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Evgeni Sokurenko

Research Profile

Chemicals & Drugs

Living Beings

Escherichia coli

Physiology

Anatomy

Fimbriae, Bacterial

Concepts & Ideas

Phenomena

Genes & Molecular Sequences

Amino Acid Sequences

Co-author Network

Publications

TOP 3
Sujay Chattopadhyay; Sandip Paul; Fred Taub; Scott Weissman; Evgeni V Sokurenko
Microbial variome database: point mutations, adaptive or not, in bacterial core genomes.
Yang Liu; Lothar Esser; Gianluca Interlandi; Dagmara I Kisiela; Evgeni V Sokurenko; Veronika Tchesnokova; Wendy E Thomas; Di Xia; Stephen J Savarino
Tight Conformational Coupling between the Domains of the Enterotoxigenic Escherichia coli Fimbrial Adhesin CfaE Regulates Binding State Transition.
Sujay Chattopadhyay; Daniel E Dykhuizen; Sandip Paul; Evgeni V Sokurenko
Tracking recent adaptive evolution in microbial species using TimeZone.

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All Publications

2013: Sujay Chattopadhyay; Sandip Paul; Fred Taub; Scott Weissman; Evgeni V Sokurenko
Microbial variome database: point mutations, adaptive or not, in bacterial core genomes.
Molecular biology and evolution 2013;30(6):1465-70.
2013: Yang Liu; Lothar Esser; Gianluca Interlandi; Dagmara I Kisiela; Evgeni V Sokurenko; Veronika Tchesnokova; Wendy E Thomas; Di Xia; Stephen J Savarino
Tight Conformational Coupling between the Domains of the Enterotoxigenic Escherichia coli Fimbrial Adhesin CfaE Regulates Binding State Transition.
The Journal of biological chemistry 2013;288(14):9993-10001.
2013: Sujay Chattopadhyay; Daniel E Dykhuizen; Sandip Paul; Evgeni V Sokurenko
Tracking recent adaptive evolution in microbial species using TimeZone.
Nature protocols 2013;8(4):652-65.
2013: James R Johnson; Brian Johnston; Ajit P Limaye; Marie-Hélène Nicolas-Chanoine; Joanne Platell; Lance B Price; Xuan Qin; Kim Riddell; Pacita L Roberts; Ari Robicsek; Peggy Rogers; Delia Scholes; Maliha Aziz; Mariya Billig; Susan Butler-Wu; Sujay Chattopadhyay; Connie Clabots; Brad T Cookson; Chitrita DebRoy; Ferric C Fang; Glen Hansen; David C Hooper; Veronika Tchesnokova; Darren J Trott; Carl Urban; Scott Weissman; George Zhanel; Evgeni V Sokurenko
Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli.
The Journal of infectious diseases 2013;207(6):919-28.
2013: Dagmara I Kisiela; Irena Medenica; Sandip Paul; Sujay Chattopadhyay; Steven Clegg; Veronika Tchesnokova; Scott Weissman; Evgeni V Sokurenko
Evolutionary analysis points to divergent physiological roles of type 1 fimbriae in Salmonella and Escherichia coli.
mBio 2013;4(2):.
2013: Nicolas Dreux; Corinne Gower-Rousseau; Dagmara Kisiela; Margarita Martinez-Medina; Alexander Mellmann; Christel Neut; Evgeni V Sokurenko; Maria Billig; Richard Bonnet; Sujay Chattopadhyay; Jean-Frédéric Colombel; Arlette Darfeuille-Michaud; Jérémy Denizot; Nicolas Barnich
Point mutations in FimH adhesin of Crohn's disease-associated adherent-invasive Escherichia coli enhance intestinal inflammatory response.
PLoS pathogens 2013;9(1):e1003141.
2013: Sandip Paul; Lance B Price; Veronika Tchesnokova; Mariya Billig; Sujay Chattopadhyay; James R Johnson; Elena V Linardopoulou; Evgeni V Sokurenko
Role of homologous recombination in adaptive diversification of extraintestinal Escherichia coli.
Journal of bacteriology 2013;195(2):231-42.
2012: Sujay Chattopadhyay; Dagmara I Kisiela; Elena V Linardopoulou; Sandip Paul; Evgeni V Sokurenko
Convergent molecular evolution of genomic cores in Salmonella enterica and Escherichia coli.
Journal of bacteriology 2012;194(18):5002-11.
2012: Sujay Chattopadhyay; Kathleen Dori; Dagmara I Kisiela; Annette L McVeigh; Armando Navarro; Evgeni V Sokurenko; Veronika Tchesnokova; Stephen J Savarino
Adaptive evolution of class 5 fimbrial genes in enterotoxigenic Escherichia coli and its functional consequences.
The Journal of biological chemistry 2012;287(9):6150-8.
2012: Lorenzo Giacani; Brendan M Jeffrey; Hoavan T Le; Sheila A Lukehart; Barbara J Molini; Arturo Centurion-Lara; Sujay Chattopadhyay; Evgeni V Sokurenko; Daniel D Rockey
Footprint of positive selection in Treponema pallidum subsp. pallidum genome sequences suggests adaptive microevolution of the syphilis pathogen.
PLoS neglected tropical diseases 2012;6(6):e1698.
2012: Dagmara I Kisiela; Jeremy J Kramer; Emily W Lankau; Stephen J Libby; Roderick I Mackie; Mansour Samadpour; Viktoriya Beskhlebnaya; Sujay Chattopadhyay; Steven Clegg; Ferric C Fang; Krzysztof Grzymajlo; Joyce E Karlinsey; Veronika Tchesnokova; Maciej Ugorski; Evgeni V Sokurenko
Evolution of Salmonella enterica virulence via point mutations in the fimbrial adhesin.
PLoS pathogens 2012;8(6):e1002733.
2011: Dagmara I Kisiela; Jeremy J Kramer; Pavel Aprikian; Steven Clegg; Veronika Tchesnokova; Vladimir Yarov-Yarovoy; Evgeni V Sokurenko
Allosteric catch bond properties of the FimH adhesin from Salmonella enterica serovar Typhimurium.
The Journal of biological chemistry 2011;286(44):38136-47.
2011: Brett E Dwyer; Dagmara Kisiela; Karly L Newton; Evgeni V Sokurenko; Steven Clegg
Single nucleotide polypmorphisms of fimH associated with adherence and biofilm formation by serovars of Salmonella enterica.
Microbiology (Reading, England) 2011;157(Pt 11):3162-71.
2011: Yuriy V Pereverzev; Eugenia Prezhdo; Evgeni V Sokurenko
The two-pathway model of the biological catch-bond as a limit of the allosteric model.
Biophysical journal 2011;101(8):2026-36.
2011: Veronika Tchesnokova; Wendy Thomas; Pavel Aprikian; Sarah Gowey; Dagmara Kisiela; Natalia Korotkova; Evgeni V Sokurenko
Type 1 fimbrial adhesin FimH elicits an immune response that enhances cell adhesion of Escherichia coli.
Infection and immunity 2011;79(10):3895-904.
2011: Pavel Aprikian; Esther Bullitt; Gianluca Interlandi; Brian A Kidd; Isolde Le Trong; Ronald E Stenkamp; Veronika Tchesnokova; Wendy Thomas; Matt J Whitfield; Olga Yakovenko; Evgeni V Sokurenko
The bacterial fimbrial tip acts as a mechanical force sensor.
PLoS biology 2011;9(5):e1000617.
2010: Isolde Le Trong; Evgeni V Sokurenko; Pavel Aprikian; Brian A Kidd; Wendy E Thomas; Ronald E Stenkamp
Donor strand exchange and conformational changes during E. coli fimbrial formation.
Journal of structural biology 2010;172(3):380-8.
2010: Yuriy V Pereverzev; Oleg V Prezhdo; Evgeni V Sokurenko
Regulation of catch binding by allosteric transitions.
The journal of physical chemistry. B 2010;114(36):11866-74.
2010: Isolde Le Trong; Pavel Aprikian; Brian A Kidd; Manu Forero-Shelton; Veronika Tchesnokova; Ponni Rajagopal; Victoria Rodriguez; Gianluca Interlandi; Rachel E Klevit; Viola Vogel; Ronald E Stenkamp; Evgeni V Sokurenko; Wendy Thomas
Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting.
Cell 2010;141(4):645-55.
2010: Veronika Tchesnokova; Annette L McVeigh; Brian Kidd; Olga Yakovenko; Wendy Thomas; Evgeni V Sokurenko; Stephen J Savarino
Shear-enhanced binding of intestinal colonization factor antigen I of enterotoxigenic Escherichia coli.
Molecular microbiology 2010;76(2):489-502.
2009: Steen G Stahlhut; Veronika Tchesnokova; Carsten Struve; Scott Weissman; Sujay Chattopadhyay; Olga Yakovenko; Pavel Aprikian; Evgeni V Sokurenko; Karen A Krogfelt
Comparative structure-function analysis of mannose-specific FimH adhesins from Klebsiella pneumoniae and Escherichia coli.
Journal of bacteriology 2009;191(21):6592-601.
2009: Sujay Chattopadhyay; Rohinee N Paranjpye; Daniel E Dykhuizen; Evgeni V Sokurenko; Mark Strom
Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili.
Molecular biology and evolution 2009;26(10):2185-96.
2009: Sujay Chattopadhyay; Scott Weissman; Vladimir N Minin; Thomas A Russo; Daniel E Dykhuizen; Evgeni V Sokurenko
High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(30):12412-7.
2009: Yuriy V Pereverzev; Oleg V Prezhdo; Evgeni V Sokurenko
Allosteric role of the large-scale domain opening in biological catch-binding.
Physical review. E, Statistical, nonlinear, and soft matter physics 2009;79(5 Pt 1):051913.
2009: Steen G Stahlhut; Sujay Chattopadhyay; Carsten Struve; Scott J Weissman; Pavel Aprikian; Stephen J Libby; Ferric C Fang; Karen A Krogfelt; Evgeni V Sokurenko
Population variability of the FimH type 1 fimbrial adhesin in Klebsiella pneumoniae.
Journal of bacteriology 2009;191(6):1941-50.
2008: Evgeni V Sokurenko; Viola Vogel; Wendy Thomas
Catch-bond mechanism of force-enhanced adhesion: counterintuitive, elusive, but ... widespread?
Cell host & microbe 2008;4(4):314-23.
2008: Yuriy V Pereverzev; Oleg V Prezhdo; Evgeni V Sokurenko
Anomalously increased lifetimes of biological complexes at zero force due to the protein-water interface.
The journal of physical chemistry. B 2008;112(36):11440-5.
2008: Leah S Ronald; Olga Yakovenko; Nina Yazvenko; Sujay Chattopadhyay; Pavel Aprikian; Wendy Thomas; Evgeni V Sokurenko
Adaptive mutations in the signal peptide of the type 1 fimbrial adhesin of uropathogenic Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(31):10937-42.
2008: Lina M Nilsson; Wendy Thomas; Evgeni V Sokurenko; Viola Vogel
Beyond induced-fit receptor-ligand interactions: structural changes that can significantly extend bond lifetimes.
Structure (London, England : 1993) 2008;16(7):1047-58.
2008: Olga Yakovenko; Shivani Sharma; Manu Forero; Veronika Tchesnokova; Pavel Aprikian; Brian Kidd; Albert Mach; Viola Vogel; Evgeni V Sokurenko; Wendy Thomas
FimH forms catch bonds that are enhanced by mechanical force due to allosteric regulation.
The Journal of biological chemistry 2008;283(17):11596-605.
2008: Veronika Tchesnokova; Pavel Aprikian; Olga Yakovenko; Christopher N LaRock; Brian Kidd; Viola Vogel; Wendy Thomas; Evgeni V Sokurenko
Integrin-like allosteric properties of the catch bond-forming FimH adhesin of Escherichia coli.
The Journal of biological chemistry 2008;283(12):7823-33.
2008: Wendy Thomas; Viola Vogel; Evgeni V Sokurenko
Biophysics of catch bonds.
Annual review of biophysics 2008;37():399-416.
2007: OG Gómez-Duarte; Sujay Chattopadhyay; Scott Weissman; Jorge A. Giron; James B Kaper; Evgeni V Sokurenko
Genetic diversity of the gene cluster encoding longus, a type IV pilus of enterotoxigenic Escherichia coli.
Journal of bacteriology 2007;189(24):9145-9.
2007: Lina M Nilsson; Olga Yakovenko; Veronika Tchesnokova; Wendy Thomas; Mark A Schembri; Viola Vogel; Per Klemm; Evgeni V Sokurenko
The cysteine bond in the Escherichia coli FimH adhesin is critical for adhesion under flow conditions.
Molecular microbiology 2007;65(5):1158-69.
2007: Pavel Aprikian; Veronika Tchesnokova; Brian Kidd; Olga Yakovenko; Vladimir Yarov-Yarovoy; Elena Trinchina; Viola Vogel; Wendy Thomas; Evgeni V Sokurenko
Interdomain interaction in the FimH adhesin of Escherichia coli regulates the affinity to mannose.
The Journal of biological chemistry 2007;282(32):23437-46.
2007: Scott Weissman; Viktoriya Beskhlebnaya; Veronika Chesnokova; Sujay Chattopadhyay; Walter E Stamm; Thomas Hooton; Evgeni V Sokurenko
Differential stability and trade-off effects of pathoadaptive mutations in the Escherichia coli FimH adhesin.
Infection and immunity 2007;75(7):3548-55.
2007: Natalia Korotkova; Sujay Chattopadhyay; Tami A Tabata; Viktoriya Beskhlebnaya; Vladimir Vigdorovich; Brett K Kaiser; Roland K Strong; Daniel E Dykhuizen; Evgeni V Sokurenko; Steve L Moseley
Selection for functional diversity drives accumulation of point mutations in Dr adhesins of Escherichia coli.
Molecular microbiology 2007;64(1):180-94.
2007: Brett N Anderson; Albert M Ding; Lina M Nilsson; Kaoru Kusuma; Veronika Tchesnokova; Viola Vogel; Evgeni V Sokurenko; Wendy Thomas
Weak rolling adhesion enhances bacterial surface colonization.
Journal of bacteriology 2007;189(5):1794-802.
2007: Sujay Chattopadhyay; Michael Feldgarden; Scott Weissman; Daniel E Dykhuizen; Gerald van Belle; Evgeni V Sokurenko
Haplotype diversity in "source-sink" dynamics of Escherichia coli urovirulence.
Journal of molecular evolution 2007;64(2):204-14.
2007: Sujay Chattopadhyay; Daniel E Dykhuizen; Evgeni V Sokurenko
ZPS: visualization of recent adaptive evolution of proteins.
BMC bioinformatics 2007;8():187.
2006: Manu Forero; Olga Yakovenko; Evgeni V Sokurenko; Wendy Thomas; Viola Vogel
Uncoiling mechanics of Escherichia coli type I fimbriae are optimized for catch bonds.
PLoS biology 2006;4(9):e298.
2006: Evgeni V Sokurenko; Richard Gomulkiewicz; Daniel E Dykhuizen
Source-sink dynamics of virulence evolution.
Nature reviews. Microbiology 2006;4(7):548-55.
2006: Lina M Nilsson; Wendy Thomas; Elena Trintchina; Viola Vogel; Evgeni V Sokurenko
Catch bond-mediated adhesion without a shear threshold: trimannose versus monomannose interactions with the FimH adhesin of Escherichia coli.
The Journal of biological chemistry 2006;281(24):16656-63.
2006: Lina M Nilsson; Wendy Thomas; Evgeni V Sokurenko; Viola Vogel
Elevated shear stress protects Escherichia coli cells adhering to surfaces via catch bonds from detachment by soluble inhibitors.
Applied and environmental microbiology 2006;72(4):3005-10.
2006: Viktoriya Beskhlebnaya; E V Trinchina; P Aprikyan; Veronika Chesnokova; Evgeni V Sokurenko
Molecular genetic analysis of Escherichia coli type I adhesins.
Bulletin of experimental biology and medicine 2006;141(3):339-42.
2006: Scott Weissman; Sujay Chattopadhyay; Pavel Aprikian; Mana Obata Yasuoka; Yuliya Yarova-Yarovaya; Ann Stapleton; William Ba-Thein; Daniel E Dykhuizen; James R Johnson; Evgeni V Sokurenko
Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli.
Molecular microbiology 2006;59(3):975-88.
2006: Wendy Thomas; Manu Forero; Olga Yakovenko; Lina Nilsson; Paolo Vicini; Evgeni V Sokurenko; Viola Vogel
Catch-bond model derived from allostery explains force-activated bacterial adhesion.
Biophysical journal 2006;90(3):753-64.
2005: Yuriy V Pereverzev; Oleg V Prezhdo; Manu Forero; Evgeni V Sokurenko; Wendy Thomas
The two-pathway model for the catch-slip transition in biological adhesion.
Biophysical journal 2005;89(3):1446-54.
2005: Yuriy V Pereverzev; Oleg V Prezhdo; Wendy Thomas; Evgeni V Sokurenko
Distinctive features of the biological catch bond in the jump-ramp force regime predicted by the two-pathway model.
Physical review. E, Statistical, nonlinear, and soft matter physics 2005;72(1 Pt 1):010903.
2004: Wendy Thomas; Lina M Nilsson; Manu Forero; Evgeni V Sokurenko; Viola Vogel
Shear-dependent 'stick-and-roll' adhesion of type 1 fimbriated Escherichia coli.
Molecular microbiology 2004;53(5):1545-57.
2004: Evgeni V Sokurenko; Michael Feldgarden; Elena Trintchina; Scott Weissman; Serine Avagyan; Sujay Chattopadhyay; James R Johnson; Daniel E Dykhuizen
Selection footprint in the FimH adhesin shows pathoadaptive niche differentiation in Escherichia coli.
Molecular biology and evolution 2004;21(7):1373-83.
2003: Scott Weissman; Steve L Moseley; Daniel E Dykhuizen; Evgeni V Sokurenko
Enterobacterial adhesins and the case for studying SNPs in bacteria.
Trends in microbiology 2003;11(3):115-7.
2002: Cristina P Van Loy; Evgeni V Sokurenko; R Samudrala; Steve L Moseley
Identification of amino acids in the Dr adhesin required for binding to decay-accelerating factor.
Molecular microbiology 2002;45(2):439-52.
2002: Wendy Thomas; Elena Trintchina; Manu Forero; Viola Vogel; Evgeni V Sokurenko
Bacterial adhesion to target cells enhanced by shear force.
Cell 2002;109(7):913-23.
2002: Cristina P Van Loy; Evgeni V Sokurenko; Steve L Moseley
The major structural subunits of Dr and F1845 fimbriae are adhesins.
Infection and immunity 2002;70(4):1694-702.
2001: James R Johnson; Scott Weissman; Adam L Stell; Elena Trintchina; Daniel E Dykhuizen; Evgeni V Sokurenko
Clonal and pathotypic analysis of archetypal Escherichia coli cystitis isolate NU14.
The Journal of infectious diseases 2001;184(12):1556-65.
2001: Evgeni V Sokurenko; Veronika Tchesnokova; anthony yeung; Catherine A Oleykowski; Elena Trintchina; Kelly T Hughes; Rebecca A Rashid; J M Brint; Steve L Moseley; Stephen Lory
Detection of simple mutations and polymorphisms in large genomic regions.
Nucleic acids research 2001;29(22):E111.
2001: Evgeni V Sokurenko
Discovering the sweeping power of point mutations using a GIRAFF.
Trends in microbiology 2001;9(11):522-5.
2001: Evgeni V Sokurenko; Mark A Schembri; Elena Trintchina; Kristian Kjaergaard; David L Hasty; Per Klemm
Valency conversion in the type 1 fimbrial adhesin of Escherichia coli.
Molecular microbiology 2001;41(3):675-86.
2001: Mark A Schembri; Kristian Kjaergaard; Evgeni V Sokurenko; Per Klemm
Molecular characterization of the Escherichia coli FimH adhesin.
The Journal of infectious diseases 2001;183 Suppl 1():S28-31.
2000: Mark A Schembri; Evgeni V Sokurenko; Per Klemm
Functional flexibility of the FimH adhesin: insights from a random mutant library.
Infection and immunity 2000;68(5):2638-46.
1999: Evgeni V Sokurenko; David L Hasty; Daniel E Dykhuizen
Pathoadaptive mutations: gene loss and variation in bacterial pathogens.
Trends in microbiology 1999;7(5):191-5.
1998: Evgeni V Sokurenko; Veronika Chesnokova; Daniel E Dykhuizen; Itzhak Ofek; X R Wu; Karen A Krogfelt; Carsten Struve; Mark A Schembri; David L Hasty
Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(15):8922-6.
1997: Evgeni V Sokurenko; Veronika Chesnokova; R J Doyle; David L Hasty
Diversity of the Escherichia coli type 1 fimbrial lectin. Differential binding to mannosides and uroepithelial cells.
The Journal of biological chemistry 1997;272(28):17880-6.
1995: Evgeni V Sokurenko; Harry S Courtney; J Maslow; A Siitonen; David L Hasty
Quantitative differences in adhesiveness of type 1 fimbriated Escherichia coli due to structural differences in fimH genes.
Journal of bacteriology 1995;177(13):3680-6.
1995: Evgeni V Sokurenko; V A McMackin; David L Hasty
Bacterial adhesion measured by growth of adherent organisms.
Methods in enzymology 1995;253():519-28.
1995: Evgeni V Sokurenko; David L Hasty
Assay for adhesion of host cells to immobilized bacteria.
Methods in enzymology 1995;253():220-6.
1994: Evgeni V Sokurenko; Harry S Courtney; Dennis Ohman; P Klemm; David L Hasty
FimH family of type 1 fimbrial adhesins: functional heterogeneity due to minor sequence variations among fimH genes.
Journal of bacteriology 1994;176(3):748-55.
1992: Evgeni V Sokurenko; Harry S Courtney; Soman N Abraham; P Klemm; David L Hasty
Functional heterogeneity of type 1 fimbriae of Escherichia coli.
Infection and immunity 1992;60(11):4709-19.