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Jörg Soppa

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Jörg Soppa
Evolutionary advantages of polyploidy in halophilic archaea.
Ruth Heyer; Katharina Jaschinski; Angelika Jellen-Ritter; Julia Babski; Marcella Dörr; Jörg Soppa; Bettina Späth; Anita Marchfelder
High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.
Jan Philip Wurm; Ute Bahr; Marco Griese; Alexander Heckel; Martin Held; Michael Karas; Jörg Soppa; Jens Wöhnert
Identification of the enzyme responsible for N1-methylation of pseudouridine 54 in archaeal tRNAs.

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All Publications

2013: Jörg Soppa
Evolutionary advantages of polyploidy in halophilic archaea.
Biochemical Society transactions 2013;41(1):339-43.
2012: Ruth Heyer; Katharina Jaschinski; Angelika Jellen-Ritter; Julia Babski; Marcella Dörr; Jörg Soppa; Bettina Späth; Anita Marchfelder
High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.
RNA biology 2012;9(7):1011-8.
2012: Jan Philip Wurm; Ute Bahr; Marco Griese; Alexander Heckel; Martin Held; Michael Karas; Jörg Soppa; Jens Wöhnert
Identification of the enzyme responsible for N1-methylation of pseudouridine 54 in archaeal tRNAs.
RNA (New York, N.Y.) 2012;18(3):412-20.
2011: Marco Griese; Christian Lange; Jörg Soppa
Ploidy in cyanobacteria.
FEMS microbiology letters 2011;323(2):124-31.
2011: Julia Babski; Wolfgang R Hess; Angelika Jellen-Ritter; Anita Marchfelder; Brian Tjaden; Björn Voss; Jörg Soppa
Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii.
RNA biology 2011;8(5):806-16.
2011: Katharina Jantzer; Karolin Zerulla; Jörg Soppa
Phenotyping in the archaea: optimization of growth parameters and analysis of mutants of Haloferax volcanii.
FEMS microbiology letters 2011;322(2):123-30.
2011: Christian Lange; Karolin Zerulla; Sebastian Breuert; Jörg Soppa
Gene conversion results in the equalization of genome copies in the polyploid haloarchaeon Haloferax volcanii.
Molecular microbiology 2011;80(3):666-77.
2011: Catherina Hildenbrand; Tilmann Stock; Christian Lange; Michael Rother; Jörg Soppa
Genome copy numbers and gene conversion in methanogenic archaea.
Journal of bacteriology 2011;193(3):734-43.
2011: Vito Pecoraro; Karolin Zerulla; Christian Lange; Jörg Soppa
Quantification of ploidy in proteobacteria revealed the existence of monoploid, (mero-)oligoploid and polyploid species.
PloS one 2011;6(1):e16392.
2011: Susan Fischer; Juliane Benz; Bettina Späth; Angelika Jellen-Ritter; Ruth Heyer; Marcella Dörr; Lisa-Katharina Maier; Clemens Menzel-Hobeck; Matthias Lehr; Katharina Jantzer; Julia Babski; Jörg Soppa; Anita Marchfelder
Regulatory RNAs in Haloferax volcanii.
Biochemical Society transactions 2011;39(1):159-62.
2011: Jörg Soppa
Ploidy and gene conversion in Archaea.
Biochemical Society transactions 2011;39(1):150-4.
2010: Susan Fischer; Juliane Benz; Bettina Späth; Lisa-Katharina Maier; Julia Straub; Michaela Granzow; Monika Raabe; Henning Urlaub; Jan Hoffmann; Bernd Brutschy; Thorsten Allers; Jörg Soppa; Anita Marchfelder
The archaeal Lsm protein binds to small RNAs.
The Journal of biological chemistry 2010;285(45):34429-38.
2010: Marco Sisignano; Daniel Morbitzer; Jochem Gätgens; Marco Oldiges; Jörg Soppa
A 2-oxoacid dehydrogenase complex of Haloferax volcanii is essential for growth on isoleucine but not on other branched-chain amino acids.
Microbiology (Reading, England) 2010;156(Pt 2):521-9.
2010: Jörg Soppa
Protein acetylation in archaea, bacteria, and eukaryotes.
Archaea (Vancouver, B.C.) 2010;2010():.
2009: Ulrike Johnsen; Michael Dambeck; Henning Zaiss; Tobias Fuhrer; Jörg Soppa; Uwe Sauer; Peter Schönheit
D-xylose degradation pathway in the halophilic archaeon Haloferax volcanii.
The Journal of biological chemistry 2009;284(40):27290-303.
2009: Annette Kopitz; Jörg Soppa; Carsten Krejtschi; Karin Hauser
Differential stability of TATA box binding proteins from archaea with different optimal growth temperatures.
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 2009;73(5):799-804.
2009: Julia Straub; Mariam Brenneis; Angelika Jellen-Ritter; Ruth Heyer; Jörg Soppa; Anita Marchfelder
Small RNAs in haloarchaea: identification, differential expression and biological function.
RNA biology 2009;6(3):281-92.
2009: Oliver Hering; Mariam Brenneis; Jürgen Beer; Beatrix Suess; Jörg Soppa
A novel mechanism for translation initiation operates in haloarchaea.
Molecular microbiology 2009;71(6):1451-63.
2009: Jörg Soppa; Julia Straub; Mariam Brenneis; Angelika Jellen-Ritter; Ruth Heyer; Susan Fischer; Michaela Granzow; Björn Voss; Wolfgang Hess; Brian Tjaden; Anita Marchfelder
Small RNAs of the halophilic archaeon Haloferax volcanii.
Biochemical Society transactions 2009;37(Pt 1):133-6.
2009: Mariam Brenneis; Jörg Soppa
Regulation of translation in haloarchaea: 5'- and 3'-UTRs are essential and have to functionally interact in vivo.
PloS one 2009;4(2):e4484.
2008: M Hammelmann; Jörg Soppa
Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants.
Journal of microbiological methods 2008;75(2):201-4.
2008: Harald Huber; Jörg Soppa
Gene regulation and genome function in Archaea: a progress survey.
Archives of microbiology 2008;190(3):195-6.
2008: Jörg Soppa; A Baumann; M Brenneis; M Dambeck; O Hering; Christian Lange
Genomics and functional genomics with haloarchaea.
Archives of microbiology 2008;190(3):197-215.
2008: Michael Dambeck; Jörg Soppa
Characterization of a Haloferax volcanii member of the enolase superfamily: deletion mutant construction, expression analysis, and transcriptome comparison.
Archives of microbiology 2008;190(3):341-53.
2008: Friedhelm Pfeiffer; Stephan C Schuster; A Broicher; Michaela Falb; Peter Palm; K Rodewald; Andreas Ruepp; Jörg Soppa; Jörg Tittor; Dieter Oesterhelt
Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1.
Genomics 2008;91(4):335-46.
2008: Melanie Zaparty; Alexander Zaigler; Claudia Stamme; Jörg Soppa; Reinhard Hensel; Bettina Siebers
DNA microarray analysis of central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic crenarchaeum Thermoproteus tenax.
Journal of bacteriology 2008;190(6):2231-8.
2007: Mariam Brenneis; Oliver Hering; Christian Lange; Jörg Soppa
Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea.
PLoS genetics 2007;3(12):e229.
2007: Andrew Large; Claudia Stamme; Christian Lange; Zhenhong Duan; Thorsten Allers; Jörg Soppa; Peter Lund
Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene.
Molecular microbiology 2007;66(5):1092-106.
2007: Jan van Ooyen; Jörg Soppa
Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: expression, deletion mutants and evolution.
Microbiology (Reading, England) 2007;153(Pt 10):3303-13.
2007: Sonja Hundt; Alexander Zaigler; Christian Lange; Jörg Soppa; Gabriele Klug
Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.
Journal of bacteriology 2007;189(19):6936-44.
2007: Christian Lange; Alexander Zaigler; Mathias Hammelmann; Jens Twellmeyer; Günter Raddatz; Stephan C Schuster; Dieter Oesterhelt; Jörg Soppa
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea.
BMC genomics 2007;8():415.
2007: Jens Twellmeyer; Andy Wende; Jan Wolfertz; Friedhelm Pfeiffer; Markus Panhuysen; Alexander Zaigler; Jörg Soppa; Gerhard Welzl; Dieter Oesterhelt
Microarray analysis in the archaeon Halobacterium salinarum strain R1.
PloS one 2007;2(10):e1064.
2007: Anke Baumann; Christian Lange; Jörg Soppa
Transcriptome changes and cAMP oscillations in an archaeal cell cycle.
BMC cell biology 2007;8():21.
2006: Jörg Soppa
From genomes to function: haloarchaea as model organisms.
Microbiology (Reading, England) 2006;152(Pt 3):585-90.
2006: Sebastian Breuert; Thorsten Allers; Gabi Spohn; Jörg Soppa
Regulated polyploidy in halophilic archaea.
PloS one 2006;1():e92.
2005: Jörg Soppa
From replication to cultivation: hot news from Haloarchaea.
Current opinion in microbiology 2005;8(6):737-44.
2003: Alexander Zaigler; Stephan C Schuster; Jörg Soppa
Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.
Molecular microbiology 2003;48(4):1089-105.
2002: Ute Herrmann; Jörg Soppa
Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum.
Molecular microbiology 2002;46(2):395-409.
2002: Jörg Soppa; Kazuo Kobayashi; Marie-Françoise Noirot-Gros; Dieter Oesterhelt; S Dusko Ehrlich; Etienne Dervyn; Naotake Ogasawara; Shigeki Moriya
Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB.
Molecular microbiology 2002;45(1):59-71.
2002: Judita Mascarenhas; Jörg Soppa; Alex Strunnikov; Peter L Graumann
Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein.
The EMBO journal 2002;21(12):3108-18.
2002: Christian Wanner; Jörg Soppa
Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii.
Journal of bacteriology 2002;184(11):3114-21.
2001: Jörg Soppa
Basal and regulated transcription in archaea.
Advances in applied microbiology 2001;50():171-217.
1999: C Wanner; Jörg Soppa
Genetic identification of three ABC transporters as essential elements for nitrate respiration in Haloferax volcanii.
Genetics 1999;152(4):1417-28.
1999: Jörg Soppa
Transcription initiation in Archaea: facts, factors and future aspects.
Molecular microbiology 1999;31(5):1295-305.
1999: N Patenge; Jörg Soppa
Extensive proteolysis inhibits high-level production of eukaryal G protein-coupled receptors in the archaeon Haloferax volcanii.
FEMS microbiology letters 1999;171(1):27-35.
1998: A Ruepp; G Wanner; Jörg Soppa
A 71-kDa protein from Halobacterium salinarium belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure.
Archives of microbiology 1998;169(1):1-9.
1997: Jörg Soppa; T A Link
The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation.
European journal of biochemistry / FEBS 1997;249(1):318-24.
1996: A Ruepp; Jörg Soppa
Fermentative arginine degradation in Halobacterium salinarium (formerly Halobacterium halobium): genes, gene products, and transcripts of the arcRACB gene cluster.
Journal of bacteriology 1996;178(16):4942-7.
1996: S Danner; Jörg Soppa
Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection.
Molecular microbiology 1996;19(6):1265-76.
1995: A Ruepp; H N Müller; Friedrich Lottspeich; Jörg Soppa
Catabolic ornithine transcarbamylase of Halobacterium halobium (salinarium): purification, characterization, sequence determination, and evolution.
Journal of bacteriology 1995;177(5):1129-36.
1994: Jörg Soppa
Two hypotheses--one answer. Sequence comparison does not support an evolutionary link between halobacterial retinal proteins including bacteriorhodopsin and eukaryotic G-protein-coupled receptors.
FEBS letters 1994;342(1):7-11.
1993: Jörg Soppa; J Duschl; D Oesterhelt
Bacterioopsin, haloopsin, and sensory opsin I of the halobacterial isolate Halobacterium sp. strain SG1: three new members of a growing family.
Journal of bacteriology 1993;175(9):2720-6.
1989: Jörg Soppa; D Oesterhelt
Bacteriorhodopsin mutants of Halobacterium sp. GRB. I. The 5-bromo-2'-deoxyuridine selection as a method to isolate point mutants in halobacteria.
The Journal of biological chemistry 1989;264(22):13043-8.
1989: Jörg Soppa; J Otomo; J Straub; Jörg Tittor; S Meessen; D Oesterhelt
Bacteriorhodopsin mutants of Halobacterium sp. GRB. II. Characterization of mutants.
The Journal of biological chemistry 1989;264(22):13049-56.
1989: Jörg Soppa; D Oesterhelt
Halobacterium sp. GRB: a species to work with!?
Canadian journal of microbiology 1989;35(1):205-9.