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Richard Smith

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Young-Mo Kim; Jason E McDermott; Thomas O Metz; Hugh D Mitchell; Bernhard O Palsson; Scott N Peterson; Brian Schmidt; Richard D Smith; Charles Ansong; Heather M Brewer; Brooke L Deatherage Kaiser; Fred Heffron; Daniel R Hyduke; Marcus B Jones; Afshan S Kidwai; Joshua N Adkins
Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.
Paul D Piehowski; Manuel Ramirez-Restrepo; Richard D Smith; Fang Xie; Roger L Albin; David G Camp; Anzhelika Engel; Andrew P Lieberman; Ronald J Moore; Daniel J Orton; Vladislav A Petyuk; Amanda J Myers
Sources of Technical Variability in Quantitative LC-MS Proteomics: Human Brain Tissue Sample Analysis.
George S Niemann; Richard D Smith; Afke Stufkens; Rukayat Taiwo; Joshua N Adkins; Roslyn N Brown; Jason E McDermott; Ivy T Mushamiri; Nhu T Nguyen; Fred Heffron
RNA Type III Secretion Signals That Require Hfq.

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All Publications

2013: Young-Mo Kim; Jason E McDermott; Thomas O Metz; Hugh D Mitchell; Bernhard O Palsson; Scott N Peterson; Brian Schmidt; Richard D Smith; Charles Ansong; Heather M Brewer; Brooke L Deatherage Kaiser; Fred Heffron; Daniel R Hyduke; Marcus B Jones; Afshan S Kidwai; Joshua N Adkins
Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.
Molecular bioSystems 2013;9(6):1522-34.
2013: Paul D Piehowski; Manuel Ramirez-Restrepo; Richard D Smith; Fang Xie; Roger L Albin; David G Camp; Anzhelika Engel; Andrew P Lieberman; Ronald J Moore; Daniel J Orton; Vladislav A Petyuk; Amanda J Myers
Sources of Technical Variability in Quantitative LC-MS Proteomics: Human Brain Tissue Sample Analysis.
Journal of proteome research 2013;12(5):2128-37.
2013: George S Niemann; Richard D Smith; Afke Stufkens; Rukayat Taiwo; Joshua N Adkins; Roslyn N Brown; Jason E McDermott; Ivy T Mushamiri; Nhu T Nguyen; Fred Heffron
RNA Type III Secretion Signals That Require Hfq.
Journal of bacteriology 2013;195(10):2119-25.
2013: Haythem Latif; Dae-Hee Lee; Joshua A Lerman; Harish Nagarajan; Vasiliy A Portnoy; Yu Qiu; Alexandra C Schrimpe-Rutledge; Richard D Smith; Yekaterina Tarasova; Joshua N Adkins; Karsten Zengler
The Genome Organization of Thermotoga maritima Reflects Its Lifestyle.
PLoS genetics 2013;9(4):e1003485.
2013: Dian Su; Karl Weitz; David G Camp; Yi Qu; Anil K Shukla; Richard D Smith; Uma Aryal; Diana J Bigelow; Baowei Chen; Therese R W Clauss; Jong-Seo Kim; Rohit N Kulkarni; Matthew E Monroe; Ernesto Nakayasu; Wei-Jun Qian
Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry.
Free radical biology & medicine 2013;57():68-78.
2013: Eric D Merkley; Daniel J Orton; Richard D Smith; Thomas Taverner; Gordon A Anderson; Charles Ansong; Erin Shammel Baker; Meagan C Burnet; John R Cort; Kevin L Crowell; Yehia M Ibrahim; Joshua N Adkins
Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking.
Journal of the American Society for Mass Spectrometry 2013;24(3):444-9.
2013: Paul D Piehowski; John D Sandoval; Gordon A Anderson; Kristin E Burnum; David G Camp; Gary R Kiebel; Matthew E Monroe; Vladislav A Petyuk; Richard D Smith
STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results.
Proteomics 2013;13(5):766-70.
2013: Jong-Seo Kim; Matthew E Monroe; David G Camp; Richard D Smith; Wei-Jun Qian
In-source fragmentation and the sources of partially tryptic peptides in shotgun proteomics.
Journal of proteome research 2013;12(2):910-6.
2013: Uma K Aryal; Stephen J Callister; David W Koppenaal; Sujata Mishra; Matthew E Monroe; Ronald J Moore; Anil K Shukla; Janani I Shutthanandan; Richard D Smith; Xiaohui Zhang; Thomas E Angel; Louis Sherman
Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production.
Applied and environmental microbiology 2013;79(4):1070-7.
2013: Melissa M Matzke; Jason E McDermott; Thomas O Metz; Joel G Pounds; Karin D Rodland; Anil K Shukla; Richard D Smith; Katrina M Waters; Joseph N Brown; Marina A Gritsenko; Bobbie-Jo M Webb-Robertson
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.
Proteomics 2013;13(3-4):493-503.
2013: Charles Ansong; Heather M Brewer; Sadhana Chauhan; Brooke L Deatherage Kaiser; Jennifer L Dubois; Bryan C Frank; Marcus B Jones; Young-Mo Kim; Kathleen McAteer; Jason E McDermott; Thomas O Metz; Hugh D Mitchell; Vladimir L Motin; Scott N Peterson; Alexandra C Schrimpe-Rutledge; Richard D Smith; Joshua N Adkins
A multi-omic systems approach to elucidating Yersinia virulence mechanisms.
Molecular bioSystems 2013;9(1):44-54.
2013: Charles Ansong; Lacie M Chauvignè-Hines; Suereta Fortuin; Christoph Grundner; Daniel H Haft; Michael P Lewis; Anja R Ollodart; Corrie Ortega; Samuel H Payne; Samuel O Purvine; Anil K Shukla; Richard D Smith; Joshua N Adkins; Aaron T Wright
Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis.
Chemistry & biology 2013;20(1):123-33.
2013: Qibin Zhang; Mark A Atkinson; Therese R W Clauss; Thomas L Fillmore; Marina A Gritsenko; Patricia W Mueller; Marian Rewers; Athena A Schepmoes; Richard D Smith; Thomas O Metz
Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes.
The Journal of experimental medicine 2013;210(1):191-203.
2013: Alexandre A Shvartsburg; Richard D Smith
High-resolution differential ion mobility spectrometry of a protein.
Analytical chemistry 2013;85(1):10-3.
2013: Brian L LaMarche; Thomas O Metz; Matthew E Monroe; Vladislav A Petyuk; Ashoka D Polpitiya; John D Sandoval; Anuj R Shah; Gordon A Anderson; Stephen J Callister; Kevin L Crowell; Navdeep Jaitly; Gary R Kiebel; Richard D Smith
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
BMC bioinformatics 2013;14():49.
2013: Alexandre A Shvartsburg; Gordon A Anderson; William F Danielson; Ronald J Moore; Randy Norheim; Tom A Seim; Richard D Smith
High-definition differential ion mobility spectrometry with resolving power up to 500.
Journal of the American Society for Mass Spectrometry 2013;24(1):109-14.
2013: Charles Ansong; Roslyn N Brown; Pep Charusanti; Sadhana Chauhan; Brooke L Deatherage; Fred Heffron; Daniel Hyduke; Marcus B Jones; Afshan Kidwai; Young-Mo Kim; Jie Li; Kathleen McAteer; Jason E McDermott; Thomas O Metz; Vladimir Motin; Ernesto S Nakayasu; George Niemann; Bernhard O Palsson; Scott N Peterson; Brian Schmidt; Richard D Smith; Joshua N Adkins
Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling.
Current topics in microbiology and immunology 2013;363():21-41.
2012: Lacie M Chauvigné-Hines; Beth A Hofstad; Phillip K Koech; Carrie D Nicora; Richard D Smith; Holly M Weaver; Michael J Wilkins; Lindsey N Anderson; Joseph N Brown; Stephen J Callister; Aaron T Wright
Suite of activity-based probes for cellulose-degrading enzymes.
Journal of the American Chemical Society 2012;134(50):20521-32.
2012: Chenchen Wang; Cheng S. Lee; Richard D Smith; Keqi Tang
Ultrasensitive sample quantitation via selected reaction monitoring using CITP/CZE-ESI-triple quadrupole MS.
Analytical chemistry 2012;84(23):10395-403.
2012: Ioan Marginean; Matthew E Monroe; Ronald J Moore; Gordon W Slysz; Gordon Anderson; Scott R Kronewitter; Keqi Tang; Richard D Smith
Improving N-glycan coverage using HPLC-MS with electrospray ionization at subambient pressure.
Analytical chemistry 2012;84(21):9208-13.
2012: Fang Xie; Richard D Smith; Yufeng Shen
Advanced proteomic liquid chromatography.
Journal of chromatography. A 2012;1261():78-90.
2012: Thomas E Angel; David G Camp; Susan Elias; Edward C Gilmore; Marina A Gritsenko; Jon M Jacobs; Carol McCarthy; Mark S Pasternack; Anil Shukla; Richard D Smith; Robert P Smith; H Shaw Warren
Cerebrospinal fluid proteome of patients with acute Lyme disease.
Journal of proteome research 2012;11(10):4814-22.
2012: Susan D Wiedner; Lindsey N Anderson; Charles Ansong; Kristin E Burnum; Lacie M Chauvigné-Hines; Suereta Fortuin; Ellen A Panisko; LeeAnna M Pederson; Anil K Shukla; Richard D Smith; Aaron T Wright
Multiplexed activity-based protein profiling of the human pathogen Aspergillus fumigatus reveals large functional changes upon exposure to human serum.
The Journal of biological chemistry 2012;287(40):33447-59.
2012: Tujin Shi; Richard D Smith; Xuefei Sun; Keqi Tang; Si Wu; Fang Xie; Rui Zhao; Ljiljana Pasa-Tolic; David G Camp; Thomas L Fillmore; Mahmud Hossain; Nathan Jones; Jacob Kagan; Jong-Seo Kim; Tao Liu; Ronald J Moore; Karin D Rodland; Athena A Schepmoes; Wei-Jun Qian
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(38):15395-400.
2012: Tom Taverner; Gordon A Anderson; Joseph N Brown; Alan R Dabney; Yuliya V Karpievitch; Ashoka D Polpitiya; Richard D Smith
DanteR: an extensible R-based tool for quantitative analysis of -omics data.
Bioinformatics (Oxford, England) 2012;28(18):2404-6.
2012: Alexandre A Shvartsburg; Richard D Smith
Protein analyses using differential ion mobility microchips with mass spectrometry.
Analytical chemistry 2012;84(17):7297-300.
2012: Frank O Aylward; Kerrie W Barry; Kristin E Burnum; Sandra M Adams; Lynne A Goodwin; Mary S Lipton; Carrie D Nicora; Paul D Piehowski; Samuel O Purvine; Jarrod J Scott; Richard D Smith; Gabriel J Starrett; Garret Suen; Susannah G Tringe; Cameron R Currie
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.
The ISME journal 2012;6(9):1688-701.
2012: Alexandre A Shvartsburg; Richard D Smith; Yupeng Zheng; Neil L Kelleher
Separation of variant methylated histone tails by differential ion mobility.
Analytical chemistry 2012;84(15):6317-20.
2012: Tao Liu; Wei-Jun Qian; Karin D Rodland; Athena A Schepmoes; Tujin Shi; Richard D Smith; Lori J Sokoll; Sudhir Srivastava; Ian M Thompson; Daniel W Chan; Thomas L Fillmore; Mahmud Hossain; Grant Izmirlian; Jacob Kagan; Scott R Kronewitter; Robin J Leach; David G Camp
Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests.
Journal of proteomics 2012;75(15):4747-57.
2012: Alexandra C Schrimpe-Rutledge; Richard D Smith; Katrina M Waters; Angela D Norbeck; Vincent Poitout; Joshua N Adkins; David J Anderson; Ghislaine Fontès; Marina A Gritsenko; Thomas O Metz
Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics.
Journal of proteome research 2012;11(7):3520-32.
2012: Aleksey V Tolmachev; Si Wu; Jean H Futrell; Errol W Robinson; Richard D Smith; Ljiljana Paša-Tolić
Angular averaged profiling of the radial electric field in compensated FTICR Cells.
Journal of the American Society for Mass Spectrometry 2012;23(7):1169-72.
2012: Deborah L Diamond; Jose Felipe Golib Dzib; Marina A Gritsenko; Jon M Jacobs; Sarah E Belisle; Arndt Benecke; Renuka Bhattacharya; Kristin E Burnum; David G Camp; Robert L Carithers; Alexei L Krasnoselsky; Anne M Larson; Iris W Liou; Jason E McDermott; Matthew E Monroe; James D Perkins; Sean C Proll; David E Purdy; Angela L Rasmussen; Richard D Smith; Susan Strom; Nathan Susnow; Kathie-Anne Walters; Katrina M Waters; Bobbie-Jo Webb-Robertson; Matthew M Yeh; Michael G Katze
Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation.
Hepatology (Baltimore, Md.) 2012;56(1):28-38.
2012: Xuan Wang; Richard D Smith; Gordon A Anderson; Alan R Dabney
A hybrid approach to protein differential expression in mass spectrometry-based proteomics.
Bioinformatics (Oxford, England) 2012;28(12):1586-91.
2012: Xiaowen Liu; Gordon Anderson; Vineet Bafna; David R Goodlett; Yufeng Shen; Yakov Sirotkin; Richard D Smith; Ying S Ting; Yihsuan S Tsai; Pavel A Pevzner
Protein identification using top-down.
Molecular & cellular proteomics : MCP 2012;11(6):M111.008524.
2012: Thomas E Angel; Uma K Aryal; Erin Shammel Baker; Shawna M Hengel; Ryan T Kelly; Errol W Robinson; Richard D Smith
Mass spectrometry-based proteomics: existing capabilities and future directions.
Chemical Society reviews 2012;41(10):3912-28.
2012: Joshua F Alfaro; David G Camp; Therese R W Clauss; Cheng-Xin Gong; Gerald W Hart; Donald F Hunt; Matthew E Monroe; Samuel O Purvine; Jeffrey Shabanowitz; Pamela Stanley; Zihao Wang; Feng Yang; Joshua T Aldrich; Richard D Smith
Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(19):7280-5.
2012: Feng Yang; Rui Zhao; Lye Meng Markillie; Josh T Aldrich; David G Camp; Marina A Gritsenko; Richard D Smith; Marianne B Sowa; Claere von Neubeck; Katrina M Waters; Bobbie-Jo M Webb-Robertson; Rachel M Wirgau; David L Stenoien
Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.
Experimental dermatology 2012;21(5):352-7.
2012: Tujin Shi; David G Camp; Tao Liu; Wei-Jun Qian; Dian Su; Keqi Tang; Richard D Smith
Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics.
Proteomics 2012;12(8):1074-92.
2012: Feng Yang; David G Camp; Yufeng Shen; Richard D Smith
High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis.
Expert review of proteomics 2012;9(2):129-34.
2012: Jian-Ying Zhou; David G Camp; Geoffrey P Dann; Xiaoli Gao; Tao Liu; Ronald J Moore; Carrie D Nicora; Tujin Shi; Anil K Shukla; Richard D Smith; Dian Su; Lu Wang; Wei-Jun Qian
Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.
Analytical chemistry 2012;84(6):2862-7.
2012: Xiaoli Gao; Zeping Hu; Giorgis Isaac; Michael G Katze; Da Meng; Ronald J Moore; Richard D Smith; Keqi Tang; Qibin Zhang; Rui Zhao; Jianying Zhou; Rosey K Chu; Thomas L Fillmore; Thomas O Metz
A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling.
Analytical and bioanalytical chemistry 2012;402(9):2923-33.
2012: Richard D Smith
Mass spectrometry in biomarker applications: from untargeted discovery to targeted verification, and implications for platform convergence and clinical application.
Clinical chemistry 2012;58(3):528-30.
2012: Li Cao; Mary S Lipton; Athena A Schepmoes; Richard D Smith; Kajetan Vogl; Donald A Bryant; Stephen J Callister
Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically.
Photosynthesis research 2012;110(3):153-68.
2012: Tujin Shi; Richard D Smith; Jian-Ying Zhou; David G Camp; Marina A Gritsenko; Mahmud Hossain; Wei-Jun Qian
IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography-mass spectrometry for human plasma proteomics biomarker discovery.
Methods (San Diego, Calif.) 2012;56(2):246-53.
2012: Yuliya V Karpievitch; Alan R Dabney; Richard D Smith
Normalization and missing value imputation for label-free LC-MS analysis.
BMC bioinformatics 2012;13 Suppl 16():S5.
2012: Natalie C Sadler; Richard D Smith; Susan D Wiedner; Thomas E Angel; Lacie M Chauvigné-Hines; Michael P Lewis; Leeanna M Pederson; Erika M Zink; Aaron T Wright
Activity-based protein profiling reveals mitochondrial oxidative enzyme impairment and restoration in diet-induced obese mice.
PloS one 2012;7(10):e47996.
2012: Roslyn N Brown; Boyd L Champion; Brooke L Deatherage; Fred Heffron; Jea H Park; James A Sanford; Richard D Smith; Joshua N Adkins
A Comprehensive Subcellular Proteomic Survey of Salmonella Grown under Phagosome-Mimicking versus Standard Laboratory Conditions.
International journal of proteomics 2012;2012():123076.
2012: Joshua A Lerman; Nathan E Lewis; Jeffrey D Orth; Vasiliy A Portnoy; Alexandra C Schrimpe-Rutledge; Richard D Smith; Karsten Zengler; Joshua N Adkins; Daniel R Hyduke; Haythem Latif; Bernhard O Palsson
In silico method for modelling metabolism and gene product expression at genome scale.
Nature communications 2012;3():929.
2012: Aarash Bordbar; Bryan C Frank; Daniel R Hyduke; Marcus B Jones; Young-Mo Kim; Thomas O Metz; Monica L Mo; Ernesto S Nakayasu; Scott N Peterson; Alexandra C Schrimpe-Rutledge; Richard D Smith; Joshua N Adkins; Bernhard O Palsson
Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.
Molecular systems biology 2012;8():558.
2012: Alexandra C Schrimpe-Rutledge; Richard D Smith; Charles Ansong; Heather M Brewer; Sadhana Chauhan; Bryan C Frank; Marcus B Jones; Matthew E Monroe; Vladimir L Motin; Samuel H Payne; Scott N Peterson; Samuel O Purvine; James A Sanford; Joshua N Adkins
Comparative omics-driven genome annotation refinement: application across Yersiniae.
PloS one 2012;7(3):e33903.
2012: Thomas E Angel; David G Camp; Dietmar Fuchs; Marina A Gritsenko; Jon M Jacobs; Teri Liegler; Richard W Price; Serena S Spudich; Henrik Zetterberg; Richard D Smith
The cerebrospinal fluid proteome in HIV infection: change associated with disease severity.
Clinical proteomics 2012;9(1):3.
2011: Jong-Seo Kim; Tao Liu; Ronald J Moore; David G Camp; Boyd L Champion; Thomas L Fillmore; Mahmud Hossain; Errol Robinson; Richard D Smith; Wei-Jun Qian
18O-labeled proteome reference as global internal standards for targeted quantification by selected reaction monitoring-mass spectrometry.
Molecular & cellular proteomics : MCP 2011;10(12):M110.007302.
2011: Haizhen Zhang; Kristin E Burnum; David G Camp; Alejandro Heredia-Langner; Jong-Seo Kim; Maria L Luna; Ronald J Moore; Brianne O Petritis; Joel G Pounds; Wei-Jun Qian; Richard D Smith; Brian D Thrall; Bobbie-Jo M Webb-Robertson; Tao Liu
Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.
Proteomics 2011;11(23):4569-77.
2011: Angela L Rasmussen; Richard D Smith; Katrina M Waters; Sarah E Belisle; Victoria S Carter; Deborah L Diamond; Xiaoli Gao; Marcus J Korth; Melissa M Matzke; Jason E McDermott; Thomas O Metz; Michael G Katze
Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis.
Journal of virology 2011;85(22):11646-54.
2011: Haizhen Zhang; Eric D Merkley; Roslyn N Brown; James K Fredrickson; Eric E Merkley; Matthew Monroe; Ronald J Moore; Jea H Park; Ljiljana Paša-Tolić; Samuel O Purvine; Wei-Jun Qian; Liang Shi; Richard D Smith; Yuexi Wang; Feng Yang; Mary S Lipton
Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation.
Analytical chemistry 2011;83(19):7260-8.
2011: Alexandre A Shvartsburg; Richard D Smith; Andrew J Creese; Helen J Cooper
Separation of a set of peptide sequence isomers using differential ion mobility spectrometry.
Analytical chemistry 2011;83(18):6918-23.
2011: Yufeng Shen; Nikola Tolić; Fang Xie; Rui Zhao; Gordon A Anderson; Ronald J Moore; Samuel O Purvine; Athena A Schepmoes; Richard D Smith
Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
Journal of proteome research 2011;10(9):3929-43.
2011: Jeffrey R Stanley; Joshua N Adkins; Gordon A Anderson; Yuliya V Karpievitch; Matthew E Monroe; Samuel O Purvine; Gordon W Slysz; Richard D Smith; Alan R Dabney
A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics.
Analytical chemistry 2011;83(16):6135-40.
2011: Aleksey V Tolmachev; Si Wu; Errol W Robinson; Richard D Smith; Ljiljana Paša-Toli
Trapping radial electric field optimization in compensated FTICR cells.
Journal of the American Society for Mass Spectrometry 2011;22(8):1334-42.
2011: Keqi Tang; Ryan T Kelly; Ioan Marginean; Jason S Page; Richard D Smith
Improving liquid chromatography-mass spectrometry sensitivity using a subambient pressure ionization with nanoelectrospray (SPIN) interface.
Journal of the American Society for Mass Spectrometry 2011;22(8):1318-25.
2011: Jian-Ying Zhou; Richard D Smith; Geoffrey P Dann; Rohit N Kulkarni; Chong Wee Liew; Wei-Jun Qian
Unraveling pancreatic islet biology by quantitative proteomics.
Expert review of proteomics 2011;8(4):495-504.
2011: Alexandre A Shvartsburg; Richard D Smith; Giorgis Isaac; Nathalie Leveque; Thomas O Metz
Separation and classification of lipids using differential ion mobility spectrometry.
Journal of the American Society for Mass Spectrometry 2011;22(7):1146-55.
2011: Alexandre A Shvartsburg; David Singer; Richard D Smith; Ralf Hoffmann
Ion mobility separation of isomeric phosphopeptides from a protein with variant modification of adjacent residues.
Analytical chemistry 2011;83(13):5078-85.
2011: Qibin Zhang; Therese R W Clauss; Marina A Gritsenko; Da Meng; Matthew Monroe; Vladislav A Petyuk; Athena A Schepmoes; Richard D Smith; Tom Metz
Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects.
Journal of proteome research 2011;10(7):3076-88.
2011: Ari M Frank; Matthew E Monroe; Ronald J Moore; Gordon A Anderson; Nuno Bandeira; Jeremy J Carver; Anuj R Shah; Richard D Smith; Pavel A Pevzner
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
Nature methods 2011;8(7):587-91.
2011: Rachel M Gonzalez; Qibin Zhang; Richard C Zangar; Richard D Smith; Tom Metz
Development of a fibrinogen-specific sandwich enzyme-linked immunosorbent assay microarray assay for distinguishing between blood plasma and serum samples.
Analytical biochemistry 2011;414(1):99-102.
2011: Anatole Ghazalpour; Raffi Hagopian; Hyun M Kang; Todd Kirchgessner; Brian Bennett; Heather Brewer; David G Camp; Eleazar Eskin; Charles Farber; Nicholas Furlotte; Peter Gargalovic; Imran N Mungrue; Isaac Neuhaus; Luz Orozco; Calvin Pan; Christopher C Park; Vladislav A Petyuk; Nathan Siemers; Janet Sinsheimer; Desmond J Smith; Richard D Smith; Charles Tilford; Karl Weitz; Ping-Zi Wen; Roumyana Yordanova; Aldons J Lusis
Comparative analysis of proteome and transcriptome variation in mouse.
PLoS genetics 2011;7(6):e1001393.
2011: Xuefei Sun; Keqi Tang; Nitin Agrawal; William F Danielson; Ryan T Kelly; Richard D Smith
Hydrodynamic injection with pneumatic valving for microchip electrophoresis with total analyte utilization.
Electrophoresis 2011;32(13):1610-8.
2011: Anil Shukla; Rui Zhang; Daniel J Orton; Rui Zhao; Therese R W Clauss; Ronald Moore; Richard D Smith
Formation of iron complexes from trifluoroacetic acid based liquid chromatography mobile phases as interference ions in liquid chromatography/electrospray ionization mass spectrometric analysis.
Rapid communications in mass spectrometry : RCM 2011;25(10):1452-6.
2011: Yingchun Wang; Feng Yang; Yi Fu; Xiahe Huang; Wei Wang; Xinning Jiang; Marina A Gritsenko; Rui Zhao; Matthew E Monore; Olivier Pertz; Samuel O Purvine; Daniel J Orton; Jon M Jacobs; David G Camp; Richard D Smith; Richard L Klemke
Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction.
The Journal of biological chemistry 2011;286(20):18190-201.
2011: Yuexi Wang; Feng Yang; Marina A Gritsenko; Yingchun Wang; Therese Clauss; Tao Liu; Yufeng Shen; Matthew Monroe; Daniel Lopez-Ferrer; Theresa Reno; Ronald J Moore; Richard L Klemke; David G Camp; Richard D Smith
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells.
Proteomics 2011;11(10):2019-26.
2011: Mikhail E Belov; Satendra Prasad; David C Prior; William F Danielson; Karl Weitz; Yehia M Ibrahim; Richard D Smith
Pulsed multiple reaction monitoring approach to enhancing sensitivity of a tandem quadrupole mass spectrometer.
Analytical chemistry 2011;83(6):2162-71.
2011: Xiuxia Du; Saiful M Chowdhury; Nathan P Manes; Si Wu; M Uljana Mayer; Joshua N Adkins; Gordon A Anderson; Richard D Smith
Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.
Journal of proteome research 2011;10(3):923-31.
2011: Daniel López-Ferrer; Konstantinos Petritis; Errol W Robinson; Kim K Hixson; Zhixin Tian; Jung Hwa Lee; Sang-Won Lee; Nikola Tolić; Karl K Weitz; Mikhail E Belov; Richard D Smith; Ljiljana Pasa-Tolić
Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics.
Molecular & cellular proteomics : MCP 2011;10(2):M110.001479.
2011: Mahmud Hossain; David T Kaleta; Errol W Robinson; Tao Liu; Rui Zhao; Jason S Page; Ryan T Kelly; Ronald J Moore; Keqi Tang; David G Camp; Wei-Jun Qian; Richard D Smith
Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.
Molecular & cellular proteomics : MCP 2011;10(2):M000062-MCP201.
2011: Uma K Aryal; Marina A Gritsenko; David W Koppenaal; Ravi K Krovvidi; Matthew E Monroe; Ronald J Moore; Himadri B Pakrasi; Richard D Smith; Jana Stöckel; Jon M Jacobs
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles.
BMC systems biology 2011;5():194.
2011: Charles Ansong; Meagan C Burnet; Fred Heffron; Marcus Jones; Jessica L Martin; Michael McClelland; Matthew E Monroe; Samuel H Payne; Scott N Peterson; Steffen Porwollik; Samuel O Purvine; Richard D Smith; Nikola Tolić; Pratap Venepally; Hyunjin Yoon; Joshua N Adkins
Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.
BMC genomics 2011;12():433.
2011: Hyunjin Yoon; Charles Ansong; Marina A Gritsenko; Fred Heffron; Jason E McDermott; Richard D Smith; Joshua N Adkins
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.
BMC systems biology 2011;5():100.
2011: Wei-Jun Qian; Brianne O Petritis; Carrie D Nicora; Richard D Smith
Trypsin-catalyzed oxygen-18 labeling for quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) 2011;753():43-54.
2011: Alexandre A Shvartsburg; Richard D Smith
Ultrahigh-resolution differential ion mobility spectrometry using extended separation times.
Analytical chemistry 2011;83(1):23-9.
2011: George S Niemann; Roslyn N Brown; Jean K Gustin; Afke Stufkens; Afshan S Shaikh-Kidwai; Jie Li; Jason E McDermott; Heather M Brewer; Athena Schepmoes; Richard D Smith; Joshua N Adkins; Fred Heffron
Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants.
Infection and immunity 2011;79(1):33-43.
2011: Kristin E Burnum; Stephen J Callister; Carrie D Nicora; Samuel O Purvine; Philip Hugenholtz; Falk Warnecke; Rudolf H Scheffrahn; Richard D Smith; Mary S Lipton
Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
The ISME journal 2011;5(1):161-4.
2010: Stephen J Callister; Michael J Wilkins; Carrie D Nicora; Kenneth H Williams; Jillian F Banfield; Nathan C VerBerkmoes; Robert L Hettich; Lucie N'Guessan; Paula J Mouser; Hila Elifantz; Richard D Smith; Derek R Lovley; Mary S Lipton; Philip E Long
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.
Environmental science & technology 2010;44(23):8897-903.
2010: Garry W Buchko; George Niemann; Erin S Baker; Mikhail E Belov; Richard D Smith; Fred Heffron; Joshua N Adkins; Jason E McDermott
A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins.
Molecular bioSystems 2010;6(12):2448-58.
2010: Ioan Marginean; Jason S Page; Aleksey V Tolmachev; Keqi Tang; Richard D Smith
Achieving 50% ionization efficiency in subambient pressure ionization with nanoelectrospray.
Analytical chemistry 2010;82(22):9344-9.
2010: Jian-Ying Zhou; Athena A Schepmoes; Xu Zhang; Ronald J Moore; Matthew E Monroe; Jung Hwa Lee; David G Camp; Richard D Smith; Wei-Jun Qian
Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences.
Journal of proteome research 2010;9(11):5698-704.
2010: Zhixin Tian; Rui Zhao; Nikola Tolić; Ronald J Moore; David L Stenoien; Errol W Robinson; Richard D Smith; Ljiljana Paša-Tolić
Two-dimensional liquid chromatography system for online top-down mass spectrometry.
Proteomics 2010;10(20):3610-20.
2010: Alexandre A Shvartsburg; Andrew J Creese; Richard D Smith; Helen J Cooper
Separation of peptide isomers with variant modified sites by high-resolution differential ion mobility spectrometry.
Analytical chemistry 2010;82(19):8327-34.
2010: Alexandre A Shvartsburg; David E Clemmer; Richard D Smith
Isotopic effect on ion mobility and separation of isotopomers by high-field ion mobility spectrometry.
Analytical chemistry 2010;82(19):8047-51.
2010: Anuj R Shah; Jennifer Davidson; Matthew E Monroe; Anoop M Mayampurath; William F Danielson; Yan Shi; Aaron C Robinson; Brian H Clowers; Mikhail E Belov; Gordon A Anderson; Richard D Smith
An efficient data format for mass spectrometry-based proteomics.
Journal of the American Society for Mass Spectrometry 2010;21(10):1784-8.
2010: Lawrence True; Hui Zhang; Mingliang Ye; Chung-Ying Huang; Peter S Nelson; Priska D von Haller; Larry W Tjoelker; Jong-Seo Kim; Wei-Jun Qian; Richard D Smith; William J Ellis; Emily S Liebeskind; Alvin Y Liu
CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2010;23(10):1346-56.
2010: Alexandre A Shvartsburg; David C Prior; Keqi Tang; Richard D Smith
High-resolution differential ion mobility separations using planar analyzers at elevated dispersion fields.
Analytical chemistry 2010;82(18):7649-55.
2010: Wei-Jun Qian; Brianne O Petritis; Amit Kaushal; Celeste C Finnerty; Marc G Jeschke; Matthew E Monroe; Ronald J Moore; Athena A Schepmoes; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David N Herndon; David G Camp; Richard D Smith
Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics.
Journal of proteome research 2010;9(9):4779-89.
2010: Roslyn N Brown; Margaret F Romine; Athena A Schepmoes; Richard D Smith; Mary S Lipton
Mapping the subcellular proteome of Shewanella oneidensis MR-1 using sarkosyl-based fractionation and LC-MS/MS protein identification.
Journal of proteome research 2010;9(9):4454-63.
2010: Xuefei Sun; Ryan T Kelly; Keqi Tang; Richard D Smith
Ultrasensitive nanoelectrospray ionization-mass spectrometry using poly(dimethylsiloxane) microchips with monolithically integrated emitters.
The Analyst 2010;135(9):2296-302.
2010: Yufeng Shen; Nikola Tolić; Samuel O Purvine; Richard D Smith
Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach.
Journal of proteome research 2010;9(8):4053-60.
2010: N Gupta; Kim K Hixson; David E Culley; Richard D Smith; Pavel A Pevzner
Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.
Proteomics 2010;10(15):2833-44.
2010: Christina M Sorensen; Jie Ding; Qibin Zhang; Thierry Alquier; Rui Zhao; Patricia W Mueller; Richard D Smith; Tom Metz
Perturbations in the lipid profile of individuals with newly diagnosed type 1 diabetes mellitus: lipidomics analysis of a Diabetes Antibody Standardization Program sample subset.
Clinical biochemistry 2010;43(12):948-56.
2010: Nathan E Lewis; Kim K Hixson; Tom M Conrad; Joshua A Lerman; Pep Charusanti; Ashoka D Polpitiya; Joshua N Adkins; Gunnar Schramm; Samuel O Purvine; Daniel Lopez-Ferrer; Karl K Weitz; Roland Eils; Rainer König; Richard D Smith; Bernhard Ø Palsson
Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.
Molecular systems biology 2010;6():390.
2010: Anuj R Shah; Khushbu Agarwal; Erin S Baker; Mudita Singhal; Anoop M Mayampurath; Yehia M Ibrahim; Lars J Kangas; Matthew E Monroe; Rui Zhao; Mikhail E Belov; Gordon A Anderson; Richard D Smith
Machine learning based prediction for peptide drift times in ion mobility spectrometry.
Bioinformatics (Oxford, England) 2010;26(13):1601-7.
2010: Zhiwen Tang; Hong Wu; Dan Du; Jun Wang; Hua Wang; Wei-Jun Qian; Diana J Bigelow; Joel G Pounds; Richard D Smith; Yuehe Lin
Sensitive immunoassays of nitrated fibrinogen in human biofluids.
Talanta 2010;81(4-5):1662-9.
2010: Natacha Lourette; Heather Smallwood; Si Wu; Errol W Robinson; Thomas C Squier; Richard D Smith; Ljiljana Pasa-Tolić
A top-down LC-FTICR MS-based strategy for characterizing oxidized calmodulin in activated macrophages.
Journal of the American Society for Mass Spectrometry 2010;21(6):930-9.
2010: Xu Zhang; Matthew Monroe; Baowei Chen; Mark H Chin; Tyler H Heibeck; Athena A Schepmoes; Feng Yang; Brianne O Petritis; David G Camp; Joel G Pounds; Jon M Jacobs; Desmond J Smith; Diana J Bigelow; Richard D Smith; Wei-Jun Qian
Endogenous 3,4-dihydroxyphenylalanine and dopaquinone modifications on protein tyrosine: links to mitochondrially derived oxidative stress via hydroxyl radical.
Molecular & cellular proteomics : MCP 2010;9(6):1199-208.
2010: Haizhen Zhang; Roslyn N Brown; Wei-Jun Qian; Matthew Monroe; Samuel O Purvine; Ronald J Moore; Marina A Gritsenko; Liang Shi; Margaret F Romine; James K Fredrickson; Ljiljana Pasa-Tolić; Richard D Smith; Mary S Lipton
Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.
Journal of proteome research 2010;9(5):2160-9.
2010: Yufeng Shen; Tao Liu; Nikola Tolić; Brianne O Petritis; Rui Zhao; Ronald J Moore; Samuel O Purvine; David G Camp; Richard D Smith
Strategy for degradomic-peptidomic analysis of human blood plasma.
Journal of proteome research 2010;9(5):2339-46.
2010: Alexandre A Shvartsburg; William F Danielson; Richard D Smith
High-resolution differential ion mobility separations using helium-rich gases.
Analytical chemistry 2010;82(6):2456-62.
2010: Xu Zhang; Jian-Ying Zhou; Mark Chin; Athena A Schepmoes; Vladislav A Petyuk; Karl K Weitz; Brianne O Petritis; Matthew Monroe; David G Camp; Stephen A Wood; William P Melega; Diana J Bigelow; Desmond J Smith; Wei-Jun Qian; Richard D Smith
Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model.
Journal of proteome research 2010;9(3):1496-509.
2010: Vladislav A Petyuk; Anoop M Mayampurath; Matthew Monroe; Ashoka D Polpitiya; Samuel O Purvine; Gordon A Anderson; David G Camp; Richard D Smith
DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.
Molecular & cellular proteomics : MCP 2010;9(3):486-96.
2010: Ryan T Kelly; Aleksey V Tolmachev; Jason S Page; Keqi Tang; Richard D Smith
The ion funnel: theory, implementations, and applications.
Mass spectrometry reviews 2010;29(2):294-312.
2010: Bryan M Ham; Hemalatha Jayachandran; Feng Yang; Navdeep Jaitly; Ashoka D Polpitiya; Matthew Monroe; Ling Wang; Rui Zhao; Samuel O Purvine; Eric A Livesay; David G Camp; Sandra Rossie; Richard D Smith
Novel Ser/Thr protein phosphatase 5 (PP5) regulated targets during DNA damage identified by proteomics analysis.
Journal of proteome research 2010;9(2):945-53.
2010: Erin Shammel Baker; Eric A Livesay; Daniel J Orton; Ronald J Moore; William F Danielson; David C Prior; Yehia M Ibrahim; Brian L LaMarche; Anoop M Mayampurath; Athena A Schepmoes; Derek F Hopkins; Keqi Tang; Richard D Smith; Mikhail E Belov
An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.
Journal of proteome research 2010;9(2):997-1006.
2010: Vladislav A Petyuk; Wei-Jun Qian; Richard D Smith; Desmond J Smith
Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry.
Methods (San Diego, Calif.) 2010;50(2):77-84.
2010: Feng Yang; Katrina M Waters; John H Miller; Marina A Gritsenko; Rui Zhao; Xiuxia Du; Eric A Livesay; Samuel O Purvine; Matthew Monroe; Yingchun Wang; David G Camp; Richard D Smith; David L Stenoien
Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation.
PloS one 2010;5(11):e14152.
2010: Thomas E Angel; Benjamin J Luft; Xiaohua Yang; Carrie D Nicora; David G Camp; Jon M Jacobs; Richard D Smith
Proteome analysis of Borrelia burgdorferi response to environmental change.
PloS one 2010;5(11):e13800.
2010: Yufeng Shen; Nikola Tolić; Tao Liu; Rui Zhao; Brianne O Petritis; Marina A Gritsenko; David G Camp; Ronald J Moore; Samuel O Purvine; Francisco J Esteva; Richard D Smith
Blood peptidome-degradome profile of breast cancer.
PloS one 2010;5(10):e13133.
2010: Joshua N Adkins; Heather M Mottaz; Thomas O Metz; Charles Ansong; Nathan P Manes; Richard D Smith; Fred Heffron
Performing comparative peptidomics analyses of Salmonella from different growth conditions.
Methods in molecular biology (Clifton, N.J.) 2010;615():13-27.
2009: Athena A Schepmoes; Qibin Zhang; Brianne O Petritis; Wei-Jun Qian; Richard D Smith
N-terminal enrichment: developing a protocol to detect specific proteolytic fragments.
Journal of biomolecular techniques : JBT 2009;20(5):263-5.
2009: Jason S Page; Ioan Marginean; Erin Shammel Baker; Ryan T Kelly; Keqi Tang; Richard D Smith
Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet.
Journal of the American Society for Mass Spectrometry 2009;20(12):2265-72.
2009: Satendra Prasad; Keqi Tang; David Manura; Dimitris Papanastasiou; Richard D Smith
Simulation of ion motion in FAIMS through combined use of SIMION and modified SDS.
Analytical chemistry 2009;81(21):8749-57.
2009: Jian-Ying Zhou; Brianne O Petritis; Konstantinos Petritis; Angela D Norbeck; Karl K Weitz; Ronald J Moore; David G Camp; Rohit N Kulkarni; Richard D Smith; Wei-Jun Qian
Mouse-specific tandem IgY7-SuperMix immunoaffinity separations for improved LC-MS/MS coverage of the plasma proteome.
Journal of proteome research 2009;8(11):5387-95.
2009: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith; Martin Holden; Martyn Rush; Andrew Thompson; Danielle Toutoungi
Ultrafast differential ion mobility spectrometry at extreme electric fields coupled to mass spectrometry.
Analytical chemistry 2009;81(19):8048-53.
2009: Ridha Mabrouki; Ryan T Kelly; David C Prior; Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Improving FAIMS sensitivity using a planar geometry with slit interfaces.
Journal of the American Society for Mass Spectrometry 2009;20(9):1768-74.
2009: Eric Y Chan; Jennifer N Sutton; Jon M Jacobs; Andrey Bondarenko; Richard D Smith; Michael G Katze
Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry.
Journal of virology 2009;83(18):9283-95.
2009: Yuliya Karpievitch; Jeff Stanley; Thomas Taverner; Jianhua Huang; Joshua N Adkins; Charles Ansong; Fred Heffron; Thomas O Metz; Wei-Jun Qian; Hyunjin Yoon; Richard D Smith; Alan R Dabney
A statistical framework for protein quantitation in bottom-up MS-based proteomics.
Bioinformatics (Oxford, England) 2009;25(16):2028-34.
2009: Alexandre A Shvartsburg; Richard D Smith; Ashley Wilks; Andrew Koehl; David Ruiz-Alonso; Billy Boyle
Ultrafast differential ion mobility spectrometry at extreme electric fields in multichannel microchips.
Analytical chemistry 2009;81(15):6489-95.
2009: Daniel López-Ferrer; Kim K Hixson; Heather Smallwood; Thomas C Squier; Konstantinos Petritis; Richard D Smith
Evaluation of a high-intensity focused ultrasound-immobilized trypsin digestion and 18O-labeling method for quantitative proteomics.
Analytical chemistry 2009;81(15):6272-7.
2009: Tyler H Heibeck; Shi-Jian Ding; Lee K Opresko; Rui Zhao; Athena A Schepmoes; Feng Yang; Aleksey V Tolmachev; Matthew Monroe; David G Camp; Richard D Smith; H Steven Wiley; Wei-Jun Qian
An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells.
Journal of proteome research 2009;8(8):3852-61.
2009: Liang Shi; Saiful M Chowdhury; Heather S Smallwood; Hyunjin Yoon; Heather M Mottaz-Brewer; Angela D Norbeck; Jason E McDermott; Therese R W Clauss; Fred Heffron; Richard D Smith; Joshua N Adkins
Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica.
Infection and immunity 2009;77(8):3227-33.
2009: Saiful M Chowdhury; Xiuxia Du; Nikola Tolić; Si Wu; Ronald J Moore; M Uljana Mayer; Richard D Smith; Joshua N Adkins
Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry.
Analytical chemistry 2009;81(13):5524-32.
2009: Aleksey V Tolmachev; Brian H Clowers; Mikhail E Belov; Richard D Smith
Coulombic effects in ion mobility spectrometry.
Analytical chemistry 2009;81(12):4778-87.
2009: Christopher C Park; Vladislav A Petyuk; Wei-Jun Qian; Richard D Smith; Desmond J Smith
Dual spatial maps of transcript and protein abundance in the mouse brain.
Expert review of proteomics 2009;6(3):243-9.
2009: Si Wu; Feng Yang; Rui Zhao; Nikola Tolić; Errol W Robinson; David G Camp; Richard D Smith; Ljiljana Pasa-Tolić
Integrated workflow for characterizing intact phosphoproteins from complex mixtures.
Analytical chemistry 2009;81(11):4210-9.
2009: Feng Yang; Si Wu; David L Stenoien; Rui Zhao; Matthew Monroe; Marina A Gritsenko; Samuel O Purvine; Ashoka D Polpitiya; Nikola Tolić; Qibin Zhang; Angela D Norbeck; Daniel J Orton; Ronald J Moore; Keqi Tang; Gordon A Anderson; Ljiljana Pasa-Tolić; David G Camp; Richard D Smith
Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides.
Analytical chemistry 2009;81(10):4137-43.
2009: Brianne O Petritis; Wei-Jun Qian; David G Camp; Richard D Smith
A simple procedure for effective quenching of trypsin activity and prevention of 18O-labeling back-exchange.
Journal of proteome research 2009;8(5):2157-63.
2009: Alexandre A Shvartsburg; Sergei Y Noskov; Randy W Purves; Richard D Smith
Pendular proteins in gases and new avenues for characterization of macromolecules by ion mobility spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(16):6495-500.
2009: Ioan Marginean; Ryan T Kelly; Ronald J Moore; David C Prior; Brian L LaMarche; Keqi Tang; Richard D Smith
Selection of the optimum electrospray voltage for gradient elution LC-MS measurements.
Journal of the American Society for Mass Spectrometry 2009;20(4):682-8.
2009: Rui Zhao; Shi-Jian Ding; Yufeng Shen; David G Camp; Eric A Livesay; Harold R Udseth; Richard D Smith
Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2009;877(8-9):663-70.
2009: Si Wu; Natacha M Lourette; Nikola Tolić; Rui Zhao; Errol W Robinson; Aleksey V Tolmachev; Richard D Smith; Ljiljana Pasa-Tolić
An integrated top-down and bottom-up strategy for broadly characterizing protein isoforms and modifications.
Journal of proteome research 2009;8(3):1347-57.
2009: Saiful M Chowdhury; Liang Shi; Hyunjin Yoon; Charles Ansong; Leah M Rommereim; Angela D Norbeck; Kenneth J Auberry; Ronald J Moore; Joshua N Adkins; Fred Heffron; Richard D Smith
A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis.
Journal of proteome research 2009;8(3):1504-14.
2009: Qibin Zhang; Jennifer M Ames; Richard D Smith; John W Baynes; Thomas O Metz
A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease.
Journal of proteome research 2009;8(2):754-69.
2009: Jeongkwon Kim; Rui Zhang; Eric F Strittmatter; Richard D Smith; Robert Zand
Post-translational modifications of chicken myelin basic protein charge components.
Neurochemical research 2009;34(2):360-72.
2009: Ryan T Kelly; Jason S Page; Ioan Marginean; Keqi Tang; Richard D Smith
Dilution-free analysis from picoliter droplets by nano-electrospray ionization mass spectrometry.
Angewandte Chemie (International ed. in English) 2009;48(37):6832-5.
2009: Navdeep Jaitly; Anoop Mayampurath; Kyle Littlefield; Joshua N Adkins; Gordon A Anderson; Richard D Smith
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
BMC bioinformatics 2009;10():87.
2009: Charles Ansong; Hyunjin Yoon; Steffen Porwollik; Heather Mottaz-Brewer; Brianne O Petritis; Navdeep Jaitly; Joshua N Adkins; Michael McClelland; Fred Heffron; Richard D Smith
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation.
PloS one 2009;4(3):e4809.
2009: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Two-dimensional ion mobility analyses of proteins and peptides.
Methods in molecular biology (Clifton, N.J.) 2009;492():417-45.
2009: Wei-Jun Qian; Tao Liu; Vladislav A Petyuk; Marina A Gritsenko; Brianne O Petritis; Ashoka D Polpitiya; Amit Kaushal; wenzhong xiao; Celeste C Finnerty; Marc G Jeschke; Navdeep Jaitly; Matthew Monroe; Ronald J Moore; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David N Herndon; David G Camp; Richard D Smith
Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.
Journal of proteome research 2009;8(1):290-9.
2008: Qibin Zhang; Athena A Schepmoes; Jonathan W C Brock; Si Wu; Ronald J Moore; Samuel O Purvine; John W Baynes; Richard D Smith; Tom Metz
Improved methods for the enrichment and analysis of glycated peptides.
Analytical chemistry 2008;80(24):9822-9.
2008: Alexandre A Shvartsburg; Richard D Smith
Fundamentals of traveling wave ion mobility spectrometry.
Analytical chemistry 2008;80(24):9689-99.
2008: Daniel López-Ferrer; Konstantinos Petritis; Natacha M Lourette; Brian Clowers; Kim K Hixson; Tyler Heibeck; David C Prior; Ljiljana Pasa-Tolić; David G Camp; Mikhail E Belov; Richard D Smith
On-line digestion system for protein characterization and proteome analysis.
Analytical chemistry 2008;80(23):8930-6.
2008: Yan-Huai R Ding; Kim K Hixson; Muktak A Aklujkar; Mary S Lipton; Richard D Smith; Derek R Lovley; Tünde Mester
Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.
Biochimica et biophysica acta 2008;1784(12):1935-41.
2008: Yufeng Shen; Nikola Tolić; Kim K Hixson; Samuel O Purvine; Gordon A Anderson; Richard D Smith
De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.
Analytical chemistry 2008;80(20):7742-54.
2008: Qibin Zhang; Vladislav A Petyuk; Athena A Schepmoes; Daniel J Orton; Matthew Monroe; Feng Yang; Richard D Smith; Tom Metz
Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry.
Rapid communications in mass spectrometry : RCM 2008;22(19):3027-34.
2008: Errol W Robinson; Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Control of ion distortion in field asymmetric waveform ion mobility spectrometry via variation of dispersion field and gas temperature.
Analytical chemistry 2008;80(19):7508-15.
2008: Wei-Jun Qian; David T Kaleta; Brianne O Petritis; Hongliang Jiang; Tao Liu; Xu Zhang; Heather M Mottaz; Susan M Varnum; David G Camp; Lei Huang; Xiangming Fang; Wei-Wei Zhang; Richard D Smith
Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy.
Molecular & cellular proteomics : MCP 2008;7(10):1963-73.
2008: Daniel López-Ferrer; Tyler H Heibeck; Konstantinos Petritis; Kim K Hixson; Weijun Qian; Matthew Monroe; Anoop Mayampurath; Ronald J Moore; Mikhail E Belov; David G Camp; Richard D Smith
Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound.
Journal of proteome research 2008;7(9):3860-7.
2008: Ioan Marginean; Ryan T Kelly; David C Prior; Brian L LaMarche; Keqi Tang; Richard D Smith
Analytical characterization of the electrospray ion source in the nanoflow regime.
Analytical chemistry 2008;80(17):6573-9.
2008: Alexandre A Shvartsburg; Richard D Smith
Optimum waveforms for differential ion mobility spectrometry (FAIMS).
Journal of the American Society for Mass Spectrometry 2008;19(9):1286-95.
2008: Jie Ding; Christina M Sorensen; Navdeep Jaitly; Hongliang Jiang; Daniel J Orton; Matthew Monroe; Ronald J Moore; Richard D Smith; Tom Metz
Application of the accurate mass and time tag approach in studies of the human blood lipidome.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2008;871(2):243-52.
2008: Daniel López-Ferrer; Konstantinos Petritis; Kim K Hixson; Tyler H Heibeck; Ronald J Moore; Mikhail E Belov; David G Camp; Richard D Smith
Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.
Journal of proteome research 2008;7(8):3276-81.
2008: Vladislav A Petyuk; Wei-Jun Qian; Charlotte Hinault; Marina A Gritsenko; Mudita Singhal; Matthew Monroe; David G Camp; Rohit N Kulkarni; Richard D Smith
Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues.
Journal of proteome research 2008;7(8):3114-26.
2008: Ryan T Kelly; Jason S Page; Ioan Marginean; Keqi Tang; Richard D Smith
Nanoelectrospray emitter arrays providing interemitter electric field uniformity.
Analytical chemistry 2008;80(14):5660-5.
2008: Sarah M Sowell; Angela D Norbeck; Mary S Lipton; Carrie D Nicora; Stephen J Callister; Richard D Smith; Douglas F Barofsky; Stephen J Giovannoni
Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".
Applied and environmental microbiology 2008;74(13):4091-100.
2008: Ashoka D Polpitiya; Wei-Jun Qian; Navdeep Jaitly; Vladislav A Petyuk; Joshua N Adkins; David G Camp; Gordon A Anderson; Richard D Smith
DAnTE: a statistical tool for quantitative analysis of -omics data.
Bioinformatics (Oxford, England) 2008;24(13):1556-8.
2008: Nitin Gupta; Jamal Benhamida; Vipul Bhargava; Daniel Goodman; Elisabeth Kain; Ian Kerman; Ngan Nguyen; Noah Ollikainen; Jesse Rodriguez; Jian Wang; Mary S Lipton; Margaret Romine; Vineet Bafna; Richard D Smith; Pavel A Pevzner
Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes.
Genome research 2008;18(7):1133-42.
2008: Matthew Monroe; Jason L Shaw; Don S Daly; Joshua N Adkins; Richard D Smith
MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.
Computational biology and chemistry 2008;32(3):215-7.
2008: Bryan M Ham; Feng Yang; Hemalatha Jayachandran; Navdeep Jaitly; Matthew Monroe; Marina A Gritsenko; Eric A Livesay; Rui Zhao; Samuel O Purvine; Daniel Orton; Joshua N Adkins; David G Camp; Sandra Rossie; Richard D Smith
The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.
Journal of proteome research 2008;7(6):2215-21.
2008: Ryan T Kelly; Keqi Tang; daniel irimia; Mehmet Toner; Richard D Smith
Elastomeric microchip electrospray emitter for stable cone-jet mode operation in the nanoflow regime.
Analytical chemistry 2008;80(10):3824-31.
2008: Qibin Zhang; Ning Tang; Athena A Schepmoes; Lawrence S Phillips; Richard D Smith; Tom Metz
Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes.
Journal of proteome research 2008;7(5):2025-32.
2008: Brian H Clowers; Mikhail E Belov; David C Prior; William F Danielson; Yehia Ibrahim; Richard D Smith
Pseudorandom sequence modifications for ion mobility orthogonal time-of-flight mass spectrometry.
Analytical chemistry 2008;80(7):2464-73.
2008: Anoop M Mayampurath; Navdeep Jaitly; Samuel O Purvine; Matthew Monroe; Kenneth J Auberry; Joshua N Adkins; Richard D Smith
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.
Bioinformatics (Oxford, England) 2008;24(7):1021-3.
2008: Aleksey V Tolmachev; Errol W Robinson; Si Wu; Hyuk Kang; Natacha M Lourette; Ljiljana Pasa-Tolić; Richard D Smith
Trapped-ion cell with improved DC potential harmonicity for FT-ICR MS.
Journal of the American Society for Mass Spectrometry 2008;19(4):586-97.
2008: Joel G Pounds; Jason W Flora; Joshua N Adkins; K Monica Lee; Gaurav S J B Rana; Tapas Sengupta; Richard D Smith; willie mckinney
Characterization of the mouse bronchoalveolar lavage proteome by micro-capillary LC-FTICR mass spectrometry.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2008;864(1-2):95-101.
2008: Yufeng Shen; Nikola Tolić; Kim K Hixson; Samuel O Purvine; Ljiljana Pasa-Tolić; Wei-Jun Qian; Joshua N Adkins; Ronald J Moore; Richard D Smith
Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.
Analytical chemistry 2008;80(6):1871-82.
2008: Jason S Page; Keqi Tang; Ryan T Kelly; Richard D Smith
Subambient pressure ionization with nanoelectrospray source and interface for improved sensitivity in mass spectrometry.
Analytical chemistry 2008;80(5):1800-5.
2008: Erin Shammel Baker; Keqi Tang; William F Danielson; David C Prior; Richard D Smith
Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies.
Journal of the American Society for Mass Spectrometry 2008;19(3):411-9.
2008: Nathan P Manes; Ryan D Estep; Heather M Mottaz; Ronald J Moore; Therese R W Clauss; Matthew Monroe; Xiuxia Du; Joshua N Adkins; Scott W Wong; Richard D Smith
Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.
Journal of proteome research 2008;7(3):960-8.
2008: Olivier Pertz; Yingchun Wang; Feng Yang; Wei Wang; Laurie J Gay; Marina A Gristenko; Therese R Clauss; David J Anderson; Tao Liu; Kenneth J Auberry; David G Camp; Richard D Smith; Richard L Klemke
Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(6):1931-6.
2008: Mark Chin; Wei-Jun Qian; Haixing Wang; Vladislav A Petyuk; Joshua S Bloom; Daniel M Sforza; Goran Laćan; Dahai Liu; Arshad H Khan; Rita M Cantor; Diana J Bigelow; William P Melega; David G Camp; Richard D Smith; Desmond J Smith
Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease.
Journal of proteome research 2008;7(2):666-77.
2008: Brian H Clowers; Yehia M Ibrahim; David C Prior; William F Danielson; Mikhail E Belov; Richard D Smith
Enhanced ion utilization efficiency using an electrodynamic ion funnel trap as an injection mechanism for ion mobility spectrometry.
Analytical chemistry 2008;80(3):612-23.
2008: Charles Ansong; Hyunjin Yoon; Angela D Norbeck; Jean K Gustin; Jason E McDermott; Heather M Mottaz; Joanne Rue; Joshua N Adkins; Fred Heffron; Richard D Smith
Proteomics analysis of the causative agent of typhoid fever.
Journal of proteome research 2008;7(2):546-57.
2008: Vladislav A Petyuk; Navdeep Jaitly; Ronald J Moore; Jie Ding; Tom Metz; Keqi Tang; Matthew Monroe; Aleksey V Tolmachev; Joshua N Adkins; Mikhail E Belov; Alan R Dabney; Wei-Jun Qian; David G Camp; Richard D Smith
Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content.
Analytical chemistry 2008;80(3):693-706.
2008: Tom Metz; Wei-Jun Qian; Jon M Jacobs; Marina A Gritsenko; Ronald J Moore; Ashoka D Polpitiya; Matthew Monroe; David G Camp; Patricia W Mueller; Richard D Smith
Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.
Journal of proteome research 2008;7(2):698-707.
2008: Charles Ansong; Samuel O Purvine; Joshua N Adkins; Mary S Lipton; Richard D Smith
Proteogenomics: needs and roles to be filled by proteomics in genome annotation.
Briefings in functional genomics & proteomics 2008;7(1):50-62.
2008: Stephen J Callister; Lee Ann McCue; Joshua Turse; Matthew Monroe; Kenneth J Auberry; Richard D Smith; Joshua N Adkins; Mary S Lipton
Comparative bacterial proteomics: analysis of the core genome concept.
PloS one 2008;3(2):e1542.
2008: Jesse Rodriguez; Nitin Gupta; Richard D Smith; Pavel A Pevzner
Does trypsin cut before proline?
Journal of proteome research 2008;7(1):300-5.
2008: Ari M Frank; Nuno Bandeira; Zhouxin Shen; Stephen Tanner; Steven P Briggs; Richard D Smith; Pavel A Pevzner
Clustering millions of tandem mass spectra.
Journal of proteome research 2008;7(1):113-22.
2008: Eric A Livesay; Keqi Tang; Beverley K Taylor; Michael A Buschbach; Derek F Hopkins; Brian L LaMarche; Rui Zhao; Yufeng Shen; Daniel J Orton; Ronald J Moore; Ryan T Kelly; Harold R Udseth; Richard D Smith
Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses.
Analytical chemistry 2008;80(1):294-302.
2008: Ryan T Kelly; Jason S Page; Rui Zhao; Wei-Jun Qian; Heather M Mottaz; Keqi Tang; Richard D Smith
Capillary-based multi nanoelectrospray emitters: improvements in ion transmission efficiency and implementation with capillary reversed-phase LC-ESI-MS.
Analytical chemistry 2008;80(1):143-9.
2007: Feng Yang; David G Camp; Marina A Gritsenko; Quanzhou Luo; Ryan T Kelly; Therese R W Clauss; William R Brinkley; Richard D Smith; David L Stenoien
Identification of a novel mitotic phosphorylation motif associated with protein localization to the mitotic apparatus.
Journal of cell science 2007;120(Pt 22):4060-70.
2007: Feng Yang; Navdeep Jaitly; Hemalatha Jayachandran; Quanzhou Luo; Matthew Monroe; Xiuxia Du; Marina A Gritsenko; Rui Zhang; David J Anderson; Samuel O Purvine; Joshua N Adkins; Ronald J Moore; Heather M Mottaz; Shi-Jian Ding; Mary S Lipton; David G Camp; Harold R Udseth; Richard D Smith; Sandra Rossie
Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.
Journal of proteome research 2007;6(11):4489-97.
2007: Ioan Marginean; Ryan T Kelly; Jason S Page; Keqi Tang; Richard D Smith
Electrospray characteristic curves: in pursuit of improved performance in the nanoflow regime.
Analytical chemistry 2007;79(21):8030-6.
2007: Yehia Ibrahim; Mikhail E Belov; Aleksey V Tolmachev; David C Prior; Richard D Smith
Ion funnel trap interface for orthogonal time-of-flight mass spectrometry.
Analytical chemistry 2007;79(20):7845-52.
2007: Heather S Smallwood; Natacha M Lourette; Curt B Boschek; Diana J Bigelow; Richard D Smith; Ljiljana Pasa-Tolić; Thomas C Squier
Identification of a denitrase activity against calmodulin in activated macrophages using high-field liquid chromatography--FTICR mass spectrometry.
Biochemistry 2007;46(37):10498-505.
2007: Yingchun Wang; Shi-Jian Ding; Wei Wang; Feng Yang; Jon M Jacobs; David G Camp; Richard D Smith; Richard L Klemke
Methods for pseudopodia purification and proteomic analysis.
Science's STKE : signal transduction knowledge environment 2007;2007(400):pl4.
2007: Alexandre A Shvartsburg; Richard D Smith
Scaling of the resolving power and sensitivity for planar FAIMS and mobility-based discrimination in flow- and field-driven analyzers.
Journal of the American Society for Mass Spectrometry 2007;18(9):1672-81.
2007: Nitin Gupta; Stephen Tanner; Navdeep Jaitly; Joshua N Adkins; Mary Lipton; Robert Edwards; Margaret Romine; Andrei Osterman; Vineet Bafna; Richard D Smith; Pavel A Pevzner
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.
Genome research 2007;17(9):1362-77.
2007: Deborah L Diamond; Jon M Jacobs; Bryan Paeper; Sean C Proll; Marina A Gritsenko; Robert L Carithers; Anne M Larson; Matthew M Yeh; David G Camp; Richard D Smith; Michael G Katze
Proteomic profiling of human liver biopsies: hepatitis C virus-induced fibrosis and mitochondrial dysfunction.
Hepatology (Baltimore, Md.) 2007;46(3):649-57.
2007: Jason S Page; Ryan T Kelly; Keqi Tang; Richard D Smith
Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface.
Journal of the American Society for Mass Spectrometry 2007;18(9):1582-90.
2007: Mark Chin; Alex B Geng; Arshad H Khan; Wei-Jun Qian; Vladislav A Petyuk; Jyl Boline; Shawn Levy; Arthur W Toga; Richard D Smith; Richard M Leahy; Desmond J Smith
A genome-scale map of expression for a mouse brain section obtained using voxelation.
Physiological genomics 2007;30(3):313-21.
2007: Jie Ding; Christina M Sorensen; Qibin Zhang; Hongliang Jiang; Navdeep Jaitly; Eric A Livesay; Yufeng Shen; Richard D Smith; Tom Metz
Capillary LC coupled with high-mass measurement accuracy mass spectrometry for metabolic profiling.
Analytical chemistry 2007;79(16):6081-93.
2007: Tao Liu; Mikhail E Belov; Navdeep Jaitly; Wei-Jun Qian; Richard D Smith
Accurate mass measurements in proteomics.
Chemical reviews 2007;107(8):3621-53.
2007: Matthew Monroe; Nikola Tolić; Navdeep Jaitly; Jason L Shaw; Joshua N Adkins; Richard D Smith
VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Bioinformatics (Oxford, England) 2007;23(15):2021-3.
2007: Hyuk Kang; Ljiljana Pasa-Tolić; Richard D Smith
Targeted tandem mass spectrometry for high-throughput comparative proteomics employing NanoLC-FTICR MS with external ion dissociation.
Journal of the American Society for Mass Spectrometry 2007;18(7):1332-43.
2007: Erin Shammel Baker; Brian H Clowers; Fumin Li; Keqi Tang; Aleksey V Tolmachev; David C Prior; Mikhail E Belov; Richard D Smith
Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures.
Journal of the American Society for Mass Spectrometry 2007;18(7):1176-87.
2007: Eric Y Chan; Wei-Jun Qian; Deborah L Diamond; Tao Liu; Marina A Gritsenko; Matthew Monroe; David G Camp; Richard D Smith; Michael G Katze
Quantitative analysis of human immunodeficiency virus type 1-infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production.
Journal of virology 2007;81(14):7571-83.
2007: Qibin Zhang; Wei-Jun Qian; Tatyana V Knyushko; Therese R W Clauss; Samuel O Purvine; Ronald J Moore; Colette A Sacksteder; Mark Chin; Desmond J Smith; David G Camp; Diana J Bigelow; Richard D Smith
A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples.
Journal of proteome research 2007;6(6):2257-68.
2007: Qibin Zhang; Ning Tang; Jonathan W C Brock; Heather M Mottaz; Jennifer M Ames; John W Baynes; Richard D Smith; Tom Metz
Enrichment and analysis of nonenzymatically glycated peptides: boronate affinity chromatography coupled with electron-transfer dissociation mass spectrometry.
Journal of proteome research 2007;6(6):2323-30.
2007: Ryan T Kelly; Jason S Page; Keqi Tang; Richard D Smith
Array of chemically etched fused-silica emitters for improving the sensitivity and quantitation of electrospray ionization mass spectrometry.
Analytical chemistry 2007;79(11):4192-8.
2007: Yingchun Wang; Shi-Jian Ding; Wei Wang; Jon M Jacobs; Wei-Jun Qian; Ronald J Moore; Feng Yang; David G Camp; Richard D Smith; Richard L Klemke
Profiling signaling polarity in chemotactic cells.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(20):8328-33.
2007: Nathan P Manes; Jean K Gustin; Joanne Rue; Heather M Mottaz; Samuel O Purvine; Angela D Norbeck; Matthew Monroe; Jennifer S D Zimmer; Tom Metz; Joshua N Adkins; Richard D Smith; Fred Heffron
Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.
Molecular & cellular proteomics : MCP 2007;6(4):717-27.
2007: Mikhail E Belov; Michael A Buschbach; David C Prior; Keqi Tang; Richard D Smith
Multiplexed ion mobility spectrometry-orthogonal time-of-flight mass spectrometry.
Analytical chemistry 2007;79(6):2451-62.
2007: Alexandre A Shvartsburg; Stefan V Mashkevich; Erin Shammel Baker; Richard D Smith
Optimization of algorithms for ion mobility calculations.
The journal of physical chemistry. A 2007;111(10):2002-10.
2007: Vladislav A Petyuk; Wei-Jun Qian; Mark Chin; Haixing Wang; Eric A Livesay; Matthew Monroe; Joshua N Adkins; Navdeep Jaitly; David J Anderson; David G Camp; Desmond J Smith; Richard D Smith
Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.
Genome research 2007;17(3):328-36.
2007: Alexandre A Shvartsburg; Fumin Li; Keqi Tang; Richard D Smith
Distortion of ion structures by field asymmetric waveform ion mobility spectrometry.
Analytical chemistry 2007;79(4):1523-8.
2007: Shi-Jian Ding; Wei-Jun Qian; Richard D Smith
Quantitative proteomic approaches for studying phosphotyrosine signaling.
Expert review of proteomics 2007;4(1):13-23.
2007: Seema Sharma; David C Simpson; Nikola Tolić; Navdeep Jaitly; Anoop M Mayampurath; Richard D Smith; Ljiljana Pasa-Tolić
Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry.
Journal of proteome research 2007;6(2):602-10.
2007: Quanzhou Luo; Jason S Page; Keqi Tang; Richard D Smith
MicroSPE-nanoLC-ESI-MS/MS using 10-microm-i.d. silica-based monolithic columns for proteomics.
Analytical chemistry 2007;79(2):540-5.
2007: Tao Liu; Wei-Jun Qian; David G Camp; Richard D Smith
The use of a quantitative cysteinyl-peptide enrichment technology for high-throughput quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) 2007;359():107-24.
2007: Qibin Zhang; Andrej Frolov; Ning Tang; Ralf Hoffmann; Tom van de Goor; Tom Metz; Richard D Smith
Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides.
Rapid communications in mass spectrometry : RCM 2007;21(5):661-6.
2006: Aleksey V Tolmachev; Matthew Monroe; Navdeep Jaitly; Vladislav A Petyuk; Joshua N Adkins; Richard D Smith
Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration.
Analytical chemistry 2006;78(24):8374-85.
2006: Tom Metz; Jon M Jacobs; Marina A Gritsenko; Ghislaine Fontès; Wei-Jun Qian; David G Camp; Vincent Poitout; Richard D Smith
Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS.
Journal of proteome research 2006;5(12):3345-54.
2006: Angela D Norbeck; Stephen J Callister; Matthew Monroe; Navdeep Jaitly; Dwayne A Elias; Mary S Lipton; Richard D Smith
Proteomic approaches to bacterial differentiation.
Journal of microbiological methods 2006;67(3):473-86.
2006: Stephen J Callister; Carrie D Nicora; Xiaohua Zeng; Jung Hyeob Roh; Miguel A Dominguez; Christine L Tavano; Matthew Monroe; samuel kaplan; Timothy J Donohue; Richard D Smith; Mary S Lipton
Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.
Journal of microbiological methods 2006;67(3):424-36.
2006: Ryan T Kelly; Jason S Page; Quanzhou Luo; Ronald J Moore; Daniel J Orton; Keqi Tang; Richard D Smith
Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry.
Analytical chemistry 2006;78(22):7796-801.
2006: Alexandre A Shvartsburg; Tadeusz Bryskiewicz; Randy W Purves; Keqi Tang; Roger Guevremont; Richard D Smith
Field asymmetric waveform ion mobility spectrometry studies of proteins: Dipole alignment in ion mobility spectrometry?
The journal of physical chemistry. B 2006;110(43):21966-80.
2006: Kim K Hixson; Joshua N Adkins; Scott E Baker; Ronald J Moore; Brett Chromy; Richard D Smith; Sandra L McCutchen-Maloney; Mary S Lipton
Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.
Journal of proteome research 2006;5(11):3008-17.
2006: Navdeep Jaitly; Matthew Monroe; Vladislav A Petyuk; Therese R W Clauss; Joshua N Adkins; Richard D Smith
Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline.
Analytical chemistry 2006;78(21):7397-409.
2006: Tracey Baas; Carole R Baskin; Deborah L Diamond; Adolfo García-Sastre; Helle Bielefeldt-Ohmann; Terrence M Tumpey; Matthew J Thomas; Victoria S Carter; Thomas H Teal; Neal Van Hoeven; Sean C Proll; Jon M Jacobs; Z R Caldwell; Marina A Gritsenko; Renee R Hukkanen; David G Camp; Richard D Smith; Michael G Katze
Integrated molecular signature of disease: analysis of influenza virus-infected macaques through functional genomics and proteomics.
Journal of virology 2006;80(21):10813-28.
2006: Tao Liu; Wei-Jun Qian; Heather M Mottaz; Marina A Gritsenko; Angela D Norbeck; Ronald J Moore; Samuel O Purvine; David G Camp; Richard D Smith
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.
Molecular & cellular proteomics : MCP 2006;5(11):2167-74.
2006: Wei-Jun Qian; Jon M Jacobs; Tao Liu; David G Camp; Richard D Smith
Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications.
Molecular & cellular proteomics : MCP 2006;5(10):1727-44.
2006: Tao Liu; Wei-Jun Qian; Marina A Gritsenko; wenzhong xiao; Lyle L Moldawer; Amit Kaushal; Matthew Monroe; Susan M Varnum; Ronald J Moore; Samuel O Purvine; Ronald V Maier; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
High dynamic range characterization of the trauma patient plasma proteome.
Molecular & cellular proteomics : MCP 2006;5(10):1899-913.
2006: Liang Shi; Joshua N Adkins; James R Coleman; Athena A Schepmoes; Alice Dohnkova; Heather M Mottaz; Angela D Norbeck; Samuel O Purvine; Nathan P Manes; Heather S Smallwood; Haixing Wang; John Forbes; Philippe Gros; Sergio Uzzau; Karin D Rodland; Fred Heffron; Richard D Smith; Thomas C Squier
Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages.
The Journal of biological chemistry 2006;281(39):29131-40.
2006: Yehia Ibrahim; Keqi Tang; Aleksey V Tolmachev; Alexandre A Shvartsburg; Richard D Smith
Improving mass spectrometer sensitivity using a high-pressure electrodynamic ion funnel interface.
Journal of the American Society for Mass Spectrometry 2006;17(9):1299-305.
2006: Richard D Smith
Future directions for electrospray ionization for biological analysis using mass spectrometry.
BioTechniques 2006;41(2):147-8.
2006: Stephen J Callister; Miguel A Dominguez; Carrie D Nicora; Xiaohua Zeng; Christine L Tavano; samuel kaplan; Timothy J Donohue; Richard D Smith; Mary S Lipton
Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures.
Journal of proteome research 2006;5(8):1940-7.
2006: Deborah L Diamond; Sean C Proll; Jon M Jacobs; Eric Y Chan; David G Camp; Richard D Smith; Michael G Katze
HepatoProteomics: applying proteomic technologies to the study of liver function and disease.
Hepatology (Baltimore, Md.) 2006;44(2):299-308.
2006: Joshua N Adkins; Heather M Mottaz; Angela D Norbeck; Jean K Gustin; Joanne Rue; Therese R W Clauss; Samuel O Purvine; Karin D Rodland; Fred Heffron; Richard D Smith
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions.
Molecular & cellular proteomics : MCP 2006;5(8):1450-61.
2006: Dwayne A Elias; Matthew Monroe; Richard D Smith; James K Fredrickson; Mary S Lipton
Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1.
Journal of microbiological methods 2006;66(2):223-33.
2006: Konstantinos Petritis; Lars J Kangas; Bo Yan; Matthew Monroe; Eric F Strittmatter; Wei-Jun Qian; Joshua N Adkins; Ronald J Moore; Ying Xu; Mary S Lipton; David G Camp; Richard D Smith
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.
Analytical chemistry 2006;78(14):5026-39.
2006: Colette A Sacksteder; Wei-Jun Qian; Tatyana V Knyushko; Haixing Wang; Mark Chin; Goran Lacan; William P Melega; David G Camp; Richard D Smith; Desmond J Smith; Thomas C Squier; Diana J Bigelow
Endogenously nitrated proteins in mouse brain: links to neurodegenerative disease.
Biochemistry 2006;45(26):8009-22.
2006: Yan-Huai R Ding; Kim K Hixson; Carol S Giometti; Ann Stanley; Abraham Esteve-Núñez; Tripti Khare; Sandra L Tollaksen; Wenhong Zhu; Joshua N Adkins; Mary S Lipton; Richard D Smith; Tünde Mester; Derek R Lovley
The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.
Biochimica et biophysica acta 2006;1764(7):1198-206.
2006: David C Simpson; Seonghee Ahn; Ljiljana Pasa-Tolic; Bogdan Bogdanov; Heather M Mottaz; Andrey N Vilkov; Gordon A Anderson; Mary S Lipton; Richard D Smith
Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling.
Electrophoresis 2006;27(13):2722-33.
2006: Alexandre A Shvartsburg; Fumin Li; Keqi Tang; Richard D Smith
High-resolution field asymmetric waveform ion mobility spectrometry using new planar geometry analyzers.
Analytical chemistry 2006;78(11):3706-14.
2006: Alexandre A Shvartsburg; Fumin Li; Keqi Tang; Richard D Smith
Characterizing the structures and folding of free proteins using 2-D gas-phase separations: observation of multiple unfolded conformers.
Analytical chemistry 2006;78(10):3304-15.
2006: Richard D Smith; Keqi Tang; Yufeng Shen
Ultra-sensitive and quantitative characterization of proteomes.
Molecular bioSystems 2006;2(5):221-30.
2006: Feng Yang; David L Stenoien; Eric F Strittmatter; Junhua Wang; Lianghao Ding; Mary S Lipton; Matthew Monroe; Carrie D Nicora; Marina A Gristenko; Keqi Tang; Ruihua Fang; Joshua N Adkins; David G Camp; David J Chen; Richard D Smith
Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.
Journal of proteome research 2006;5(5):1252-60.
2006: Quanzhou Luo; Keqi Tang; Feng Yang; Ayesha Elias; Yufeng Shen; Ronald J Moore; Rui Zhao; Kim K Hixson; Sandra Rossie; Richard D Smith
More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry.
Journal of proteome research 2006;5(5):1091-7.
2006: Jennifer S D Zimmer; Matthew Monroe; Wei-Jun Qian; Richard D Smith
Advances in proteomics data analysis and display using an accurate mass and time tag approach.
Mass spectrometry reviews 2006;25(3):450-82.
2006: Jason S Page; Aleksey V Tolmachev; Keqi Tang; Richard D Smith
Theoretical and experimental evaluation of the low m/z transmission of an electrodynamic ion funnel.
Journal of the American Society for Mass Spectrometry 2006;17(4):586-92.
2006: Ruihua Fang; Dwayne A Elias; Matthew Monroe; Yufeng Shen; Martin McIntosh; Pei Wang; Carrie D Goddard; Stephen J Callister; Ronald J Moore; Yuri A Gorby; Joshua N Adkins; James K Fredrickson; Mary S Lipton; Richard D Smith
Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach.
Molecular & cellular proteomics : MCP 2006;5(4):714-25.
2006: Alexandre A Shvartsburg; Stefan V Mashkevich; Richard D Smith
Feasibility of higher-order differential ion mobility separations using new asymmetric waveforms.
The journal of physical chemistry. A 2006;110(8):2663-73.
2006: Gary R Kiebel; Kenneth J Auberry; Navdeep Jaitly; David A Clark; Matthew Monroe; Elena S Peterson; Nikola Tolić; Gordon A Anderson; Richard D Smith
PRISM: a data management system for high-throughput proteomics.
Proteomics 2006;6(6):1783-90.
2006: Haixing Wang; Wei-Jun Qian; Mark Chin; Vladislav A Petyuk; Richard C Barry; Tao Liu; Marina A Gritsenko; Heather M Mottaz; Ronald J Moore; David G Camp Ii; Arshad H Khan; Desmond J Smith; Richard D Smith
Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment.
Journal of proteome research 2006;5(2):361-9.
2006: Stephen J Callister; Richard C Barry; Joshua N Adkins; Ethan T Johnson; Wei-Jun Qian; Bobbie-Jo M Webb-Robertson; Richard D Smith; Mary S Lipton
Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics.
Journal of proteome research 2006;5(2):277-86.
2006: Mary S Lipton; Margaret F Romine; Matthew Monroe; Dwayne A Elias; Ljiljana Pasa-Tolic; Gordon A Anderson; David J Anderson; James K Fredrickson; Kim K Hixson; Christophe Masselon; Heather M Mottaz; Nikola Tolic; Richard D Smith
AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.
Methods of biochemical analysis 2006;49():113-34.
2005: Yufeng Shen; Eric F Strittmatter; Rui Zhang; Tom Metz; Ronald J Moore; Fumin Li; Harold R Udseth; Richard D Smith; Klaus K Unger; Dipika Kumar; Dieter Lubda
Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements.
Analytical chemistry 2005;77(23):7763-73.
2005: Haixing Wang; Wei-Jun Qian; Heather M Mottaz; Therese R W Clauss; David J Anderson; Ronald J Moore; David G Camp; Arshad H Khan; Daniel M Sforza; Maria G Pallavicini; Desmond J Smith; Richard D Smith
Development and evaluation of a micro- and nanoscale proteomic sample preparation method.
Journal of proteome research 2005;4(6):2397-403.
2005: Tao Liu; Wei-Jun Qian; Marina A Gritsenko; David G Camp; Matthew Monroe; Ronald J Moore; Richard D Smith
Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.
Journal of proteome research 2005;4(6):2070-80.
2005: Yufeng Shen; Richard D Smith; Klaus K Unger; Dipika Kumar; Dieter Lubda
Ultrahigh-throughput proteomics using fast RPLC separations with ESI-MS/MS.
Analytical chemistry 2005;77(20):6692-701.
2005: Keqi Tang; Fumin Li; Alexandre A Shvartsburg; Eric F Strittmatter; Richard D Smith
Two-dimensional gas-phase separations coupled to mass spectrometry for analysis of complex mixtures.
Analytical chemistry 2005;77(19):6381-8.
2005: Yufeng Shen; Jeongkwon Kim; Eric F Strittmatter; Jon M Jacobs; David G Camp; Ruihua Fang; Nikola Tolié; Ronald J Moore; Richard D Smith
Characterization of the human blood plasma proteome.
Proteomics 2005;5(15):4034-45.
2005: Jason S Page; Aleksey V Tolmachev; Keqi Tang; Richard D Smith
Variable low-mass filtering using an electrodynamic ion funnel.
Journal of mass spectrometry : JMS 2005;40(9):1215-22.
2005: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
FAIMS operation for realistic gas flow profile and asymmetric waveforms including electronic noise and ripple.
Journal of the American Society for Mass Spectrometry 2005;16(9):1447-55.
2005: Quanzhou Luo; Yufeng Shen; Kim K Hixson; Rui Zhao; Feng Yang; Ronald J Moore; Heather M Mottaz; Richard D Smith
Preparation of 20-microm-i.d. silica-based monolithic columns and their performance for proteomics analyses.
Analytical chemistry 2005;77(15):5028-35.
2005: Joshua N Adkins; Matthew Monroe; Kenneth J Auberry; Yufeng Shen; Jon M Jacobs; David G Camp; Frank Vitzthum; Karin D Rodland; Richard C Zangar; Richard D Smith; Joel G Pounds
A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy.
Proteomics 2005;5(13):3454-66.
2005: Dwayne A Elias; Matthew Monroe; Matthew J Marshall; Margaret F Romine; Alexander S Belieav; James K Fredrickson; Gordon A Anderson; Richard D Smith; Mary S Lipton
Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics.
Proteomics 2005;5(12):3120-30.
2005: Angela D Norbeck; Matthew Monroe; Joshua N Adkins; Kevin K Anderson; Don S Daly; Richard D Smith
The utility of accurate mass and LC elution time information in the analysis of complex proteomes.
Journal of the American Society for Mass Spectrometry 2005;16(8):1239-49.
2005: Jon M Jacobs; Joshua N Adkins; Wei-Jun Qian; Tao Liu; Yufeng Shen; David G Camp; Richard D Smith
Utilizing human blood plasma for proteomic biomarker discovery.
Journal of proteome research 2005;4(4):1073-85.
2005: Jon M Jacobs; Deborah L Diamond; Eric Y Chan; Marina A Gritsenko; Weijun Qian; Miroslava Stastna; Tracey Baas; David G Camp; Robert L Carithers; Richard D Smith; Michael G Katze
Proteome analysis of liver cells expressing a full-length hepatitis C virus (HCV) replicon and biopsy specimens of posttransplantation liver from HCV-infected patients.
Journal of virology 2005;79(12):7558-69.
2005: Keqi Tang; Alexandre A Shvartsburg; Hak-No Lee; David C Prior; Michael A Buschbach; Fumin Li; Aleksey V Tolmachev; Gordon A Anderson; Richard D Smith
High-sensitivity ion mobility spectrometry/mass spectrometry using electrodynamic ion funnel interfaces.
Analytical chemistry 2005;77(10):3330-9.
2005: Yufeng Shen; Rui Zhang; Ronald J Moore; Jeongkwon Kim; Tom Metz; Kim K Hixson; Rui Zhao; Eric A Livesay; Harold R Udseth; Richard D Smith
Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.
Analytical chemistry 2005;77(10):3090-100.
2005: Feng Yang; Bogdan Bogdanov; Eric F Strittmatter; Andrey N Vilkov; Marina A Gritsenko; Liang Shi; Dwayne A Elias; Shuisong Ni; Margaret F Romine; Ljiljana Pasa-Tolić; Mary S Lipton; Richard D Smith
Characterization of purified c-type heme-containing peptides and identification of c-type heme-attachment sites in Shewanella oneidenis cytochromes using mass spectrometry.
Journal of proteome research 2005;4(3):846-54.
2005: Wei-Jun Qian; Matthew Monroe; Tao Liu; Jon M Jacobs; Gordon A Anderson; Yufeng Shen; Ronald J Moore; David J Anderson; Rui Zhang; Steve E Calvano; Stephen F Lowry; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.
Molecular & cellular proteomics : MCP 2005;4(5):700-9.
2005: Jon M Jacobs; Xiaohua Yang; Benjamin J Luft; John J Dunn; David G Camp; Richard D Smith
Proteomic analysis of Lyme disease: global protein comparison of three strains of Borrelia burgdorferi.
Proteomics 2005;5(5):1446-53.
2005: David C Simpson; Richard D Smith
Combining capillary electrophoresis with mass spectrometry for applications in proteomics.
Electrophoresis 2005;26(7-8):1291-305.
2005: Tao Liu; Wei-Jun Qian; Wan-Nan U Chen; Jon M Jacobs; Ronald J Moore; David J Anderson; Marina A Gritsenko; Matthew Monroe; Brian D Thrall; David G Camp; Richard D Smith
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome.
Proteomics 2005;5(5):1263-73.
2005: Bogdan Bogdanov; Richard D Smith
Proteomics by FTICR mass spectrometry: top down and bottom up.
Mass spectrometry reviews 2005;24(2):168-200.
2005: Jason S Page; Bogdan Bogdanov; Andrey N Vilkov; David C Prior; Michael A Buschbach; Keqi Tang; Richard D Smith
Automatic gain control in mass spectrometry using a jet disrupter electrode in an electrodynamic ion funnel.
Journal of the American Society for Mass Spectrometry 2005;16(2):244-53.
2005: Wei-Jun Qian; Jon M Jacobs; David G Camp; Matthew Monroe; Ronald J Moore; Marina A Gritsenko; Steve E Calvano; Stephen F Lowry; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; Richard D Smith
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Proteomics 2005;5(2):572-84.
2005: Christophe Masselon; Ljiljana Pasa-Tolić; Nikola Tolić; Gordon A Anderson; Bogdan Bogdanov; Andrey N Vilkov; Yufeng Shen; Rui Zhao; Wei-Jun Qian; Mary S Lipton; David G Camp; Richard D Smith
Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry.
Analytical chemistry 2005;77(2):400-6.
2005: Wei-Jun Qian; Tao Liu; Matthew Monroe; Eric F Strittmatter; Jon M Jacobs; Lars J Kangas; Konstantinos Petritis; David G Camp; Richard D Smith
Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome.
Journal of proteome research 2005;4(1):53-62.
2005: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Optimization of the design and operation of FAIMS analyzers.
Journal of the American Society for Mass Spectrometry 2005;16(1):2-12.
2004: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Understanding and designing field asymmetric waveform ion mobility spectrometry separations in gas mixtures.
Analytical chemistry 2004;76(24):7366-74.
2004: Aleksey V Tolmachev; Andrey N Vilkov; Bogdan Bogdanov; Ljiljana Pasa-Tolić; Christophe Masselon; Richard D Smith
Collisional activation of ions in RF ion traps and ion guides: the effective ion temperature treatment.
Journal of the American Society for Mass Spectrometry 2004;15(11):1616-28.
2004: Ljiljana Pasa-Tolić; Christophe Masselon; Richard C Barry; Yufeng Shen; Richard D Smith
Proteomic analyses using an accurate mass and time tag strategy.
BioTechniques 2004;37(4):621-4, 626-33, 636 passim.
2004: Alexandre A Shvartsburg; Keqi Tang; Richard D Smith
Modeling the resolution and sensitivity of FAIMS analyses.
Journal of the American Society for Mass Spectrometry 2004;15(10):1487-98.
2004: Keqi Tang; Jason S Page; Richard D Smith
Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry.
Journal of the American Society for Mass Spectrometry 2004;15(10):1416-23.
2004: Susan M Varnum; Daniel N Streblow; Matthew Monroe; Patricia Smith; Kenneth J Auberry; Ljiljana Pasa-Tolic; Dai Wang; David G Camp; Karin Rodland; Steven Wiley; William J Britt; Thomas Shenk; Richard D Smith; Jay A Nelson
Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome.
Journal of virology 2004;78(20):10960-6.
2004: Tao Liu; Wei-Jun Qian; Eric F Strittmatter; David G Camp; Gordon A Anderson; Brian D Thrall; Richard D Smith
High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology.
Analytical chemistry 2004;76(18):5345-53.
2004: Eric F Strittmatter; Lars J Kangas; Konstantinos Petritis; Heather M Mottaz; Gordon A Anderson; Yufeng Shen; Jon M Jacobs; David G Camp; Richard D Smith
Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry.
Journal of proteome research 2004;3(4):760-9.
2004: Wei-Jun Qian; David G Camp; Richard D Smith
High-throughput proteomics using Fourier transform ion cyclotron resonance mass spectrometry.
Expert review of proteomics 2004;1(1):87-95.
2004: Holger Prokisch; Curt Scharfe; David G Camp; wenzhong xiao; Lior David; Christophe Andreoli; Matthew Monroe; Ronald J Moore; Marina A Gritsenko; Christian Kozany; Kim K Hixson; Heather M Mottaz; Hans Zischka; Marius Ueffing; Zelek S Herman; Ronald W Davis; Thomas Meitinger; Peter J Oefner; Richard D Smith; Lars M Steinmetz
Integrative analysis of the mitochondrial proteome in yeast.
PLoS biology 2004;2(6):e160.
2004: Josip Blonder; Michael B Goshe; wenzhong xiao; David G Camp; Mark Wingerd; Ronald W Davis; Richard D Smith
Global analysis of the membrane subproteome of Pseudomonas aeruginosa using liquid chromatography-tandem mass spectrometry.
Journal of proteome research 2004;3(3):434-44.
2004: Richard D Smith; Yufeng Shen; Keqi Tang
Ultrasensitive and quantitative analyses from combined separations-mass spectrometry for the characterization of proteomes.
Accounts of chemical research 2004;37(4):269-78.
2004: Yufeng Shen; Jon M Jacobs; David G Camp; Ruihua Fang; Ronald J Moore; Richard D Smith; wenzhong xiao; Ronald W Davis; Ronald G Tompkins
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
Analytical chemistry 2004;76(4):1134-44.
2004: Jason S Page; Christophe Masselon; Richard D Smith
FTICR mass spectrometry for qualitative and quantitative bioanalyses.
Current opinion in biotechnology 2004;15(1):3-11.
2004: Mikhail E Belov; Gordon A Anderson; Mark A Wingerd; Harold R Udseth; Keqi Tang; David C Prior; Kenneth R Swanson; Michael A Buschbach; Eric F Strittmatter; Ronald J Moore; Richard D Smith
An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics.
Journal of the American Society for Mass Spectrometry 2004;15(2):212-32.
2004: Yufeng Shen; N Tolić; Christophe Masselon; L Pasa-Tolić; David G Camp; Mary S Lipton; Gordon A Anderson; Richard D Smith
Nanoscale proteomics.
Analytical and bioanalytical chemistry 2004;378(4):1037-45.
2004: Margaret F Romine; Dwayne A Elias; Matthew Monroe; Kenneth J Auberry; Ruihua Fang; James K Fredrickson; Gordon A Anderson; Richard D Smith; Mary S Lipton
Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis.
Omics : a journal of integrative biology 2004;8(3):239-54.
2004: Richard C Zangar; Susan M Varnum; Chandice Covington; Richard D Smith
A rational approach for discovering and validating cancer markers in very small samples using mass spectrometry and ELISA microarrays.
Disease markers 2004;20(3):135-48.
2004: Andrey N Vilkov; Bogdan Bogdanov; Ljiljana Pasa-Tolić; David C Prior; Gordon A Anderson; Christophe Masselon; Ronald J Moore; Richard D Smith
Tailored noise waveform/collision-induced dissociation of ions stored in a linear ion trap combined with liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2004;18(22):2682-90.
2004: Suzana Martinović; Ljiljana Pasa-Tolić; Richard D Smith
Capillary isoelectric focusing--mass spectrometry of proteins and protein complexes.
Methods in molecular biology (Clifton, N.J.) 2004;276():291-304.
2004: Jon M Jacobs; Heather M Mottaz; Li-Rong Yu; David J Anderson; Ronald J Moore; Wan-Nan U Chen; Kenneth J Auberry; Eric F Strittmatter; Matthew Monroe; Brian D Thrall; David G Camp; Richard D Smith
Multidimensional proteome analysis of human mammary epithelial cells.
Journal of proteome research 2004;3(1):68-75.
2004: Yufeng Shen; Nikola Tolić; Christophe Masselon; Ljiljana Pasa-Tolić; David G Camp; Kim K Hixson; Rui Zhao; Gordon A Anderson; Richard D Smith
Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS.
Analytical chemistry 2004;76(1):144-54.
2003: Aleksey V Tolmachev; Andrey N Vilkov; Ljiljana Pasa-Tolic; Harold R Udseth; Richard D Smith
Suppression of the lower charge state ions in the external accumulation RF multipole with a reduced trapping DC potential.
Journal of the American Society for Mass Spectrometry 2003;14(11):1229-35.
2003: Wei-Jun Qian; Michael B Goshe; David G Camp; Li-Rong Yu; Keqi Tang; Richard D Smith
Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures.
Analytical chemistry 2003;75(20):5441-50.
2003: Deepa Mohan; Ljiljana Pasa-Tolić; Christophe Masselon; Nikola Tolić; Bogdan Bogdanov; Kim K Hixson; Richard D Smith; Cheng S. Lee
Integration of electrokinetic-based multidimensional separation/concentration platform with electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry for proteome analysis of Shewanella oneidensis.
Analytical chemistry 2003;75(17):4432-40.
2003: Eric F Strittmatter; Lee Ferguson; Keqi Tang; Richard D Smith
Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry.
Journal of the American Society for Mass Spectrometry 2003;14(9):980-91.
2003: Mikhail E Belov; Rui Zhang; Eric F Strittmatter; David C Prior; Keqi Tang; Richard D Smith
Automated gain control and internal calibration with external ion accumulation capillary liquid chromatography-electrospray ionization Fourier transform ion cyclotron resonance.
Analytical chemistry 2003;75(16):4195-205.
2003: Wan-Nan U Chen; Li-Rong Yu; Eric F Strittmatter; Brian D Thrall; David G Camp; Richard D Smith
Detection of in situ labeled cell surface proteins by mass spectrometry: application to the membrane subproteome of human mammary epithelial cells.
Proteomics 2003;3(8):1647-51.
2003: Yufeng Shen; Ronald J Moore; Rui Zhao; Josip Blonder; Deanna L Auberry; Christophe Masselon; Ljiljana Pasa-Tolić; Kim K Hixson; Kenneth J Auberry; Richard D Smith
High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.
Analytical chemistry 2003;75(14):3596-3605.
2003: Susan M Varnum; Chandice C Covington; Ronald L Woodbury; Konstantinos Petritis; Lars J Kangas; Mohamed S Abdullah; Joel G Pounds; Richard D Smith; Richard C Zangar
Proteomic characterization of nipple aspirate fluid: identification of potential biomarkers of breast cancer.
Breast cancer research and treatment 2003;80(1):87-97.
2003: Michael B Goshe; Josip Blonder; Richard D Smith
Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis.
Journal of proteome research 2003;2(2):153-61.
2003: Konstantinos Petritis; Lars J Kangas; Lee Ferguson; Gordon A Anderson; Ljiljana Pasa-Tolić; Mary S Lipton; Kenneth J Auberry; Eric F Strittmatter; Yufeng Shen; Rui Zhao; Richard D Smith
Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses.
Analytical chemistry 2003;75(5):1039-48.
2003: Eric F Strittmatter; Nestor Rodriguez; Richard D Smith
High mass measurement accuracy determination for proteomics using multivariate regression fitting: application to electrospray ionization time-of-flight mass spectrometry.
Analytical chemistry 2003;75(3):460-8.
2003: Michael B Goshe; Richard D Smith
Stable isotope-coded proteomic mass spectrometry.
Current opinion in biotechnology 2003;14(1):101-9.
2003: Richard D Smith; Gordon A Anderson; Mary S Lipton; Christophe Masselon; Ljiljana Pasa-Tolic; Harold R Udseth; Mikhail E Belov; Yufeng Shen; Timothy D Veenstra
High-performance separations and mass spectrometric methods for high-throughput proteomics using accurate mass tags.
Advances in protein chemistry 2003;65():85-131.
2003: Mikhail E Belov; Vsevolod S Rakov; Evgueni Nikolaev; Michael B Goshe; Gordon A Anderson; Richard D Smith
Initial implementation of external accumulation liquid chromatography/electrospray ionization Fourier transform ion cyclotron resonance with automated gain control.
Rapid communications in mass spectrometry : RCM 2003;17(7):627-36.
2003: Lee Ferguson; Richard D Smith
Proteome analysis by mass spectrometry.
Annual review of biophysics and biomolecular structure 2003;32():399-424.
2002: Joshua N Adkins; Susan M Varnum; Kenneth J Auberry; Ronald J Moore; Nicolas H Angell; Richard D Smith; David L Springer; Joel G Pounds
Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry.
Molecular & cellular proteomics : MCP 2002;1(12):947-55.
2002: Ljiljana Pasa-Tolić; Mary S Lipton; Christophe Masselon; Gordon A Anderson; Yufeng Shen; Nikola Tolić; Richard D Smith
Gene expression profiling using advanced mass spectrometric approaches.
Journal of mass spectrometry : JMS 2002;37(12):1185-98.
2002: Keqi Tang; Aleksey V Tolmachev; Evgueni Nikolaev; Rui Zhang; Mikhail E Belov; Harold R Udseth; Richard D Smith
Independent control of ion transmission in a jet disrupter dual-channel ion funnel electrospray ionization MS interface.
Analytical chemistry 2002;74(20):5431-7.
2002: Theresa A Ramelot; John R Cort; Adelinda A Yee; Furong Liu; Michael B Goshe; Aled M Edwards; Richard D Smith; Cheryl H Arrowsmith; Thomas E Dever; Michael A Kennedy
Myxoma virus immunomodulatory protein M156R is a structural mimic of eukaryotic translation initiation factor eIF2alpha.
Journal of molecular biology 2002;322(5):943-54.
2002: Scott J Berger; Sang-Won Lee; Gordon A Anderson; Lijana Pasa-Tolić; Nikola Tolić; Yufeng Shen; Rui Zhao; Richard D Smith
High-throughput global peptide proteomic analysis by combining stable isotope amino acid labeling and data-dependent multiplexed-MS/MS.
Analytical chemistry 2002;74(19):4994-5000.
2002: Kim K Hixson; Nestor Rodriguez; David G Camp; Eric F Strittmatter; Mary S Lipton; Richard D Smith
Evaluation of enzymatic digestion and liquid chromatography-mass spectrometry peptide mapping of the integral membrane protein bacteriorhodopsin.
Electrophoresis 2002;23(18):3224-32.
2002: Jinzhi Chen; Cheng S. Lee; Yufeng Shen; Richard D Smith; Eric H Baehrecke
Integration of capillary isoelectric focusing with capillary reversed-phase liquid chromatography for two-dimensional proteomics separation.
Electrophoresis 2002;23(18):3143-8.
2002: Yufeng Shen; Richard D Smith
Proteomics based on high-efficiency capillary separations.
Electrophoresis 2002;23(18):3106-24.
2002: Mary S Lipton; Ljiljana Pasa-Tolic'; Gordon A Anderson; David J Anderson; Deanna L Auberry; John R Battista; Michael J Daly; James K Fredrickson; Kim K Hixson; Heather M Kostandarithes; Christophe Masselon; Lye Meng Markillie; Ronald J Moore; Margaret F Romine; Yufeng Shen; Eric Stritmatter; Nikola Tolic'; Harold R Udseth; Amudhan Venkateswaran; Kwong-Kwok Wong; Rui Zhao; Richard D Smith
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11049-54.
2002: Yufeng Shen; Rui Zhao; Scott J Berger; Gordon A Anderson; Nestor Rodriguez; Richard D Smith
High-efficiency nanoscale liquid chromatography coupled on-line with mass spectrometry using nanoelectrospray ionization for proteomics.
Analytical chemistry 2002;74(16):4235-49.
2002: Ljiljana Pasa-Tolić; Richard Harkewicz; Gordon A Anderson; Nikola Tolić; Yufeng Shen; Rui Zhao; Brian D Thrall; Christophe Masselon; Richard D Smith
Increased proteome coverage for quantitative peptide abundance measurements based upon high performance separations and DREAMS FTICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2002;13(8):954-63.
2002: Josip Blonder; Michael B Goshe; Ronald J Moore; Ljiljana Pasa-Tolic; Christophe Masselon; Mary S Lipton; Richard D Smith
Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry.
Journal of proteome research 2002;1(4):351-60.
2002: Li-Rong Yu; Mark D Johnson; Thomas P Conrads; Richard D Smith; Richard S Morrison; Timothy D Veenstra
Proteome analysis of camptothecin-treated cortical neurons using isotope-coded affinity tags.
Electrophoresis 2002;23(11):1591-8.
2002: Oleg V Borisov; Michael B Goshe; Thomas P Conrads; V Sergey Rakov; Timothy D Veenstra; Richard D Smith
Low-energy collision-induced dissociation fragmentation analysis of cysteinyl-modified peptides.
Analytical chemistry 2002;74(10):2284-92.
2002: Richard D Smith; Gordon A Anderson; Mary S Lipton; Ljiljana Pasa-Tolic; Yufeng Shen; Thomas P Conrads; Timothy D Veenstra; Harold R Udseth
An accurate mass tag strategy for quantitative and high-throughput proteome measurements.
Proteomics 2002;2(5):513-23.
2002: Sang-Won Lee; Scott J Berger; Suzana Martinović; Ljiljana Pasa-Tolić; Gordon A Anderson; Yufeng Shen; Rui Zhao; Richard D Smith
Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):5942-7.
2002: Aleksey V Tolmachev; Christophe Masselon; Gordon A Anderson; Harold R Udseth; Richard D Smith
Frequency shifts due to the interference of resolved peaks in magnitude-mode Fourier-transform ion cyclotron resonance mass spectra.
Journal of the American Society for Mass Spectrometry 2002;13(4):387-401.
2002: Hai Luo; Mary S Lipton; Richard D Smith
Charge effects for differentiation of oligodeoxynucleotide isomers containing 8-oxo-dG residues.
Journal of the American Society for Mass Spectrometry 2002;13(3):195-9.
2002: Michael B Goshe; Timothy D Veenstra; Ellen A Panisko; Thomas P Conrads; Nicolas H Angell; Richard D Smith
Phosphoprotein isotope-coded affinity tags: application to the enrichment and identification of low-abundance phosphoproteins.
Analytical chemistry 2002;74(3):607-16.
2002: Richard Harkewicz; Mikhail E Belov; Gordon A Anderson; Ljiljana Pasa-Tolić; Christophe Masselon; David C Prior; Harold R Udseth; Richard D Smith
ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation.
Journal of the American Society for Mass Spectrometry 2002;13(2):144-54.
2002: Richard D Smith
Advanced mass spectrometric methods for the rapid and quantitative characterization of proteomes.
Comparative and functional genomics 2002;3(2):143-50.
2002: Richard D Smith; Gordon A Anderson; Mary S Lipton; Christophe Masselon; Ljiljana Pasa-Tolic; Yufeng Shen; Harold R Udseth
The use of accurate mass tags for high-throughput microbial proteomics.
Omics : a journal of integrative biology 2002;6(1):61-90.
2002: Suzana Martinović; Timothy D Veenstra; Gordon A Anderson; Ljiljana Pasa-Tolić; Richard D Smith
Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level.
Journal of mass spectrometry : JMS 2002;37(1):99-107.
2002: Christophe Masselon; Aleksey V Tolmachev; Gordon A Anderson; Richard Harkewicz; Richard D Smith
Mass measurement errors caused by 'local" frequency perturbations in FTICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2002;13(1):99-106.
2001: Mikhail E Belov; MV Gorshkov; Harold R Udseth; Richard D Smith
Controlled ion fragmentation in a 2-D quadrupole ion trap for external ion accumulation in ESI FTICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2001;12(12):1312-9.
2001: Mikhail E Belov; Gordon A Anderson; N H Angell; Yufeng Shen; Nikola Tolic; Harold R Udseth; Richard D Smith
Dynamic range expansion applied to mass spectrometry based on data-dependent selective ion ejection in capillary liquid chromatography fourier transform ion cyclotron resonance for enhanced proteome characterization.
Analytical chemistry 2001;73(21):5052-60.
2001: MV Gorshkov; Christophe Masselon; Gordon A Anderson; Harold R Udseth; Richard Harkewicz; Richard D Smith
A dynamic ion cooling technique for FTICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2001;12(11):1169-73.
2001: T Kim; Keqi Tang; Harold R Udseth; Richard D Smith
A multicapillary inlet jet disruption electrodynamic ion funnel interface for improved sensitivity using atmospheric pressure ion sources.
Analytical chemistry 2001;73(17):4162-70.
2001: Ravi S Kane; P T Glink; R G Chapman; J Cooper McDonald; PK Jensen; H Gao; L Pasa-Tolić; Richard D Smith; George M Whitesides
Basicity of the amino groups of the aminoglycoside amikacin using capillary electrophoresis and coupled CE-MS-MS techniques.
Analytical chemistry 2001;73(16):4028-36.
2001: L Li; Christophe Masselon; Gordon A Anderson; L Pasa-Tolić; Sang-Won Lee; Yufeng Shen; Rui Zhao; Mary S Lipton; Thomas P Conrads; N Tolić; Richard D Smith
High-throughput peptide identification from protein digests using data-dependent multiplexed tandem FTICR mass spectrometry coupled with capillary liquid chromatography.
Analytical chemistry 2001;73(14):3312-22.
2001: Yufeng Shen; N Tolić; Rui Zhao; L Pasa-Tolić; L Li; Scott J Berger; Richard Harkewicz; Gordon A Anderson; Mikhail E Belov; Richard D Smith
High-throughput proteomics using high-efficiency multiple-capillary liquid chromatography with on-line high-performance ESI FTICR mass spectrometry.
Analytical chemistry 2001;73(13):3011-21.
2001: Michael B Goshe; Thomas P Conrads; Ellen A Panisko; N H Angell; Timothy D Veenstra; Richard D Smith
Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses.
Analytical chemistry 2001;73(11):2578-86.
2001: Richard D Smith; L Pasa-Tolić; Mary S Lipton; PK Jensen; Gordon A Anderson; Yufeng Shen; Thomas P Conrads; Harold R Udseth; Richard Harkewicz; Mikhail E Belov; Christophe Masselon; Timothy D Veenstra
Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry.
Electrophoresis 2001;22(9):1652-68.
2001: Thomas P Conrads; Kim Alving; Timothy D Veenstra; Mikhail E Belov; Gordon A Anderson; D J Anderson; Mary S Lipton; L Pasa-Tolić; Harold R Udseth; W B Chrisler; Brian D Thrall; Richard D Smith
Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling.
Analytical chemistry 2001;73(9):2132-9.
2001: Yufeng Shen; Scott J Berger; Richard D Smith
High-efficiency capillary isoelectric focusing of protein complexes from Escherichia coli cytosolic extracts.
Journal of chromatography. A 2001;914(1-2):257-64.
2001: Yufeng Shen; Rui Zhao; Mikhail E Belov; Thomas P Conrads; Gordon A Anderson; Keqi Tang; L Pasa-Tolić; Timothy D Veenstra; Mary S Lipton; Harold R Udseth; Richard D Smith
Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics.
Analytical chemistry 2001;73(8):1766-75.
2001: K Tang; Y Lin; D W Matson; T Kim; Richard D Smith
Generation of multiple electrosprays using microfabricated emitter arrays for improved mass spectrometric sensitivity.
Analytical chemistry 2001;73(8):1658-63.
2001: Keqi Tang; Richard D Smith
Physical/chemical separations in the break-up of highly charged droplets from electrosprays.
Journal of the American Society for Mass Spectrometry 2001;12(3):343-7.
2001: Mikhail E Belov; Evgueni Nikolaev; Gordon A Anderson; Harold R Udseth; Thomas P Conrads; Timothy D Veenstra; Christophe Masselon; MV Gorshkov; Richard D Smith
Design and performance of an ESI interface for selective external ion accumulation coupled to a Fourier transform ion cyclotron mass spectrometer.
Analytical chemistry 2001;73(2):253-61.
2001: Mikhail E Belov; MV Gorshkov; Kim Alving; Richard D Smith
Optimal pressure conditions for unbiased external ion accumulation in a two-dimensional radio-frequency quadrupole for Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2001;15(21):1988-96.
2001: MV Gorshkov; Christophe Masselon; Gordon A Anderson; Harold R Udseth; Richard D Smith
Dynamically assisted gated trapping for Fourier transform ion cyclotron mass spectrometry.
Rapid communications in mass spectrometry : RCM 2001;15(17):1558-61.
2001: Mikhail E Belov; Evgueni Nikolaev; Kim Alving; Richard D Smith
A new technique for unbiased external ion accumulation in a quadrupole two-dimensional ion trap for electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2001;15(14):1172-80.
2001: Mikhail E Belov; Evgueni Nikolaev; Gordon A Anderson; Kenneth J Auberry; Richard Harkewicz; Richard D Smith
Electrospray ionization-Fourier transform ion cyclotron mass spectrometry using ion preselection and external accumulation for ultrahigh sensitivity.
Journal of the American Society for Mass Spectrometry 2001;12(1):38-48.
2000: S Martinović; Scott J Berger; L Pasa-Tolić; Richard D Smith
Separation and detection of intact noncovalent protein complexes from mixtures by on-line capillary isoelectric focusing-mass spectrometry.
Analytical chemistry 2000;72(21):5356-60.
2000: Yufeng Shen; Scott J Berger; Richard D Smith
Capillary isoelectric focusing of yeast cells.
Analytical chemistry 2000;72(19):4603-7.
2000: S Martinović; Christophe Masselon; PK Jensen; C L Stone; Richard D Smith
Characterization of human alcohol dehydrogenase isoenzymes by capillary isoelectric focusing-mass spectrometry.
Electrophoresis 2000;21(12):2368-75.
2000: F Xiang; Gordon A Anderson; Timothy D Veenstra; Mary S Lipton; Richard D Smith
Characterization of microorganisms and biomarker development from global ESI-MS/MS analyses of cell lysates.
Analytical chemistry 2000;72(11):2475-81.
2000: Mikhail E Belov; MV Gorshkov; Harold R Udseth; Gordon A Anderson; Richard D Smith
Zeptomole-sensitivity electrospray ionization--Fourier transform ion cyclotron resonance mass spectrometry of proteins.
Analytical chemistry 2000;72(10):2271-9.
2000: T Kim; Aleksey V Tolmachev; Richard Harkewicz; David C Prior; G Anderson; Harold R Udseth; Richard D Smith
Design and implementation of a new electrodynamic ion funnel.
Analytical chemistry 2000;72(10):2247-55.
2000: Yufeng Shen; Scott J Berger; Gordon A Anderson; Richard D Smith
High-efficiency capillary isoelectric focusing of peptides.
Analytical chemistry 2000;72(9):2154-9.
2000: James E Bruce; Gordon A Anderson; M D Brands; Ljiljana Pasa-Tolic; Richard D Smith
Obtaining more accurate Fourier transform ion cyclotron resonance mass measurements without internal standards using multiply charged ions.
Journal of the American Society for Mass Spectrometry 2000;11(5):416-21.
2000: Christophe Masselon; Gordon A Anderson; Richard Harkewicz; James E Bruce; Ljiljana Pasa-Tolic; Richard D Smith
Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures.
Analytical chemistry 2000;72(8):1918-24.
2000: PK Jensen; L Pasa-Tolić; K K Peden; S Martinović; Mary S Lipton; Gordon A Anderson; N Tolić; K K Wong; Richard D Smith
Mass spectrometric detection for capillary isoelectric focusing separations of complex protein mixtures.
Electrophoresis 2000;21(7):1372-80.
2000: C X Zhang; F Xiang; L Pasa-Tolić; Gordon A Anderson; Timothy D Veenstra; Richard D Smith
Stepwise mobilization of focused proteins in capillary isoelectric focusing mass spectrometry.
Analytical chemistry 2000;72(7):1462-8.
2000: D S Wunschel; L P Tolić; B Feng; Richard D Smith
Electrospray ionization Fourier transform ion cyclotron resonance analysis of large polymerase chain reaction products.
Journal of the American Society for Mass Spectrometry 2000;11(4):333-7.
2000: David R Goodlett; James E Bruce; Gordon A Anderson; Beate Rist; Ljiljana Pasa-Tolic; O Fiehn; Richard D Smith; Ruedi Aebersold
Protein identification with a single accurate mass of a cysteine-containing peptide and constrained database searching.
Analytical chemistry 2000;72(6):1112-8.
2000: Aleksey V Tolmachev; Harold R Udseth; Richard D Smith
Charge capacity limitations of radio frequency ion guides in their use for improved ion accumulation and trapping in mass spectrometry.
Analytical chemistry 2000;72(5):970-8.
2000: J Wen; Y Lin; F Xiang; D W Matson; Harold R Udseth; Richard D Smith
Microfabricated isoelectric focusing device for direct electrospray ionization-mass spectrometry.
Electrophoresis 2000;21(1):191-7.
2000: James E Bruce; Gordon A Anderson; C Y Lin; MV Gorshkov; A L Rockwood; Richard D Smith
A novel high-performance fourier transform ion cyclotron resonance cell for improved biopolymer characterization.
Journal of mass spectrometry : JMS 2000;35(1):85-94.
2000: B Feng; Richard D Smith
A simple nanoelectrospray arrangement with controllable flowrate for mass analysis of submicroliter protein samples.
Journal of the American Society for Mass Spectrometry 2000;11(1):94-9.
2000: Timothy D Veenstra; S Martinović; Gordon A Anderson; L Pasa-Tolić; Richard D Smith
Proteome analysis using selective incorporation of isotopically labeled amino acids.
Journal of the American Society for Mass Spectrometry 2000;11(1):78-82.
2000: Mikhail E Belov; MV Gorshkov; Harold R Udseth; Gordon A Anderson; Aleksey V Tolmachev; David C Prior; Richard Harkewicz; Richard D Smith
Initial implementation of an electrodynamic ion funnel with Fourier transform ion cyclotron resonance mass spectrometry.
Journal of the American Society for Mass Spectrometry 2000;11(1):19-23.
1999: Yufeng Shen; F Xiang; Timothy D Veenstra; E N Fung; Richard D Smith
High-resolution capillary isoelectric focusing of complex protein mixtures from lysates of microorganisms.
Analytical chemistry 1999;71(23):5348-53.
1999: S A Shaffer; Aleksey V Tolmachev; David C Prior; Gordon A Anderson; Harold R Udseth; Richard D Smith
Characterization of an improved electrodynamic ion funnel interface for electrospray ionization mass spectrometry.
Analytical chemistry 1999;71(15):2957-64.
1999: James E Bruce; Gordon A Anderson; J Wen; Richard Harkewicz; Richard D Smith
High-mass-measurement accuracy and 100% sequence coverage of enzymatically digested bovine serum albumin from an ESI-FTICR mass spectrum.
Analytical chemistry 1999;71(14):2595-9.
1999: N Xu; L Pasa-Tolić; Richard D Smith; S Ni; Brian D Thrall
Electrospray ionization-mass spectrometry study of the interaction of cisplatin-adducted oligonucleotides with human XPA minimal binding domain protein.
Analytical biochemistry 1999;272(1):26-33.
1999: PK Jensen; L Pasa-Tolić; Gordon A Anderson; J A Horner; Mary S Lipton; James E Bruce; Richard D Smith
Probing proteomes using capillary isoelectric focusing-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 1999;71(11):2076-84.
1999: J Gao; Q Wu; Jeffrey D Carbeck; Q P Lei; Richard D Smith; George M Whitesides
Probing the energetics of dissociation of carbonic anhydrase-ligand complexes in the gas phase.
Biophysical journal 1999;76(6):3253-60.
1999: F Xiang; Y Lin; J Wen; D W Matson; Richard D Smith
An integrated microfabricated device for dual microdialysis and on-line ESI-ion trap mass spectrometry for analysis of complex biological samples.
Analytical chemistry 1999;71(8):1485-90.
1999: MV Gorshkov; Ljiljana Pasa-Tolic; Richard D Smith
Pressure limited sustained off-resonance irradiation for collision-activated dissociation in fourier transform mass spectrometry.
Journal of the American Society for Mass Spectrometry 1999;10(1):15-8.
1998: Linda L Randall; Simon J S Hardy; Traci B Topping; Virginia F Smith; James E Bruce; Richard D Smith
The interaction between the chaperone SecB and its ligands: evidence for multiple subsites for binding.
Protein science : a publication of the Protein Society 1998;7(11):2384-90.
1998: S A Shaffer; David C Prior; Gordon A Anderson; Harold R Udseth; Richard D Smith
An ion funnel interface for improved ion focusing and sensitivity using electrospray ionization mass spectrometry.
Analytical chemistry 1998;70(19):4111-9.
1998: N Xu; Y Lin; SA Hofstadler; D Matson; C J Call; Richard D Smith
A microfabricated dialysis device for sample cleanup in electrospray ionization mass spectrometry.
Analytical chemistry 1998;70(17):3553-6.
1998: C Liu; L P Tolić; SA Hofstadler; A C Harms; Richard D Smith; C Kang; N Sinha
Probing RegA/RNA interactions using electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry.
Analytical biochemistry 1998;262(1):67-76.
1998: MV Gorshkov; L Pása Tolić; Harold R Udseth; Gordon A Anderson; B M Huang; James E Bruce; David C Prior; SA Hofstadler; L Tang; L Z Chen; J A Willett; A L Rockwood; M S Sherman; Richard D Smith
Electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry at 11.5 tesla: instrument design and initial results.
Journal of the American Society for Mass Spectrometry 1998;9(7):692-700.
1998: L Pasa Tolić; A C Harms; Gordon A Anderson; Richard D Smith; A Willie; M S Jorns
Electrospray ionization-mass spectrometry characterization of heterotetrameric sarcosine oxidase.
Journal of the American Society for Mass Spectrometry 1998;9(5):510-5.
1998: James E Bruce; Virginia F Smith; C Liu; Linda L Randall; Richard D Smith
The observation of chaperone-ligand noncovalent complexes with electrospray ionization mass spectrometry.
Protein science : a publication of the Protein Society 1998;7(5):1180-5.
1998: C Liu; SA Hofstadler; J A Bresson; Harold R Udseth; T Tsukuda; Richard D Smith; A P Synder
On-line dual microdialysis with ESI-MS for direct analysis of complex biological samples and microorganism lysates.
Analytical chemistry 1998;70(9):1797-801.
1998: James E Bruce; Gordon A Anderson; Harold R Udseth; Richard D Smith
Large Molecule Characterization Based upon Individual Ion Detection with Electrospray Ionization-FTICR Mass Spectrometry.
Analytical chemistry 1998;70(3):519-25.
1998: L P Tolić; James E Bruce; Q P Lei; Gordon A Anderson; Richard D Smith
In-trap cleanup of proteins from electrospray ionization using soft sustained off-resonance irradiation with fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 1998;70(2):405-8.
1997: J C Severs; Richard D Smith
Characterization of the microdialysis junction interface for capillary electrophoresis/microelectrospray ionization mass spectrometry.
Analytical chemistry 1997;69(11):2154-8.
1997: D C Muddiman; Gordon A Anderson; SA Hofstadler; Richard D Smith
Length and base composition of PCR-amplified nucleic acids using mass measurements from electrospray ionization mass spectrometry.
Analytical chemistry 1997;69(8):1543-9.
1997: MV Gorshkov; L Pasa-Tolić; James E Bruce; Gordon A Anderson; Richard D Smith
A dual-trap design and its applications in electrospray ionization FTICR mass spectrometry.
Analytical chemistry 1997;69(7):1307-14.
1996: J C Severs; SA Hofstadler; Z Zhao; R T Senh; Richard D Smith
The interface of capillary electrophoresis with high performance Fourier transform ion cyclotron resonance mass spectrometry for biomolecule characterization.
Electrophoresis 1996;17(12):1808-17.
1996: D C Muddiman; D S Wunschel; C Liu; L Pasa-Tolić; Karen F Fox; Alvin Fox; Gordon A Anderson; Richard D Smith
Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry.
Analytical chemistry 1996;68(21):3705-12.
1996: C Liu; Q Wu; A C Harms; Richard D Smith
On-line microdialysis sample cleanup for electrospray ionization mass spectrometry of nucleic acid samples.
Analytical chemistry 1996;68(18):3295-9.
1996: X Cheng; P E Morin; A C Harms; James E Bruce; Y Ben-David; Richard D Smith
Mass spectrometric characterization of sequence-specific complexes of DNA and transcription factor PU.1 DNA binding domain.
Analytical biochemistry 1996;239(1):35-40.
1996: Q Wu; X Cheng; SA Hofstadler; Richard D Smith
Specific metal-oligonucleotide binding studied by high resolution tandem mass spectrometry.
Journal of mass spectrometry : JMS 1996;31(6):669-75.
1996: X Cheng; D G Camp; Q Wu; R Bakhtiar; D L Springer; B J Morris; James E Bruce; Gordon A Anderson; C G Edmonds; Richard D Smith
Molecular weight determination of plasmid DNA using electrospray ionization mass spectrometry.
Nucleic acids research 1996;24(11):2183-9.
1996: J Gao; X Cheng; R Chen; G B Sigal; James E Bruce; B L Schwartz; SA Hofstadler; Gordon A Anderson; Richard D Smith; George M Whitesides
Screening derivatized peptide libraries for tight binding inhibitors to carbonic anhydrase II by electrospray ionization-mass spectrometry.
Journal of medicinal chemistry 1996;39(10):1949-55.
1996: Virginia F Smith; B L Schwartz; Linda L Randall; Richard D Smith
Electrospray mass spectrometric investigation of the chaperone SecB.
Protein science : a publication of the Protein Society 1996;5(3):488-94.
1996: James E Bruce; Gordon A Anderson; Richard D Smith
"Colored" noise waveforms and quadrupole excitation for the dynamic range expansion of Fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 1996;68(3):534-41.
1996: B L Schwartz; David Gale; Richard D Smith
Noncovalent interactions observed using electrospray ionization.
Methods in molecular biology (Clifton, N.J.) 1996;61():115-27.
1996: Richard D Smith; Harold R Udseth; J H Wahl; D R Goodlett; SA Hofstadler
Capillary electrophoresis-mass spectrometry.
Methods in enzymology 1996;271():448-86.
1996: SA Hofstadler; J C Severs; Richard D Smith; F D Swanek; Andrew G Ewing
Analysis of single cells with capillary electrophoresis electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 1996;10(8):919-22.
1996: D S Wunschel; Karen F Fox; Alvin Fox; J E Bruce; D C Muddiman; Richard D Smith
Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 1996;10(1):29-35.
1995: Q Wu; S Van Orden; X Cheng; R Bakhtiar; Richard D Smith
Characterization of cytochrome c variants with high-resolution FTICR mass spectrometry: correlation of fragmentation and structure.
Analytical chemistry 1995;67(14):2498-509.
1995: SA Hofstadler; F D Swanek; David Gale; Andrew G Ewing; Richard D Smith
Capillary electrophoresis-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for direct analysis of cellular proteins.
Analytical chemistry 1995;67(8):1477-80.
1995: Z Zhao; J H Wahl; Harold R Udseth; SA Hofstadler; A F Fuciarelli; Richard D Smith
On-line capillary electrophoresis-electrospray ionization mass spectrometry of nucleotides.
Electrophoresis 1995;16(3):389-95.
1995: James E Bruce; Gordon A Anderson; R Chen; X Cheng; David Gale; SA Hofstadler; B L Schwartz; Richard D Smith
Bio-affinity characterization mass spectrometry.
Rapid communications in mass spectrometry : RCM 1995;9(8):644-50.
1994: R Bakhtiar; Q Wu; SA Hofstadler; Richard D Smith
Charge state specific facile gas-phase cleavage of Asp 75-Met 76 peptide bond in the alpha-chain of human apohemoglobin probed by electrospray ionization mass spectrometry.
Biological mass spectrometry 1994;23(11):707-10.
1994: X Cheng; R Bakhtiar; S Van Orden; Richard D Smith
Charge-state shifting of individual multiply-charged ions of bovine albumin dimer and molecular weight determination using an individual-ion approach.
Analytical chemistry 1994;66(13):2084-7.
1993: C G Edmonds; J A Loo; Richard D Smith; A F Fuciarelli; Brian D Thrall; J E Morris; D L Springer
Evaluation of histone sequence and modifications by electrospray ionization mass spectrometry and tandem mass spectrometry.
Journal of toxicology and environmental health 1993;40(2-3):159.
1993: Richard D Smith; J H Wahl; K J Light-Wahl; B E Winger
New developments in microscale separations and mass spectrometry for biomonitoring: capillary electrophoresis and electrospray ionization mass spectrometry.
Journal of toxicology and environmental health 1993;40(2-3):147-58.
1993: J H Wahl; D R Goodlett; Harold R Udseth; Richard D Smith
Use of small-diameter capillaries for increasing peptide and protein detection sensitivity in capillary electrophoresis-mass spectrometry.
Electrophoresis 1993;14(5-6):448-57.
1993: D R Goodlett; D G Camp; C C Hardin; M Corregan; Richard D Smith
Direct observation of a DNA quadruplex by electrospray ionization mass spectrometry.
Biological mass spectrometry 1993;22(3):181-3.
1993: J A Loo; C G Edmonds; Richard D Smith
Tandem mass spectrometry of very large molecules. 2. Dissociation of multiply charged proline-containing proteins from electrospray ionization.
Analytical chemistry 1993;65(4):425-38.
1993: K J Light-Wahl; J A Loo; C G Edmonds; Richard D Smith; Halina Ewa Witkowska; C H Shackleton; C S Wu
Collisionally activated dissociation and tandem mass spectrometry of intact hemoglobin beta-chain variant proteins with electrospray ionization.
Biological mass spectrometry 1993;22(2):112-20.
1992: R R Loo; J A Loo; Harold R Udseth; J L Fulton; Richard D Smith
Protein structural effects in gas phase ion/molecule reactions with diethylamine.
Rapid communications in mass spectrometry : RCM 1992;6(3):159-65.
1992: J A Loo; R R Loo; K J Light; C G Edmonds; Richard D Smith
Multiply charged negative ions by electrospray ionization of polypeptides and proteins.
Analytical chemistry 1992;64(1):81-8.
1991: C G Edmonds; J A Loo; R R Loo; Harold R Udseth; C J Barinaga; Richard D Smith
Application of electrospray ionization mass spectrometry and tandem mass spectrometry in combination with capillary electrophoresis for biochemical investigations.
Biochemical Society transactions 1991;19(4):943-7.
1991: J A Loo; C G Edmonds; Richard D Smith
Tandem mass spectrometry of very large molecules: serum albumin sequence information from multiply charged ions formed by electrospray ionization.
Analytical chemistry 1991;63(21):2488-99.
1991: J A Loo; R R Loo; Harold R Udseth; C G Edmonds; Richard D Smith
Solvent-induced conformational changes of polypeptides probed by electrospray-ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM 1991;5(3):101-5.
1990: Richard D Smith; J A Loo; C G Edmonds; C J Barinaga; Harold R Udseth
Sensitivity considerations for large molecule detection by capillary electrophoresis-electrospray ionization mass spectrometry.
Journal of chromatography 1990;516(1):157-65.
1990: Richard D Smith; S M Fields; J A Loo; C J Barinaga; Harold R Udseth; C G Edmonts
Capillary isotachophoresis with UV and tandem mass spectrometric detection for peptides and proteins.
Electrophoresis 1990;11(9):709-17.
1990: Richard D Smith; J A Loo; C G Edmonds; C J Barinaga; Harold R Udseth
New developments in biochemical mass spectrometry: electrospray ionization.
Analytical chemistry 1990;62(9):882-99.
1990: J A Loo; C G Edmonds; Richard D Smith
Primary sequence information from intact proteins by electrospray ionization tandem mass spectrometry.
Science (New York, N.Y.) 1990;248(4952):201-4.
1990: J A Loo; C G Edmonds; Harold R Udseth; Richard D Smith
Effect of reducing disulfide-containing proteins on electrospray ionization mass spectra.
Analytical chemistry 1990;62(7):693-8.
1989: Richard D Smith; J A Loo; C J Barinaga; C G Edmonds; Harold R Udseth
Capillary zone electrophoresis and isotachophoresis-mass spectrometry of polypeptides and proteins based upon an electrospray ionization interface.
Journal of chromatography 1989;480():211-32.
1989: J A Loo; Harold R Udseth; Richard D Smith
Peptide and protein analysis by electrospray ionization-mass spectrometry and capillary electrophoresis-mass spectrometry.
Analytical biochemistry 1989;179(2):404-12.
1989: Richard D Smith; Harold R Udseth; J A Loo; B W Wright; G A Ross
Sample introduction and separation in capillary electrophoresis, and combination with mass spectrometric detection.
Talanta 1989;36(1-2):161-9.