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K Soda

Research Profile

Concepts & Ideas

Genes & Molecular Sequences

Amino Acid Sequences

Chemicals & Drugs

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Cloning, Molecular

Physiology

Mutagenesis, Site-Directed

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TOP 3
Kwang-Hwan Jhee; Tohru Yoshimura; Edith Wilson Miles; S Takeda; Ikuko Miyahara; Ken Hirotsu; K Soda; Y Kawata; Nobuyoshi Esaki
Stereochemistry of the transamination reaction catalyzed by aminodeoxychorismate lyase from Escherichia coli: close relationship between fold type and stereochemistry.
Teisuke Takita; Nobuhiro Shimizu; T Sukata; S Hashimoto; E Akita; T Yokota; Nobuyoshi Esaki; K Soda; Kuniyo Inouye; Ben'ichiro Tonomura
Lysyl-tRNA synthetase of Bacillus stearothermophilus molecular cloning and expression of the gene.
V Nardi-Dei; Tatsuo Kurihara; C Park; Masaru Miyagi; Susumu Tsunasawa; K Soda; Nobuyoshi Esaki
DL-2-Haloacid dehalogenase from Pseudomonas sp. 113 is a new class of dehalogenase catalyzing hydrolytic dehalogenation not involving enzyme-substrate ester intermediate.

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2000: Kwang-Hwan Jhee; Tohru Yoshimura; Edith Wilson Miles; S Takeda; Ikuko Miyahara; Ken Hirotsu; K Soda; Y Kawata; Nobuyoshi Esaki
Stereochemistry of the transamination reaction catalyzed by aminodeoxychorismate lyase from Escherichia coli: close relationship between fold type and stereochemistry.
Journal of biochemistry 2000;128(4):679-86.
2000: Teisuke Takita; Nobuhiro Shimizu; T Sukata; S Hashimoto; E Akita; T Yokota; Nobuyoshi Esaki; K Soda; Kuniyo Inouye; Ben'ichiro Tonomura
Lysyl-tRNA synthetase of Bacillus stearothermophilus molecular cloning and expression of the gene.
Bioscience, biotechnology, and biochemistry 2000;64(2):432-7.
1999: V Nardi-Dei; Tatsuo Kurihara; C Park; Masaru Miyagi; Susumu Tsunasawa; K Soda; Nobuyoshi Esaki
DL-2-Haloacid dehalogenase from Pseudomonas sp. 113 is a new class of dehalogenase catalyzing hydrolytic dehalogenation not involving enzyme-substrate ester intermediate.
The Journal of biological chemistry 1999;274(30):20977-81.
1999: Akira Watanabe; Y Kurokawa; Tohru Yoshimura; Tatsuo Kurihara; K Soda; Nobuyoshi Esaki; A Watababe
Role of lysine 39 of alanine racemase from Bacillus stearothermophilus that binds pyridoxal 5'-phosphate. Chemical rescue studies of Lys39 --> Ala mutant.
The Journal of biological chemistry 1999;274(7):4189-94.
1998: Y Kurokawa; Akira Watanabe; Tohru Yoshimura; Nobuyoshi Esaki; K Soda
Transamination as a side-reaction catalyzed by alanine racemase of Bacillus stearothermophilus.
Journal of biochemistry 1998;124(6):1163-9.
1998: J Q Liu; Tatsuo Kurihara; Susumu Ichiyama; Masaru Miyagi; Susumu Tsunasawa; Hiroaki Kawasaki; K Soda; Nobuyoshi Esaki
Reaction mechanism of fluoroacetate dehalogenase from Moraxella sp. B.
The Journal of biological chemistry 1998;273(47):30897-902.
1998: Yoshihiro Fuchikami; Tohru Yoshimura; A Gutierrez; K Soda; Nobuyoshi Esaki
Construction and properties of a fragmentary D-amino acid aminotransferase.
Journal of biochemistry 1998;124(5):905-10.
1998: Natalia V Gorlatova; M Tchorzewski; Tatsuo Kurihara; K Soda; Nobuyoshi Esaki
Purification, characterization, and mechanism of a flavin mononucleotide-dependent 2-nitropropane dioxygenase from Neurospora crassa.
Applied and environmental microbiology 1998;64(3):1029-33.
1998: Y H Lim; Tohru Yoshimura; Y Kurokawa; Nobuyoshi Esaki; K Soda
Nonstereospecific transamination catalyzed by pyridoxal phosphate-dependent amino acid racemases of broad substrate specificity.
The Journal of biological chemistry 1998;273(7):4001-5.
1998: D W Choo; Tatsuo Kurihara; T Suzuki; K Soda; Nobuyoshi Esaki
A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization.
Applied and environmental microbiology 1998;64(2):486-91.
1998: A Gutierrez; Tohru Yoshimura; Yoshihiro Fuchikami; K Soda; Nobuyoshi Esaki
A mutant D-amino acid aminotransferase with broad substrate specificity: construction by replacement of the interdomain loop Pro119-Arg120-Pro121 by Gly-Gly-Gly.
Protein engineering 1998;11(1):53-8.
1998: Lijun Liu; Tohru Yoshimura; K Endo; Keiko Kishimoto; Yoshihiro Fuchikami; J M Manning; Nobuyoshi Esaki; K Soda
Compensation for D-glutamate auxotrophy of Escherichia coli WM335 by D-amino acid aminotransferase gene and regulation of murI expression.
Bioscience, biotechnology, and biochemistry 1998;62(1):193-5.
1997: K Kishimoto; Tohru Yoshimura; K Soda; Nobuyoshi Esaki
Mutation of arginine 98, which serves as a substrate-recognition site of D-amino acid aminotransferase, can be partly compensated for by mutation of tyrosine 88 to an arginyl residue.
Journal of biochemistry 1997;122(6):1182-9.
1997: Andrey Galkin; Liudmila Kulakova; Tohru Yoshimura; K Soda; Nobuyoshi Esaki
Synthesis of optically active amino acids from alpha-keto acids with Escherichia coli cells expressing heterologous genes.
Applied and environmental microbiology 1997;63(12):4651-6.
1997: Hisaaki Mihara; Tatsuo Kurihara; Tohru Yoshimura; K Soda; Nobuyoshi Esaki
Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme.
The Journal of biological chemistry 1997;272(36):22417-24.
1997: V Nardi-Dei; Tatsuo Kurihara; C Park; Nobuyoshi Esaki; K Soda
Bacterial DL-2-haloacid dehalogenase from Pseudomonas sp. strain 113: gene cloning and structural comparison with D- and L-2-haloacid dehalogenases.
Journal of bacteriology 1997;179(13):4232-8.
1997: Lijun Liu; Tohru Yoshimura; K Endo; Nobuyoshi Esaki; K Soda
Cloning and expression of the glutamate racemase gene of Bacillus pumilus.
Journal of biochemistry 1997;121(6):1155-61.
1997: Andrey Galkin; Liudmila Kulakova; T Ohshima; Nobuyoshi Esaki; K Soda
Construction of a new leucine dehydrogenase with preferred specificity for NADP+ by site-directed mutagenesis of the strictly NAD+-specific enzyme.
Protein engineering 1997;10(6):687-90.
1996: T Hisano; Yasuo Hata; Takahiro Fujii; J Q Liu; Tatsuo Kurihara; Nobuyoshi Esaki; K Soda
Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
The Journal of biological chemistry 1996;271(34):20322-30.
1996: K H Jhee; Tohru Yoshimura; Nobuyoshi Esaki; K Soda
Stereospecificity of thermostable ornithine 5-aminotransferase for the hydrogen transfer in the L- and D-ornithine transamination.
Biochemistry 1996;35(30):9792-6.
1996: T Hisano; Yasuo Hata; Takahiro Fujii; J Q Liu; Tatsuo Kurihara; Nobuyoshi Esaki; K Soda
Crystallization and preliminary x-ray crystallographic studies of L-2-haloacid dehalogenase from Pseudomonas sp. YL.
Proteins 1996;24(4):520-2.
1996: Tohru Yoshimura; K H Jhee; K Soda
Stereospecificity for the hydrogen transfer and molecular evolution of pyridoxal enzymes.
Bioscience, biotechnology, and biochemistry 1996;60(2):181-7.
1996: Nobuyoshi Esaki; K Soda
[Trace elements as activation factors of enzymes: characteristic enzymes and their activation mechanisms].
Nihon rinsho. Japanese journal of clinical medicine 1996;54(1):17-25.
1995: Andrey Galkin; Liudmila Kulakova; V Tishkov; Nobuyoshi Esaki; K Soda
Cloning of formate dehydrogenase gene from a methanol-utilizing bacterium Mycobacterium vaccae N10.
Applied microbiology and biotechnology 1995;44(3-4):479-83.
1995: J Q Liu; Tatsuo Kurihara; V Nardi-Dei; T Okamura; Nobuyoshi Esaki; K Soda
Overexpression and feasible purification of thermostable L-2-halo acid dehalogenase of Pseudomonas sp. YL.
Biodegradation 1995;6(3):223-7.
1995: J Q Liu; Tatsuo Kurihara; M Miyagi; Nobuyoshi Esaki; K Soda
Reaction mechanism of L-2-haloacid dehalogenase of Pseudomonas sp. YL. Identification of Asp10 as the active site nucleophile by 18O incorporation experiments.
The Journal of biological chemistry 1995;270(31):18309-12.
1995: K H Jhee; Tohru Yoshimura; Nobuyoshi Esaki; K Yonaha; K Soda
Thermostable ornithine aminotransferase from Bacillus sp. YM-2: purification and characterization.
Journal of biochemistry 1995;118(1):101-8.
1995: Tatsuo Kurihara; J Q Liu; V Nardi-Dei; H Koshikawa; Nobuyoshi Esaki; K Soda
Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.
Journal of biochemistry 1995;117(6):1317-22.
1995: T Tamura; M Wada; Nobuyoshi Esaki; K Soda
Synthesis of fluoroacetate from fluoride, glycerol, and beta-hydroxypyruvate by Streptomyces cattleya.
Journal of bacteriology 1995;177(9):2265-9.
1995: K Kishimoto; Tohru Yoshimura; Nobuyoshi Esaki; Shigetoshi Sugio; J M Manning; K Soda
Role of leucine 201 of thermostable D-amino acid aminotransferase from a thermophile, Bacillus sp. YM-1.
Journal of biochemistry 1995;117(4):691-6.
1995: M Ashiuchi; Tohru Yoshimura; T Kitamura; Yasushi Kawata; J Nagai; S Gorlatov; Nobuyoshi Esaki; K Soda
In vivo effect of GroESL on the folding of glutamate racemase of Escherichia coli.
Journal of biochemistry 1995;117(3):495-8.
1994: M Tchorzewski; Tatsuo Kurihara; Nobuyoshi Esaki; K Soda
Unique primary structure of 2-nitropropane dioxygenase from Hansenula mrakii.
European journal of biochemistry / FEBS 1994;226(3):841-6.
1994: K Kataoka; K Tanizawa; Toshiaki Fukui; Hiroshi Ueno; Tohru Yoshimura; Nobuyoshi Esaki; K Soda
Identification of active site lysyl residues of phenylalanine dehydrogenase by chemical modification with methyl acetyl phosphate combined with site-directed mutagenesis.
Journal of biochemistry 1994;116(6):1370-6.
1994: S Y Choi; Nobuyoshi Esaki; M Ashiuchi; Tohru Yoshimura; K Soda
Bacterial glutamate racemase has high sequence similarity with myoglobins and forms an equimolar inactive complex with hemin.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(21):10144-7.
1994: K Kataoka; H Takada; K Tanizawa; Tohru Yoshimura; Nobuyoshi Esaki; T Ohshima; K Soda
Construction and characterization of chimeric enzyme consisting of an amino-terminal domain of phenylalanine dehydrogenase and a carboxy-terminal domain of leucine dehydrogenase.
Journal of biochemistry 1994;116(4):931-6.
1994: V Nardi-Dei; Tatsuo Kurihara; T Okamura; J Q Liu; H Koshikawa; H Ozaki; Y Terashima; Nobuyoshi Esaki; K Soda
Comparative studies of genes encoding thermostable L-2-halo acid dehalogenase from Pseudomonas sp. strain YL, other dehalogenases, and two related hypothetical proteins from Escherichia coli.
Applied and environmental microbiology 1994;60(9):3375-80.
1994: J Q Liu; Tatsuo Kurihara; Nobuyoshi Esaki; K Soda
Reconsideration of the essential role of a histidine residue of L-2-halo acid dehalogenase.
Journal of biochemistry 1994;116(2):248-9.
1994: J Q Liu; Tatsuo Kurihara; A K Hasan; V Nardi-Dei; H Koshikawa; Nobuyoshi Esaki; K Soda
Purification and characterization of thermostable and nonthermostable 2-haloacid dehalogenases with different stereospecificities from Pseudomonas sp. strain YL.
Applied and environmental microbiology 1994;60(7):2389-93.
1994: D W Kim; Tohru Yoshimura; Nobuyoshi Esaki; E Satoh; K Soda
Studies of the active-site lysyl residue of thermostable aspartate aminotransferase: combination of site-directed mutagenesis and chemical modification.
Journal of biochemistry 1994;115(1):93-7.
1994: Y Matsushima; D W Kim; Tohru Yoshimura; Seiki Kuramitsu; Hiroyuki Kagamiyama; Nobuyoshi Esaki; K Soda
Replacement of active-site lysine-239 of thermostable aspartate aminotransferase by S-(2-aminoethyl)cysteine: properties of the mutant enzyme.
Journal of biochemistry 1994;115(1):108-12.
1993: Tohru Yoshimura; M Ashiuchi; Nobuyoshi Esaki; C Kobatake; S Y Choi; K Soda
Expression of glr (murI, dga) gene encoding glutamate racemase in Escherichia coli.
The Journal of biological chemistry 1993;268(32):24242-6.
1993: K Kataoka; H Takada; Tohru Yoshimura; S Furuyoshi; Nobuyoshi Esaki; T Ohshima; K Soda
Site-directed mutagenesis of a hexapeptide segment involved in substrate recognition of phenylalanine dehydrogenase from Thermoactinomyces intermedius.
Journal of biochemistry 1993;114(1):69-75.
1993: Y H Lim; K Yokoigawa; Nobuyoshi Esaki; K Soda
A new amino acid racemase with threonine alpha-epimerase activity from Pseudomonas putida: purification and characterization.
Journal of bacteriology 1993;175(13):4213-7.
1993: T Koide; H Itoh; Akira Otaka; H Yasui; M Kuroda; Nobuyoshi Esaki; K Soda; Nobutaka Fujii
Synthetic study on selenocystine-containing peptides.
Chemical & pharmaceutical bulletin 1993;41(3):502-6.
1993: T Tamura; T Oikawa; A Ohtaka; Nobutaka Fujii; Nobuyoshi Esaki; K Soda
Synthesis and characterization of the selenium analog of glutathione disulfide.
Analytical biochemistry 1993;208(1):151-4.
1993: K Yokoigawa; H Kawai; K Endo; Y H Lim; Nobuyoshi Esaki; K Soda
Thermolabile alanine racemase from a psychotroph, Pseudomonas fluorescens: purification and properties.
Bioscience, biotechnology, and biochemistry 1993;57(1):93-7.
1992: T Yamauchi; S Y Choi; H Okada; M Yohda; H Kumagai; Nobuyoshi Esaki; K Soda
Properties of aspartate racemase, a pyridoxal 5'-phosphate-independent amino acid racemase.
The Journal of biological chemistry 1992;267(26):18361-4.
1992: S Y Choi; Nobuyoshi Esaki; Tohru Yoshimura; K Soda
Reaction mechanism of glutamate racemase, a pyridoxal phosphate-independent amino acid racemase.
Journal of biochemistry 1992;112(1):139-42.
1992: Nobuyoshi Esaki; T Ohshima; K Soda
Structure and function of thermostable amino acid dehydrogenases.
Journal of nutritional science and vitaminology 1992;Spec No():465-8.
1992: K Soda
B6-enzymes participating in D-amino acid metabolism.
Journal of nutritional science and vitaminology 1992;Spec No():212-5.
1991: H Toyama; Nobuyoshi Esaki; Tohru Yoshimura; K Tanizawa; K Soda
Thermostable alanine racemase of Bacillus stearothermophilus: subunit dissociation and unfolding.
Journal of biochemistry 1991;110(2):279-83.
1991: H Toyama; K Tanizawa; Tohru Yoshimura; S Asano; Y H Lim; Nobuyoshi Esaki; K Soda
Thermostable alanine racemase of Bacillus stearothermophilus. Construction and expression of active fragmentary enzyme.
The Journal of biological chemistry 1991;266(21):13634-9.
1991: K Nishimura; K Tanizawa; Tohru Yoshimura; Nobuyoshi Esaki; S Futaki; J M Manning; K Soda
Effect of substitution of a lysyl residue that binds pyridoxal phosphate in thermostable D-amino acid aminotransferase by arginine and alanine.
Biochemistry 1991;30(16):4072-7.
1991: T Oikawa; Nobuyoshi Esaki; H Tanaka; K Soda
Metalloselenonein, the selenium analogue of metallothionein: synthesis and characterization of its complex with copper ions.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(8):3057-9.
1991: H Kamitani; Nobuyoshi Esaki; H Tanaka; K Soda
Degradation of L-djenkolate catalyzed by S-alkylcysteine alpha,beta-lyase from Pseudomonas putida.
Journal of biochemistry 1991;109(4):645-9.
1991: H Takada; Tohru Yoshimura; T Ohshima; Nobuyoshi Esaki; K Soda
Thermostable phenylalanine dehydrogenase of Thermoactinomyces intermedius: cloning, expression, and sequencing of its gene.
Journal of biochemistry 1991;109(3):371-6.
1991: M H Sung; K Tanizawa; H Tanaka; Seiki Kuramitsu; Hiroyuki Kagamiyama; Ken Hirotsu; A Okamoto; T Higuchi; K Soda
Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization.
The Journal of biological chemistry 1991;266(4):2567-72.
1991: H Ikeda; Nobuyoshi Esaki; S Nakai; K Hashimoto; S Uesato; K Soda; T Fujita
Acyclic monoterpene primary alcohol:NADP+ oxidoreductase of Rauwolfia serpentina cells: the key enzyme in biosynthesis of monoterpene alcohols.
Journal of biochemistry 1991;109(2):341-7.
1991: S Y Choi; Nobuyoshi Esaki; Tohru Yoshimura; K Soda
Overproduction of glutamate racemase of Pediococcus pentosaceus in Escherichia coli clone cells and its purification.
Protein expression and purification 1991;2(1):90-3.
1991: T Yagi; H Misono; K Tanizawa; Tohru Yoshimura; K Soda
Characterization of the half and overall reactions catalyzed by L-lysine:2-oxoglutarate 6-aminotransferase.
Journal of biochemistry 1991;109(1):61-5.
1990: Tohru Yoshimura; Y Matsushima; K Tanizawa; M H Sung; T Yamauchi; M Wakayama; Nobuyoshi Esaki; K Soda
Substitution of S-(beta-aminoethyl)-cysteine for active-site lysine of thermostable aspartate aminotransferase.
Journal of biochemistry 1990;108(5):699-700.
1990: H Kamitani; Nobuyoshi Esaki; H Tanaka; H Imahara; K Soda
Purification and characterization of S-alkylcysteine alpha,beta-lyase from Pseudomonas putida.
Journal of nutritional science and vitaminology 1990;36(4):339-47.
1990: H Kamitani; Nobuyoshi Esaki; H Tanaka; K Soda
Thermostable S-alkylcysteine alpha, beta-lyase from a thermophile: purification and properties.
Agricultural and biological chemistry 1990;54(8):2069-76.
1990: M H Sung; K Tanizawa; H Tanaka; Seiki Kuramitsu; H Kagamiyama; K Soda
Purification and characterization of thermostable aspartate aminotransferase from a thermophilic Bacillus species.
Journal of bacteriology 1990;172(3):1345-51.
1990: S Kuroda; K Tanizawa; Y Sakamoto; H Tanaka; K Soda
Alanine dehydrogenases from two Bacillus species with distinct thermostabilities: molecular cloning, DNA and protein sequence determination, and structural comparison with other NAD(P)(+)-dependent dehydrogenases.
Biochemistry 1990;29(4):1009-15.
1990: K Soda; K Tanizawa
Thermostable alanine racemase. Its structural stability.
Annals of the New York Academy of Sciences 1990;585():386-93.
1990: K Soda
Thermostable D-amino acid aminotransferase and its protein engineering.
Annals of the New York Academy of Sciences 1990;613():358-61.
1989: Nobuyoshi Esaki; H Shimoi; N Nakajima; T Ohshima; H Tanaka; K Soda
Enzymatic in situ determination of stereospecificity of NAD-dependent dehydrogenases.
The Journal of biological chemistry 1989;264(17):9750-2.
1989: M Sugimoto; Nobuyoshi Esaki; H Tanaka; K Soda
A simple and efficient method for the oligonucleotide-directed mutagenesis using plasmid DNA template and phosphorothioate-modified nucleotide.
Analytical biochemistry 1989;179(2):309-11.
1989: M Oka; Y S Yang; S Nagata; Nobuyoshi Esaki; H Tanaka; K Soda
Overproduction of thermostable leucine dehydrogenase of Bacillus stearothermophilus and its one-step purification from recombinant cells of Escherichia coli.
Biotechnology and applied biochemistry 1989;11(3):307-11.
1989: K Tanizawa; Y Masu; S Asano; H Tanaka; K Soda
Thermostable D-amino acid aminotransferase from a thermophilic Bacillus species. Purification, characterization, and active site sequence determination.
The Journal of biological chemistry 1989;264(5):2445-9.
1989: K Tanizawa; S Asano; Y Masu; Seiki Kuramitsu; Hiroyuki Kagamiyama; H Tanaka; K Soda
The primary structure of thermostable D-amino acid aminotransferase from a thermophilic Bacillus species and its correlation with L-amino acid aminotransferases.
The Journal of biological chemistry 1989;264(5):2450-4.
1988: S Nagata; K Tanizawa; Nobuyoshi Esaki; Y Sakamoto; T Ohshima; H Tanaka; K Soda
Gene cloning and sequence determination of leucine dehydrogenase from Bacillus stearothermophilus and structural comparison with other NAD(P)+-dependent dehydrogenases.
Biochemistry 1988;27(25):9056-62.
1988: M Sugimoto; T Oikawa; Nobuyoshi Esaki; H Tanaka; K Soda
Chemical synthesis and expression of copper metallothionein gene of Neurospora crassa.
Journal of biochemistry 1988;104(6):924-6.
1988: H Y Cho; K Tanizawa; H Tanaka; K Soda
Thermostable dipeptidase from Bacillus stearothermophilus: its purification, characterization, and comparison with aminoacylase.
Journal of biochemistry 1988;103(4):622-8.
1988: T Nakayama; Nobuyoshi Esaki; H Tanaka; K Soda
Specific labeling of the essential cysteine residue of L-methionine gamma-lyase with a cofactor analogue, N-(bromoacetyl)pyridoxamine phosphate.
Biochemistry 1988;27(5):1587-91.
1988: K Tanizawa; A Ohshima; A Scheidegger; K Inagaki; H Tanaka; K Soda
Thermostable alanine racemase from Bacillus stearothermophilus: DNA and protein sequence determination and secondary structure prediction.
Biochemistry 1988;27(4):1311-6.
1988: Nobuyoshi Esaki; V Seraneeprakarn; H Tanaka; K Soda
Purification and characterization of Clostridium sticklandii D-selenocystine alpha, beta-lyase.
Journal of bacteriology 1988;170(2):751-6.
1987: H Y Cho; K Tanizawa; H Tanaka; K Soda
A spectrophotometric rate assay of aminoacylase.
Analytical biochemistry 1987;165(1):142-6.