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Cláudio Soares

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TOP 3
Bruno M Fonseca; Sónia E Neto; Isabel Pacheco; Catarina M Paquete; Cláudio M Soares; Ricardo Louro
Mind the gap: cytochrome interactions reveal electron pathways across the periplasm of Shewanella oneidensis MR-1.
Bruno L Victor; António M Baptista; Cláudio M Soares
Structural determinants for the membrane insertion of the transmembrane peptide of hemagglutinin from influenza virus.
Elisa Campos; João C Dias; Tudor Luchian; Colin E McVey; A Sofia F Oliveira; Cláudio M Soares; Alina Asandei; Yann Astier
The role of Lys147 in the interaction between MPSA-gold nanoparticles and the α-hemolysin nanopore.

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All Publications

2013: Bruno M Fonseca; Sónia E Neto; Isabel Pacheco; Catarina M Paquete; Cláudio M Soares; Ricardo Louro
Mind the gap: cytochrome interactions reveal electron pathways across the periplasm of Shewanella oneidensis MR-1.
The Biochemical journal 2013;449(1):101-8.
2012: Bruno L Victor; António M Baptista; Cláudio M Soares
Structural determinants for the membrane insertion of the transmembrane peptide of hemagglutinin from influenza virus.
Journal of chemical information and modeling 2012;52(11):3001-12.
2012: Elisa Campos; João C Dias; Tudor Luchian; Colin E McVey; A Sofia F Oliveira; Cláudio M Soares; Alina Asandei; Yann Astier
The role of Lys147 in the interaction between MPSA-gold nanoparticles and the α-hemolysin nanopore.
Langmuir : the ACS journal of surfaces and colloids 2012;28(44):15643-50.
2012: Sara Pires; Murat Sezer; Cláudio M Soares; Jelena Habjanič; Lars Hemmingsen; Olga Iranzo
Design of a peptidic turn with high affinity for Hg(II).
Inorganic chemistry 2012;51(21):11339-48.
2012: Diana Lousa; António M Baptista; Michele Cianci; Peter J Halling; John R Helliwell; Cláudio M Soares
Interaction of counterions with subtilisin in acetonitrile: insights from molecular dynamics simulations.
The journal of physical chemistry. B 2012;116(20):5838-48.
2012: Carla S A Baltazar; Vitor H Teixeira; Cláudio M Soares
Structural features of [NiFeSe] and [NiFe] hydrogenases determining their different properties: a computational approach.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2012;17(4):543-55.
2012: Cláudio M Soares; António M Baptista
Simulation of multihaem cytochromes.
FEBS letters 2012;586(5):510-8.
2012: Diana Lousa; António M Baptista; Cláudio M Soares
Analyzing the molecular basis of enzyme stability in ethanol/water mixtures using molecular dynamics simulations.
Journal of chemical information and modeling 2012;52(2):465-73.
2012: Catarina S Silva; Cláudio M Soares; Vânia Brissos; Zhenjia Chen; João M Damas; Peter F Lindley; Lígia O. Martins; Isabel Bento
The role of Asp116 in the reductive cleavage of dioxygen to water in CotA laccase: assistance during the proton-transfer mechanism.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 2):186-93.
2011: A Sofia F Oliveira; António M Baptista; Cláudio M Soares
Inter-domain communication mechanisms in an ABC importer: a molecular dynamics study of the MalFGK2E complex.
PLoS computational biology 2011;7(8):e1002128.
2011: João M Damas; A Sofia F Oliveira; António M Baptista; Cláudio M Soares
Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: molecular dynamics studies of HlyB.
Protein science : a publication of the Protein Society 2011;20(7):1220-30.
2011: A Sofia Oliveira; António M Baptista; Cláudio M Soares
Conformational changes induced by ATP-hydrolysis in an ABC transporter: a molecular dynamics study of the Sav1866 exporter.
Proteins 2011;79(6):1977-90.
2010: Miguel Machuqueiro; Sara R R Campos; Cláudio M Soares; António M Baptista
Membrane-induced conformational changes of kyotorphin revealed by molecular dynamics simulations.
The journal of physical chemistry. B 2010;114(35):11659-67.
2010: André T Fernandes; João M Damas; Smilja Todorovic; Robert Huber; M Camilla Baratto; Rebecca Pogni; Cláudio M Soares; Lígia O. Martins
The multicopper oxidase from the archaeon Pyrobaculum aerophilum shows nitrous oxide reductase activity.
The FEBS journal 2010;277(15):3176-89.
2010: Susana Gonçalves; Nuno Borges; Ana M Esteves; Bruno L Victor; Cláudio M Soares; Helena Santos; Pedro M Matias
Structural analysis of Thermus thermophilus HB27 mannosyl-3-phosphoglycerate synthase provides evidence for a second catalytic metal ion and new insight into the retaining mechanism of glycosyltransferases.
The Journal of biological chemistry 2010;285(23):17857-68.
2010: Isabel Bento; Catarina S Silva; Zhenjia Chen; Lígia O. Martins; Peter F Lindley; Cláudio M Soares
Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer.
BMC structural biology 2010;10():28.
2009: Bruno L Victor; António M Baptista; Cláudio M Soares
Dioxygen and nitric oxide pathways and affinity to the catalytic site of rubredoxin:oxygen oxidoreductase from Desulfovibrio gigas.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2009;14(6):853-62.
2009: Bruno M Fonseca; Ivo H Saraiva; Catarina M Paquete; Cláudio M Soares; Isabel Pacheco; Carlos A Salgueiro; Ricardo Louro
The tetraheme cytochrome from Shewanella oneidensis MR-1 shows thermodynamic bias for functional specificity of the hemes.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2009;14(3):375-85.
2008: Nuno M Micaelo; Bruno L Victor; Cláudio M Soares
Protein thermal stabilization by charged compatible solutes: Computational studies in rubredoxin from Desulfovibrio gigas.
Proteins 2008;72(2):580-8.
2008: Cristina Escrevente; Vanessa A Morais; Sascha Keller; Cláudio M Soares; Peter Altevogt; Júlia Costa
Functional role of N-glycosylation from ADAM10 in processing, localization and activity of the enzyme.
Biochimica et biophysica acta 2008;1780(6):905-13.
2008: Paulo Durão; Zhenjia Chen; Catarina S Silva; Cláudio M Soares; Manuela M Pereira; Smilja Todorovic; Peter Hildebrandt; Isabel Bento; Peter F Lindley; Lígia O. Martins
Proximal mutations at the type 1 copper site of CotA laccase: spectroscopic, redox, kinetic and structural characterization of I494A and L386A mutants.
The Biochemical journal 2008;412(2):339-46.
2008: Vitor H Teixeira; Cláudio M Soares; António M Baptista
Proton pathways in a [NiFe]-hydrogenase: A theoretical study.
Proteins 2008;70(3):1010-22.
2008: João Rodrigues; Bruno L Victor; Harald Huber; Lígia M Saraiva; Cláudio M Soares; Diane E Cabelli; Miguel Teixeira
Superoxide reduction by Nanoarchaeum equitans neelaredoxin, an enzyme lacking the highly conserved glutamate iron ligand.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2008;13(2):219-28.
2007: Paula Gaspar; Ana Rute Neves; Claire Shearman; Michael J Gasson; António M Baptista; David L Turner; Cláudio M Soares; Helena Santos
The lactate dehydrogenases encoded by the ldh and ldhB genes in Lactococcus lactis exhibit distinct regulation and catalytic properties - comparative modeling to probe the molecular basis.
The FEBS journal 2007;274(22):5924-36.
2007: Manuela Broco; Cláudio M Soares; Solange Oliveira; Stephen G Mayhew; Claudina Rodrigues-Pousada
Molecular determinants for FMN-binding in Desulfovibrio gigas flavoredoxin.
FEBS letters 2007;581(23):4397-402.
2007: André T Fernandes; Cláudio M Soares; Manuela M Pereira; Robert Huber; Gregor Grass; Lígia O. Martins
A robust metallo-oxidase from the hyperthermophilic bacterium Aquifex aeolicus.
The FEBS journal 2007;274(11):2683-94.
2007: Nuno M Micaêlo; Cláudio M Soares
Modeling hydration mechanisms of enzymes in nonpolar and polar organic solvents.
The FEBS journal 2007;274(9):2424-36.
2007: Rita Araújo; Carla Silva; Alexandre O'Neill; Nuno M Micaelo; Georg M Guebitz; Cláudio M Soares; Margarida Casal; Artur Cavaco-Paulo
Tailoring cutinase activity towards polyethylene terephthalate and polyamide 6,6 fibers.
Journal of biotechnology 2007;128(4):849-57.
2006: Vitor H Teixeira; António M Baptista; Cláudio M Soares
Pathways of H2 toward the active site of [NiFe]-hydrogenase.
Biophysical journal 2006;91(6):2035-45.
2006: Rita Rocha; Sónia S Leal; Vitor H Teixeira; Manuela Regalla; Harald Huber; António M Baptista; Cláudio M Soares; Cláudio M. Gomes
Natural domain design: enhanced thermal stability of a zinc-lacking ferredoxin isoform shows that a hydrophobic core efficiently replaces the structural metal site.
Biochemistry 2006;45(34):10376-84.
2006: Nuno M Micaelo; António M Baptista; Cláudio M Soares
Parametrization of 1-butyl-3-methylimidazolium hexafluorophosphate/nitrate ionic liquid for the GROMOS force field.
The journal of physical chemistry. B 2006;110(29):14444-51.
2005: A Sofia F Oliveira; Vitor H Teixeira; António M Baptista; Cláudio M Soares
Reorganization and conformational changes in the reduction of tetraheme cytochromes.
Biophysical journal 2005;89(6):3919-30.
2005: Pedro M Matias; Inês A C Pereira; Cláudio M Soares; Maria Arménia Carrondo
Sulphate respiration from hydrogen in Desulfovibrio bacteria: a structural biology overview.
Progress in biophysics and molecular biology 2005;89(3):292-329.
2005: Filipa M A Valente; A Sofia F Oliveira; Nicole Gnadt; Isabel Pacheco; Ana V Coelho; António V Xavier; Miguel Teixeira; Cláudio M Soares; Inês A C Pereira
Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2005;10(6):667-82.
2005: Vitor H Teixeira; Carlos A Cunha; Miguel Machuqueiro; A Sofia F Oliveira; Bruno L Victor; Cláudio M Soares; António M Baptista
On the use of different dielectric constants for computing individual and pairwise terms in poisson-boltzmann studies of protein ionization equilibrium.
The journal of physical chemistry. B 2005;109(30):14691-706.
2005: Nuno M Micaelo; Vitor H Teixeira; António M Baptista; Cláudio M Soares
Water dependent properties of cutinase in nonaqueous solvents: a computational study of enantioselectivity.
Biophysical journal 2005;89(2):999-1008.
2005: Laura Rivas; Cláudio M Soares; António M Baptista; Jalila Simaan; Roberto E Di Paolo; Daniel H Murgida; Peter Hildebrandt
Electric-field-induced redox potential shifts of tetraheme cytochromes c3 immobilized on self-assembled monolayers: surface-enhanced resonance Raman spectroscopy and simulation studies.
Biophysical journal 2005;88(6):4188-99.
2004: Bruno L Victor; António M Baptista; Cláudio M Soares
Theoretical identification of proton channels in the quinol oxidase aa3 from Acidianus ambivalens.
Biophysical journal 2004;87(6):4316-25.
2004: Mónica Serrano; Alexandre Neves; Cláudio M Soares; Charles P Moran; Adriano O Henriques
Role of the anti-sigma factor SpoIIAB in regulation of sigmaG during Bacillus subtilis sporulation.
Journal of bacteriology 2004;186(12):4000-13.
2004: Vitor H Teixeira; António M Baptista; Cláudio M Soares
Modeling electron transfer thermodynamics in protein complexes: interaction between two cytochromes c(3).
Biophysical journal 2004;86(5):2773-85.
2004: Cláudio M Soares; António M Baptista; Manuela M Pereira; Miguel Teixeira
Investigation of protonatable residues in Rhodothermus marinus caa3 haem-copper oxygen reductase: comparison with Paracoccus denitrificans aa3 haem-copper oxygen reductase.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2004;9(2):124-34.
2004: Pedro Vidinha; Neil Harper; Nuno M Micaelo; Nuno M T Lourenco; Marco D R Gomes da Silva; Joaquim M S Cabral; Carlos A M Afonso; Cláudio M Soares; Susana Barreiros
Effect of immobilization support, water activity, and enzyme ionization state on cutinase activity and enantioselectivity in organic media.
Biotechnology and bioengineering 2004;85(4):442-9.
2004: Isabel Bento; Pedro M Matias; António M Baptista; Patrícía N da Costa; Walter M A M van Dongen; Lígia M Saraiva; Thomas R Schneider; Cláudio M Soares; Maria Arménia Carrondo
Molecular basis for redox-Bohr and cooperative effects in cytochrome c3 from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studies of oxidized and reduced high-resolution structures at pH 7.6.
Proteins 2004;54(1):135-52.
2003: Nicholas J Price; Carla Pinheiro; Cláudio M Soares; David A Ashford; Cândido Pinto Ricardo; Phil A Jackson
A biochemical and molecular characterization of LEP1, an extensin peroxidase from lupin.
The Journal of biological chemistry 2003;278(42):41389-99.
2003: Isabel Bento; Vitor H Teixeira; António M Baptista; Cláudio M Soares; Pedro M Matias; Maria Arménia Carrondo
Redox-Bohr and other cooperativity effects in the nine-heme cytochrome C from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studies.
The Journal of biological chemistry 2003;278(38):36455-69.
2003: Bruno L Victor; João B Vicente; Rute Rodrigues; Solange Oliveira; Claudina Rodrigues-Pousada; Carlos Frazão; Cláudio M. Gomes; Miguel Teixeira; Cláudio M Soares
Docking and electron transfer studies between rubredoxin and rubredoxin:oxygen oxidoreductase.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2003;8(4):475-88.
2003: Cláudio M Soares; Vitor H Teixeira; António M Baptista
Protein structure and dynamics in nonaqueous solvents: insights from molecular dynamics simulation studies.
Biophysical journal 2003;84(3):1628-41.
2002: Lígia O. Martins; Cláudio M Soares; Manuela M Pereira; Miguel Teixeira; Teresa Costa; George H Jones; Adriano O Henriques
Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat.
The Journal of biological chemistry 2002;277(21):18849-59.
2002: Vitor H Teixeira; Cláudio M Soares; António M Baptista
Studies of the reduction and protonation behavior of tetraheme cytochromes using atomic detail.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2002;7(1-2):200-16.
2001: Ricardo Louro; Isabel Bento; Pedro M Matias; Teresa Catarino; António M Baptista; Cláudio M Soares; Maria Arménia Carrondo; David L Turner; António V Xavier
Conformational component in the coupled transfer of multiple electrons and protons in a monomeric tetraheme cytochrome.
The Journal of biological chemistry 2001;276(47):44044-51.
2001: Isabel A Abreu; Lígia M Saraiva; Cláudio M Soares; Miguel Teixeira; Diane E Cabelli
The mechanism of superoxide scavenging by Archaeoglobus fulgidus neelaredoxin.
The Journal of biological chemistry 2001;276(42):38995-9001.
2001: Pedro M Matias; Cláudio M Soares; Lígia M Saraiva; Ricardo Coelho; J Morais; J Le Gall; Maria Arménia Carrondo
[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2001;6(1):63-81.
2001: Margarida Santana; Manuela M Pereira; N P Elias; Cláudio M Soares; Miguel Teixeira
Gene cluster of Rhodothermus marinus high-potential iron-sulfur Protein: oxygen oxidoreductase, a caa(3)-type oxidase belonging to the superfamily of heme-copper oxidases.
Journal of bacteriology 2001;183(2):687-99.
1999: J Mendes; António M Baptista; Maria Arménia Carrondo; Cláudio M Soares
Improved modeling of side-chains in proteins with rotamer-based methods: a flexible rotamer model.
Proteins 1999;37(4):530-43.
1999: Carlos Frazão; Isabel Bento; Júlia Costa; Cláudio M Soares; Paula Verissimo; Carlos Faro; Euclides Pires; J Cooper; Maria Arménia Carrondo
Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containing aspartic proteinase from the flowers of Cynara cardunculus L.
The Journal of biological chemistry 1999;274(39):27694-701.
1999: Manuela M Pereira; Margarida Santana; Cláudio M Soares; J Mendes; João N Carita; Andreia S Fernandes; M Saraste; Maria Arménia Carrondo; Miguel Teixeira
The caa3 terminal oxidase of the thermohalophilic bacterium Rhodothermus marinus: a HiPIP:oxygen oxidoreductase lacking the key glutamate of the D-channel.
Biochimica et biophysica acta 1999;1413(1):1-13.
1999: Pedro M Matias; Lígia M Saraiva; Cláudio M Soares; Ana V Coelho; Jean Legall; Maria Arménia Carrondo
Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774:primary sequence determination, crystallographic refinement at 1.8 and modelling studies of its interaction with the tetrahaem cytochrome c3.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 1999;4(4):478-94.
1999: António M Baptista; P J Martel; Cláudio M Soares
Simulation of electron-proton coupling with a Monte Carlo method: application to cytochrome c3 using continuum electrostatics.
Biophysical journal 1999;76(6):2978-98.
1999: P J Martel; Cláudio M Soares; António M Baptista; Monika Fuxreiter; Gábor Náray-Szabó; Ricardo Louro; Maria Arménia Carrondo
Comparative redox and pKa calculations on cytochrome c3 from several Desulfovibrio species using continuum electrostatic methods.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 1999;4(1):73-86.
1995: Carlos Frazão; Cláudio M Soares; Maria Arménia Carrondo; E Pohl; Z Dauter; K S Wilson; Manuel Hervás; José A Navarro; Miguel A De la Rosa; George M Sheldrick
Ab initio determination of the crystal structure of cytochrome c6 and comparison with plastocyanin.
Structure (London, England : 1993) 1995;3(11):1159-69.