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Sandra Smit

Research Profile

Phenomena

Evolution, Molecular

Concepts & Ideas

Chemicals & Drugs

Occupations

Computational Biology

Activities & Behaviors

Software

Procedures

Living Beings

Proteobacteria

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Co-author Network

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Publications

TOP 3
Jeremy Widmann; Shandy Wikman; Jesse R R Zaneveld; Jana Chocholousova; Paul Gardner; Matthew K Iyer; Zongzhi Liu; Catherine A Lozupone; Daniel McDonald; John Quinn; Sandra Smit; Jesse Stombaugh; Rob Knight
RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs.
J Gregory Caporaso; Sandra Smit; Brett C Easton; Lawrence Hunter; Gavin A Huttley; Rob Knight
Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.
Rob Knight; Peter Maxwell; Amanda Birmingham; Jason Carnes; J Gregory Caporaso; Brett C Easton; Michael Eaton; Micah Hamady; Helen Lindsay; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Michael Robeson; Raymond Sammut; Sandra Smit; Matthew J Wakefield; Jeremy Widmann; Shandy Wikman; Stephanie Wilson; Hua Ying; Gavin A Huttley
PyCogent: a toolkit for making sense from sequence.

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All Publications

2012: Jeremy Widmann; Shandy Wikman; Jesse R R Zaneveld; Jana Chocholousova; Paul Gardner; Matthew K Iyer; Zongzhi Liu; Catherine A Lozupone; Daniel McDonald; John Quinn; Sandra Smit; Jesse Stombaugh; Rob Knight
RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs.
RNA (New York, N.Y.) 2012;18(7):1319-27.
2008: J Gregory Caporaso; Sandra Smit; Brett C Easton; Lawrence Hunter; Gavin A Huttley; Rob Knight
Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.
BMC evolutionary biology 2008;8():327.
2007: Rob Knight; Peter Maxwell; Amanda Birmingham; Jason Carnes; J Gregory Caporaso; Brett C Easton; Michael Eaton; Micah Hamady; Helen Lindsay; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Michael Robeson; Raymond Sammut; Sandra Smit; Matthew J Wakefield; Jeremy Widmann; Shandy Wikman; Stephanie Wilson; Hua Ying; Gavin A Huttley
PyCogent: a toolkit for making sense from sequence.
Genome biology 2007;8(8):R171.
2007: Sandra Smit; Jeremy Widmann; Rob Knight
Evolutionary rates vary among rRNA structural elements.
Nucleic acids research 2007;35(10):3339-54.
2006: Sandra Smit; Michael Yarus; Rob Knight
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories.
RNA (New York, N.Y.) 2006;12(1):1-14.
2005: Rob Knight; Hans De Sterck; Rob Markel; Sandra Smit; Alexander Oshmyansky; Michael Yarus
Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids.
Nucleic acids research 2005;33(18):5924-35.

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