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Carol Soderlund

Research Profile

Devices

Bacterial Artificial Chromosomes

Genes & Molecular Sequences

Genome, Plant

Living Beings

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Chemicals & Drugs

Anatomy

Plant Chromosomes

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Computational Biology

Phenomena

DNA Fingerprinting

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Publications

TOP 3
Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
Julia W Neilson; William M Nelson; Marianyoly Ortiz; Jay Quade; Carol Soderlund; Fei Tian; Rod A Wing; Julio L Betancourt; Michelle LaComb; Antje Legatzki; Raina M Maier
Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.

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All Publications

2013: Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Microbial ecology 2013;65(2):371-83.
2013: Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
BMC plant biology 2013;13():27.
2012: Julia W Neilson; William M Nelson; Marianyoly Ortiz; Jay Quade; Carol Soderlund; Fei Tian; Rod A Wing; Julio L Betancourt; Michelle LaComb; Antje Legatzki; Raina M Maier
Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.
Extremophiles : life under extreme conditions 2012;16(3):553-66.
2012: Anupreet Kour; Marc J Orbach; Kevin Greer; Barbara Valent; Carol Soderlund
MGOS: development of a community annotation database for Magnaporthe oryzae.
Molecular plant-microbe interactions : MPMI 2012;25(3):271-8.
2012: Kerstin Büchel; Anne Descour; Trevor Fenning; David R Gang; Jonathan Gershenzon; Monika Hilker; Eric McDowell; Will Nelson; Carol Soderlund; Torsten Meiners
An elm EST database for identifying leaf beetle egg-induced defense genes.
BMC genomics 2012;13():242.
2011: Carol Soderlund; Matthew Bomhoff; William M Nelson
SyMAP v3.4: a turnkey synteny system with application to plant genomes.
Nucleic acids research 2011;39(10):e68.
2011: Eric T McDowell; Jeremy Kapteyn; Adam Schmidt; Chao Li; Jin-Ho Kang; Anne Descour; Feng Shi; Matthew Larson; Anthony Schilmiller; Lingling An; A Daniel Jones; Eran Pichersky; Carol Soderlund; David R Gang
Comparative functional genomic analysis of Solanum glandular trichome types.
Plant physiology 2011;155(1):524-39.
2009: Carol Soderlund; Anne Descour; Dave Kudrna; Matthew Bomhoff; Lomax Boyd; Jennifer Currie; Angelina Angelova; Kristi Collura; Marina Wissotski; Elizabeth Ashley; Darren Morrow; John Fernandes; Virginia Walbot; Yeisoo Yu
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS genetics 2009;5(11):e1000740.
2009: Carol Soderlund
Computational techniques for elucidating plant-pathogen interactions from large-scale experiments on fungi and oomycetes.
Briefings in bioinformatics 2009;10(6):654-63.
2009: William Nelson; Carol Soderlund
Integrating sequence with FPC fingerprint maps.
Nucleic acids research 2009;37(5):e36.
2009: Carol Soderlund; Eric Johnson; Matthew Bomhoff; Anne Descour
PAVE: program for assembling and viewing ESTs.
BMC genomics 2009;10():400.
2008: William Nelson; Meizhong Luo; Jianxin Ma; Matt Estep; James Estill; Ruifeng He; Jayson Talag; Nicholas B Sisneros; Dave Kudrna; Hyeran Kim; Jetty S S Ammiraju; Kristi Collura; Arvind K Bharti; Joachim Messing; Rod A Wing; Phillip SanMiguel; Jeffrey L Bennetzen; Carol Soderlund
Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.
BMC genomics 2008;9():621.
2008: HyeRan Kim; Bonnie Hurwitz; Yeisoo Yu; Kristi Collura; Navdeep Gill; Phillip SanMiguel; James C Mullikin; Christopher A. Maher; William Nelson; Marina Wissotski; Michele Braidotti; Dave Kudrna; José L Goicoechea; Lincoln Stein; Doreen Ware; Scott A Jackson; Carol Soderlund; Rod A Wing
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Genome biology 2008;9(2):R45.
2007: Fusheng Wei; Ed Coe; William Nelson; Arvind K Bharti; Friedrich W Engler; Ed Butler; HyeRan Kim; José L Goicoechea; Mingsheng Chen; Seunghee Lee; Galina Fuks; Hector Sanchez-Villeda; Steven Schroeder; Zhiwei Fang; Michael D McMullen; Georgia Davis; John E Bowers; Andrew H Paterson; Mary Schaeffer; Jack Gardiner; Karen Cone; Joachim Messing; Carol Soderlund; Rod A Wing
Physical and genetic structure of the maize genome reflects its complex evolutionary history.
PLoS genetics 2007;3(7):e123.
2007: Malali Gowda; RC Venu; Huameng Li; Chatchawan Jantasuriyarat; Songbiao Chen; Maria Bellizzi; Vishal Pampanwar; HyeRan Kim; Ralph A Dean; Eric Stahlberg; Rod A Wing; Carol Soderlund; Guo-Liang Wang
Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice.
Plant physiology 2007;144(1):524-33.
2007: HyeRan Kim; Phillip San Miguel; William Nelson; Kristi Collura; Marina Wissotski; Jason G Walling; Jun Pyo Kim; Scott A Jackson; Carol Soderlund; Rod A Wing
Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).
Genetics 2007;176(1):379-90.
2007: Malali Gowda; RC Venu; Yulin Jia; Eric Stahlberg; Vishal Pampanwar; Carol Soderlund; Guo-Liang Wang
Use of robust-long serial analysis of gene expression to identify novel fungal and plant genes involved in host-pathogen interactions.
Methods in molecular biology (Clifton, N.J.) 2007;354():131-44.
2007: William M Nelson; Jan Dvorak; Ming-Cheng Luo; Joachim Messing; Rod A Wing; Carol Soderlund
Efficacy of clone fingerprinting methodologies.
Genomics 2007;89(1):160-5.
2006: Carol Soderlund; Karl Haller; Vishal Pampanwar; Daniel J Ebbole; Mark L Farman; Marc J Orbach; Guo-Liang Wang; Rod A Wing; Jin-Rong Xu; Doug Brown; Thomas Mitchell; Ralph Dean
MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions.
Molecular plant-microbe interactions : MPMI 2006;19(10):1055-61.
2006: Coen Adema; Mei-Zhong Luo; Ben Hanelt; Lynn A Hertel; Jennifer J Marshall; Si-Ming Zhang; Randall J DeJong; Hye-Ran Kim; Dave Kudrna; Rod A Wing; Carol Soderlund; Matty Knight; Fred A Lewis; Roberta Lima Caldeira; Liana K Jannotti-Passos; Omar dos Santos Carvalho; Eric S Loker
A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni.
Memórias do Instituto Oswaldo Cruz 2006;101 Suppl 1():167-77.
2006: Carol Soderlund; William Nelson; Austin Shoemaker; Andrew Paterson
SyMAP: A system for discovering and viewing syntenic regions of FPC maps.
Genome research 2006;16(9):1159-68.
2006: Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara P Blackmon; Eric Fang; Jeffrey Tomkins; Darshan S Brar; David Mackill; Susan R McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
Genome research 2006;16(1):140-7.
2005: Rod A Wing; Jetty S S Ammiraju; Meizhong Luo; Hyeran Kim; Yeisoo Yu; Dave Kudrna; José L Goicoechea; Wenming Wang; William Nelson; Kiran Rao; Darshan S Brar; David Mackill; Bin Han; Carol Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Plant molecular biology 2005;59(1):53-62.
2005: William M Nelson; Arvind K Bharti; Ed Butler; Fusheng Wei; Galina Fuks; Hyeran Kim; Rod A Wing; Joachim Messing; Carol Soderlund
Whole-genome validation of high-information-content fingerprinting.
Plant physiology 2005;139(1):27-38.
2005: Vishal Pampanwar; Friedrich W Engler; James Hatfield; Steve Blundy; Gaurav Gupta; Carol Soderlund
FPC Web tools for rice, maize, and distribution.
Plant physiology 2005;138(1):116-26.
2005: Chatchawan Jantasuriyarat; Malali Gowda; Karl Haller; James Hatfield; Guodong Lu; Eric Stahlberg; Bo Zhou; Huameng Li; HyRan Kim; Yeisoo Yu; Ralph A Dean; Rod A Wing; Carol Soderlund; Guo-Liang Wang
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.
Plant physiology 2005;138(1):105-15.
2005: Nicole Donofrio; Ravi Rajagopalon; Douglas Brown; Stephen Diener; Donald Windham; Shelly J Nolin; Anna Floyd; Thomas Mitchell; Natalia Galadima; Sara Tucker; Marc J Orbach; Gayatri Patel; Mark L Farman; Vishal Pampanwar; Carol Soderlund; Yong-Hwan Lee; Ralph A Dean
'PACLIMS': a component LIM system for high-throughput functional genomic analysis.
BMC bioinformatics 2005;6():94.
2004: Joachim Messing; Arvind K Bharti; Wojciech M Karlowski; Heidrun Gundlach; Hye Ran Kim; Yeisoo Yu; Fusheng Wei; Galina Fuks; Carol Soderlund; Klaus F X Mayer; Rod A Wing
Sequence composition and genome organization of maize.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(40):14349-54.
2004: Jack Gardiner; Steven Schroeder; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Michele Morgante; Tim Landewe; Kevin Fengler; Francisco Useche; Michael Hanafey; Scott Tingey; Hugh Chou; Rod A Wing; Carol Soderlund; Edward H Coe
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization.
Plant physiology 2004;134(4):1317-26.
2003: Friedrich W Engler; James Hatfield; William Nelson; Carol Soderlund
Locating sequence on FPC maps and selecting a minimal tiling path.
Genome research 2003;13(9):2152-63.
2002: Young-Sun Yim; Georgia L Davis; Ngozi A Duru; Theresa A Musket; Eric W Linton; Joachim Messing; Michael D McMullen; Carol Soderlund; Mary L Polacco; Jack M Gardiner; Edward H Coe
Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization.
Plant physiology 2002;130(4):1686-96.
2002: Karen Cone; Michael D McMullen; Irie Vroh Bi; Georgia L Davis; Young-Sun Yim; Jack M Gardiner; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Steve G Schroeder; Seth A Havermann; John E Bowers; Andrew H Paterson; Carol Soderlund; Friedrich W Engler; Rod A Wing; Edward H Coe
Genetic, physical, and informatics resources for maize. On the road to an integrated map.
Plant physiology 2002;130(4):1598-605.
2002: Edward H Coe; Karen Cone; Michael D McMullen; Su-Shing Chen; Georgia Davis; Jack Gardiner; Emmanuel Liscum; Mary L Polacco; Andrew Paterson; Hector Sanchez-Villeda; Carol Soderlund; Rod A Wing
Access to the maize genome: an integrated physical and genetic map.
Plant physiology 2002;128(1):9-12.