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Dario Boffelli

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TOP 3
Joseph M Dhahbi; Noel Guerrero; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction.
Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
Dario Boffelli; David I K Martin
Epigenetic inheritance: a contributor to species differentiation?

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All Publications

2013: Joseph M Dhahbi; Noel Guerrero; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction.
Aging 2013;5(2):130-41.
2013: Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
BMC genomics 2013;14():298.
2012: Dario Boffelli; David I K Martin
Epigenetic inheritance: a contributor to species differentiation?
DNA and cell biology 2012;31 Suppl 1():S11-6.
2012: Joseph M Dhahbi; David I K Martin; Hani Atamna; Dario Boffelli; Stephen R Spindler
mRNA-Seq reveals complex patterns of gene regulation and expression in the mouse skeletal muscle transcriptome associated with calorie restriction.
Physiological genomics 2012;44(6):331-44.
2011: David I K Martin; Lior Pachter; Gary P Schroth; Meromit Singer; Lu Zhang; Joseph M Dhahbi; Guanxiong Mao; Dario Boffelli
Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states.
Genome research 2011;21(12):2049-57.
2011: Igor Lukashin; Simon Minovitsky; Pavel Novichkov; Alex R Paciorkowski; Song Yang; Dario Boffelli; Inna Dubchak
VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.
Bioinformatics (Oxford, England) 2011;27(18):2595-7.
2011: Frazer Meacham; Dario Boffelli; Joseph Dhahbi; David I K Martin; Meromit Singer; Lior Pachter
Identification and correction of systematic error in high-throughput sequence data.
BMC bioinformatics 2011;12():451.
2011: Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Wendy Magis; Stephen R Spindler; David I K Martin
Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence.
PloS one 2011;6(5):e20509.
2010: Meromit Singer; Dario Boffelli; Joseph Dhahbi; Alexander Schönhuth; Gary P Schroth; David I K Martin; Lior Pachter
MetMap enables genome-scale Methyltyping for determining methylation states in populations.
PLoS computational biology 2010;6(8):e1000888.
2008: Dario Boffelli
Phylogenetic shadowing: sequence comparisons of multiple primate species.
Methods in molecular biology (Clifton, N.J.) 2008;453():217-31.
2008: Dana C Crawford; Ze Peng; Jan-Fang Cheng; Dario Boffelli; Magdalena Ahearn; Dan Nguyen; Tristan Shaffer; Qian Yi; Robert Livingston; Mark J Rieder; Deborah A Nickerson
LPA and PLG sequence variation and kringle IV-2 copy number in two populations.
Human heredity 2008;66(4):199-209.
2007: Qian-fei Wang; Shyam Prabhakar; Sumita Chanan; Jan-Fang Cheng; Edward M Rubin; Dario Boffelli
Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons.
Genome biology 2007;8(1):R1.
2006: Tanja Woyke; Hanno Teeling; Natalia N Ivanova; Marcel Huntemann; Michael Richter; Frank Oliver Gloeckner; Dario Boffelli; Iain J Anderson; Kerrie W Barry; Harris J Shapiro; Ernest Szeto; Nikos Kyrpides; Marc Mussmann; Rudolf Amann; Claudia Bergin; Caroline Ruehland; Edward M Rubin; Nicole Dubilier
Symbiosis insights through metagenomic analysis of a microbial consortium.
Nature 2006;443(7114):950-5.
2006: Qian-fei Wang; Shyam Prabhakar; Qianben Wang; Alan M Moses; Sumita Chanan; Myles Brown; Michael B Eisen; Jan-Fang Cheng; Edward M Rubin; Dario Boffelli
Primate-specific evolution of an LDLR enhancer.
Genome biology 2006;7(8):R68.
2004: Dario Boffelli; Claire V Weer; Li Weng; Keith D Lewis; Malak Shoukry; Lior Pachter; David N Keys; Edward M Rubin
Intraspecies sequence comparisons for annotating genomes.
Genome research 2004;14(12):2406-11.
2004: Ivan Ovcharenko; Dario Boffelli; Gabriela G Loots
eShadow: a tool for comparing closely related sequences.
Genome research 2004;14(6):1191-8.
2004: Dario Boffelli; Marcelo A Nobrega; Edward M Rubin
Comparative genomics at the vertebrate extremes.
Nature reviews. Genetics 2004;5(6):456-65.
2004: Poupak Farahani; Sally Chiu; Christopher L Bowlus; Dario Boffelli; Eric Lee; Janis S Fisler; Ronald M Krauss; Craig H Warden
Obesity in BSB mice is correlated with expression of genes for iron homeostasis and leptin.
Obesity research 2004;12(2):191-204.
2004: Dario Boffelli; Jan-Fang Cheng; Edward M Rubin
Convergent evolution in primates and an insectivore.
Genomics 2004;83(1):19-23.
2003: Dario Boffelli; Jon McAuliffe; Dmitriy Ovcharenko; Keith D Lewis; Ivan Ovcharenko; Lior Pachter; Edward M Rubin
Phylogenetic shadowing of primate sequences to find functional regions of the human genome.
Science (New York, N.Y.) 2003;299(5611):1391-4.
2000: Y Zhu; M C Jong; Kelly A Frazer; E Gong; Ronald M Krauss; Jan-Fang Cheng; Dario Boffelli; Edward M Rubin
Genomic interval engineering of mice identifies a novel modulator of triglyceride production.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(3):1137-42.