3-deficient mice.
Genome biology 2007;8(3):R38.
2006: Zhouxin Shen; Elizabeth J Want; Wei Chen; William Keating; William Nussbaumer; Richard Moore; Thomas M Gentle; Gary Siuzdak
Sepsis plasma protein profiling with immunodepletion, three-dimensional liquid chromatography tandem mass spectrometry, and spectrum counting.
Journal of proteome research 2006;5(11):3154-60.
2006: Eden P Go; William R Wikoff; Zhouxin Shen; Grace O'Maille; Hirotoshi Morita; Thomas P Conrads; Anders Nordstrom; Sunia A Trauger; Wilasinee Uritboonthai; David A Lucas; King C Chan; Timothy D Veenstra; Hanna Lewicki; Michael B A Oldstone; Anette Schneemann; Gary Siuzdak
Mass spectrometry reveals specific and global molecular transformations during viral infection.
Journal of proteome research 2006;5(9):2405-16.
2006: Anders Nordström; Grace O'Maille; Chuan Qin; Gary Siuzdak
Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum.
Analytical chemistry 2006;78(10):3289-95.
2006: Jinq-Chyi Lee; Chung-Yi Wu; Junefredo V Apon; Gary Siuzdak; Chi-Huey Wong
Reactivity-based one-pot synthesis of the tumor-associated antigen N3 minor octasaccharide for the development of a photocleavable DIOS-MS sugar array.
Angewandte Chemie (International ed. in English) 2006;45(17):2753-7.
2006: Colin A Smith; Elizabeth J Want; Grace O'Maille; Ruben Abagyan; Gary Siuzdak
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.
Analytical chemistry 2006;78(3):779-87.
2006: Elizabeth J Want; Grace O'Maille; Colin A Smith; Theodore R Brandon; Wilasinee Uritboonthai; Chuan Qin; Sunia A Trauger; Gary Siuzdak
Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry.
Analytical chemistry 2006;78(3):743-52.
2006: Rick C Steenwyk; J Matthew Hutzler; Jim Sams; Zhouxin Shen; Gary Siuzdak
Atmospheric pressure desorption/ionization on silicon ion trap mass spectrometry applied to the quantitation of midazolam in rat plasma and determination of midazolam 1'-hydroxylation kinetics in human liver microsomes.
Rapid communications in mass spectrometry : RCM 2006;20(24):3717-22.
2006: Anders Nordström; Junefredo V Apon; Wilasinee Uritboonthai; Eden P Go; Gary Siuzdak
Surfactant-enhanced desorption/ionization on silicon mass spectrometry.
Analytical chemistry 2006;78(1):272-8.
2005: Guanghong Luo; Yong Chen; Gary Siuzdak; Akos Vertes
Surface modification and laser pulse length effects on internal energy transfer in DIOS.
The journal of physical chemistry. B 2005;109(51):24450-6.
2005: Colin A Smith; Grace O'Maille; Elizabeth J Want; Chuan Qin; Sunia A Trauger; Theodore R Brandon; Darlene E Custodio; Ruben Abagyan; Gary Siuzdak
METLIN: a metabolite mass spectral database.
Therapeutic drug monitoring 2005;27(6):747-51.
2005: Megan W T Talkington; Gary Siuzdak; James R Williamson
An assembly landscape for the 30S ribosomal subunit.
Nature 2005;438(7068):628-32.
2005: Elizabeth J Want; Benjamin F Cravatt; Gary Siuzdak
The expanding role of mass spectrometry in metabolite profiling and characterization.
Chembiochem : a European journal of chemical biology 2005;6(11):1941-51.
2005: Eilyn R Lacy; Yuefeng Wang; Jeremy Post; Amanda Nourse; William Webb; Marina Mapelli; Andrea Musacchio; Gary Siuzdak; Richard W Kriwacki
Molecular basis for the specificity of p27 toward cyclin-dependent kinases that regulate cell division.
Journal of molecular biology 2005;349(4):764-73.
2005: Brian Bothner; Derek Taylor; Bokkyoo Jun; Kelly K Lee; Gary Siuzdak; Christian P Schultz; Christian P Schlutz; John E Johnson
Maturation of a tetravirus capsid alters the dynamic properties and creates a metastable complex.
Virology 2005;334(1):17-27.
2005: Eden P Go; Junefredo V Apon; G Luo; Alan Saghatelian; RH Daniels; V Sahi; Robert Dubrow; Benjamin F Cravatt; Akos Vertes; Gary Siuzdak
Desorption/ionization on silicon nanowires.
Analytical chemistry 2005;77(6):1641-6.
2004: Alan Saghatelian; Sunia A Trauger; Elizabeth J Want; E Gregory Hawkins; Gary Siuzdak; Benjamin F Cravatt
Assignment of endogenous substrates to enzymes by global metabolite profiling.
Biochemistry 2004;43(45):14332-9.
2004: Jun-Cai Meng; Gary Siuzdak; MG Finn
Affinity mass spectrometry from a tailored porous silicon surface.
Chemical communications (Cambridge, England) 2004;(18):2108-9.
2004: Zhouxin Shen; John J Thomas; Gary Siuzdak; Robert D Blackledge
A case study on forensic polymer analysis by DIOS-MS: the suspect who gave us the SLIP.
Journal of forensic sciences 2004;49(5):1028-35.
2004: Sunia A Trauger; Eugene Wu; Steven J Bark; Glen R Nemerow; Gary Siuzdak
The identification of an adenovirus receptor by using affinity capture and mass spectrometry.
Chembiochem : a European journal of chemical biology 2004;5(8):1095-9.
2004: Sunia A Trauger; Eden P Go; Zhouxin Shen; Junefredo V Apon; Bruce J Compton; Edouard S P Bouvier; MG Finn; Gary Siuzdak
High sensitivity and analyte capture with desorption/ionization mass spectrometry on silylated porous silicon.
Analytical chemistry 2004;76(15):4484-9.
2004: Zhouxin Shen; Eden P Go; Alejandra Gamez; Junefredo V Apon; Valery V Fokin; Mike Greig; Manuel Ventura; John E Crowell; Ola Blixt; James C Paulson; Raymond C Stevens; MG Finn; Gary Siuzdak
A mass spectrometry plate reader: monitoring enzyme activity and inhibition with a Desorption/Ionization on Silicon (DIOS) platform.
Chembiochem : a European journal of chemical biology 2004;5(7):921-7.
2004: Eugene Wu; Sunia A Trauger; Lars Pache; Tina-Marie Mullen; Dan J Von Seggern; Gary Siuzdak; Glen R Nemerow
Membrane cofactor protein is a receptor for adenoviruses associated with epidemic keratoconjunctivitis.
Journal of virology 2004;78(8):3897-905.
2004: Brian Bothner; Gary Siuzdak
Electrospray ionization of a whole virus: analyzing mass, structure, and viability.
Chembiochem : a European journal of chemical biology 2004;5(3):258-60.
2004: Jun-Cai Meng; Claudia Averbuj; Warren G Lewis; Gary Siuzdak; MG Finn
Cleavable linkers for porous silicon-based mass spectrometry.
Angewandte Chemie (International ed. in English) 2004;43(10):1255-60.
2003: Eden P Go; Zhouxin Shen; Ken Harris; Gary Siuzdak
Quantitative analysis with desorption/ionization on silicon mass spectrometry using electrospray deposition.
Analytical chemistry 2003;75(20):5475-9.
2003: Nichole Reisdorph; John J Thomas; Umesh Katpally; Elaine Chase; Ken Harris; Gary Siuzdak; Thomas J Smith
Human rhinovirus capsid dynamics is controlled by canyon flexibility.
Virology 2003;314(1):34-44.
2003: Eden P Go; Jessica E Prenni; Jing Wei; Arianna Jones; Steven C Hall; Halina Ewa Witkowska; Zhouxin Shen; Gary Siuzdak
Desorption/ionization on silicon time-of-flight/time-of-flight mass spectrometry.
Analytical chemistry 2003;75(10):2504-6.
2003: Sulan Yao; Jun-Cai Meng; Gary Siuzdak; MG Finn
New catalysts for the asymmetric hydrosilylation of ketones discovered by mass spectrometry screening.
The Journal of organic chemistry 2003;68(7):2540-6.
2002: Thomas J Smith; Timothy Schmidt; Jie Fang; Jane Wu; Gary Siuzdak; Charles A Stanley
The structure of apo human glutamate dehydrogenase details subunit communication and allostery.
Journal of molecular biology 2002;318(3):765-77.
2001: John J Thomas; Zhouxin Shen; John E Crowell; MG Finn; Gary Siuzdak
Desorption/ionization on silicon (DIOS): a diverse mass spectrometry platform for protein characterization.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(9):4932-7.
2001: Steven J Bark; Nemone Muster; John R Yates; Gary Siuzdak
High-temperature protein mass mapping using a thermophilic protease.
Journal of the American Chemical Society 2001;123(8):1774-5.
2001: K Broo; J Wei; Dawn Marshall; F Brown; Thomas J Smith; John E Johnson; Anette Schneemann; Gary Siuzdak
Viral capsid mobility: a dynamic conduit for inactivation.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2274-7.
2001: Zhouxin Shen; John J Thomas; Claudia Averbuj; K M Broo; M Engelhard; John E Crowell; MG Finn; Gary Siuzdak
Porous silicon as a versatile platform for laser desorption/ionization mass spectrometry.
Analytical chemistry 2001;73(3):612-9.
2000: Brian Bothner; R Chavez; J Wei; C Strupp; Q Phung; Anette Schneemann; Gary Siuzdak
Monitoring enzyme catalysis with mass spectrometry.
The Journal of biological chemistry 2000;275(18):13455-9.
2000: John J Thomas; R Bakhtiar; Gary Siuzdak
Mass spectrometry in viral proteomics.
Accounts of chemical research 2000;33(3):179-87.
2000: Richard W Kriwacki; Gary Siuzdak
Probing protein-protein interactions with mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 2000;146():223-38.
1999: T P Hollenbeck; Gary Siuzdak; R D Blackledge
Electrospray and MALDI mass spectrometry in the identification of spermicides in criminal investigations.
Journal of forensic sciences 1999;44(4):783-8.
1999: K Chatman; T Hollenbeck; L Hagey; M Vallee; R Purdy; F Weiss; Gary Siuzdak
Nanoelectrospray mass spectrometry and precursor ion monitoring for quantitative steroid analysis and attomole sensitivity.
Analytical chemistry 1999;71(13):2358-63.
1999: J Wei; J M Buriak; Gary Siuzdak
Desorption-ionization mass spectrometry on porous silicon.
Nature 1999;399(6733):243-6.
1999: S Takayama; S J Chung; Y Igarashi; Y Ichikawa; A Sepp; R I Lechler; J Wu; T Hayashi; Gary Siuzdak; Chi-Huey Wong
Selective inhibition of beta-1,4- and alpha-1,3-galactosyltransferases: donor sugar-nucleotide based approach.
Bioorganic & medicinal chemistry 1999;7(2):401-9.
1999: Brian Bothner; Anette Schneemann; Dawn Marshall; V Reddy; John E Johnson; Gary Siuzdak
Crystallographically identical virus capsids display different properties in solution.
Nature structural biology 1999;6(2):114-6.
1999: Philippe Marmey; Brian Bothner; E Jacquot; Alexandre de Kochko; C A Ong; Pierre Yot; Gary Siuzdak; Roger N Beachy; Claude M Fauquet
Rice tungro bacilliform virus open reading frame 3 encodes a single 37-kDa coat protein.
Virology 1999;253(2):319-26.
1999: Vickie Tsui; C Garcia; S Cavagnero; Gary Siuzdak; H Jane Dyson; Peter Wright
Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through and obligatory intermediate.
Protein science : a publication of the Protein Society 1999;8(1):45-9.
1998: D R Owens; Brian Bothner; Q Phung; K Harris; Gary Siuzdak
Aspects of oligonucleotide and peptide sequencing with MALDI and electrospray mass spectrometry.
Bioorganic & medicinal chemistry 1998;6(9):1547-54.
1998: JK Lewis; Mohammed Bendahmane; Thomas J Smith; Roger N Beachy; Gary Siuzdak
Identification of viral mutants by mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(15):8596-601.
1998: JK Lewis; Brian Bothner; Thomas J Smith; Gary Siuzdak
Antiviral agent blocks breathing of the common cold virus.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(12):6774-8.
1998: Gary Siuzdak
Probing viruses with mass spectrometry.
Journal of mass spectrometry : JMS 1998;33(3):203-11.
1998: Brian Bothner; X F Dong; L Bibbs; John E Johnson; Gary Siuzdak
Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry.
The Journal of biological chemistry 1998;273(2):673-6.
1998: Gary Siuzdak; JK Lewis
Applications of mass spectrometry in combinatorial chemistry.
Biotechnology and bioengineering 1998;61(2):127-34.
1997: J Wu; K Chatman; Ken Harris; Gary Siuzdak
An automated MALDI mass spectrometry approach for optimizing cyclosporin extraction and quantitation.
Analytical chemistry 1997;69(18):3767-71.
1997: J Wu; S Takayama; Chi-Huey Wong; Gary Siuzdak
Quantitative electrospray mass spectrometry for the rapid assay of enzyme inhibitors.
Chemistry & biology 1997;4(9):653-7.
1997: Richard W Kriwacki; J Wu; LL Tennant; Peter Wright; Gary Siuzdak
Probing protein structure using biochemical and biophysical methods. Proteolysis, matrix-assisted laser desorption/ionization mass spectrometry, high-performance liquid chromatography and size-exclusion chromatography of p21Waf1/Cip1/Sdi1.
Journal of chromatography. A 1997;777(1):23-30.
1996: MC Fitzgerald; Gary Siuzdak
Biochemical mass spectrometry: worth the weight?
Chemistry & biology 1996;3(9):707-15.
1996: Gary Siuzdak; Brian Bothner; Mark Yeager; Christophe Brugidou; Claude M Fauquet; K Hoey; C M Chang
Mass spectrometry and viral analysis.
Chemistry & biology 1996;3(1):45-8.
1995: Benjamin F Cravatt; O Prospero-Garcia; Gary Siuzdak; Norton B Gilula; Steven J Henriksen; Dale L Boger; Richard A Lerner
Chemical characterization of a family of brain lipids that induce sleep.
Science (New York, N.Y.) 1995;268(5216):1506-9.
1995: J F Krebs; Gary Siuzdak; H Jane Dyson; J D Stewart; Stephen J Benkovic
Detection of a catalytic antibody species acylated at the active site by electrospray mass spectrometry.
Biochemistry 1995;34(3):720-3.
1994: Richard A Lerner; Gary Siuzdak; O Prospero-Garcia; Steven J Henriksen; Dale L Boger; Benjamin F Cravatt
Cerebrodiene: a brain lipid isolated from sleep-deprived cats.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(20):9505-8.
1994: J D Stewart; J F Krebs; Gary Siuzdak; Anthony J Berdis; D B Smithrud; Stephen J Benkovic
Dissection of an antibody-catalyzed reaction.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(16):7404-9.
1993: D Rideout; A Bustamante; Gary Siuzdak
Cationic drug analysis using matrix-assisted laser desorption/ionization mass spectrometry: application to influx kinetics, multidrug resistance, and intracellular chemical change.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(21):10226-9.