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Jim Spain

Research Profile

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Pseudomonas

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Publications

TOP 3
Nicholas V Coleman; Alex Copeland; Eileen Dalin; Tijana Glavina Del Rio; John C Detter; Lynne A Goodwin; James G Gossett; Nancy M Hammon; Shunsheng Han; Loren J Hauser; Sanjay Israni; Edwin Kim; Nikolaos Kyrpides; Miriam L Land; Alla Lapidus; Frank W Larimer; Susan Lucas; Sam Pitluck; Paul Richardson; Jeremy Schmutz; Jim C Spain; Roxanne Tapia; Sue Thompson; Hope N Tice; Neil L Wilson; Kerrie Barry; Thomas S Brettin; David C Bruce; Timothy E Mattes
Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.
Jong-In Han; Hong-Kyu Choi; Seung-Won Lee; Paul M Orwin; Jina Kim; Sarah L Laroe; Tae-Gyu Kim; Jennifer O'Neil; Jared R Leadbetter; Sang Yup Lee; Cheol-Goo Hur; Jim C Spain; Galina Ovchinnikova; Lynne Goodwin; Cliff Han
Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.
Lorena Betancor; Heather R Luckarift; Jae H Seo; Oliver Brand; Jim C Spain
Three-dimensional immobilization of beta-galactosidase on a silicon surface.

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All Publications

2011: Nicholas V Coleman; Alex Copeland; Eileen Dalin; Tijana Glavina Del Rio; John C Detter; Lynne A Goodwin; James G Gossett; Nancy M Hammon; Shunsheng Han; Loren J Hauser; Sanjay Israni; Edwin Kim; Nikolaos Kyrpides; Miriam L Land; Alla Lapidus; Frank W Larimer; Susan Lucas; Sam Pitluck; Paul Richardson; Jeremy Schmutz; Jim C Spain; Roxanne Tapia; Sue Thompson; Hope N Tice; Neil L Wilson; Kerrie Barry; Thomas S Brettin; David C Bruce; Timothy E Mattes
Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.
Journal of bacteriology 2011;193(13):3399-400.
2011: Jong-In Han; Hong-Kyu Choi; Seung-Won Lee; Paul M Orwin; Jina Kim; Sarah L Laroe; Tae-Gyu Kim; Jennifer O'Neil; Jared R Leadbetter; Sang Yup Lee; Cheol-Goo Hur; Jim C Spain; Galina Ovchinnikova; Lynne Goodwin; Cliff Han
Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.
Journal of bacteriology 2011;193(5):1183-90.
2008: Lorena Betancor; Heather R Luckarift; Jae H Seo; Oliver Brand; Jim C Spain
Three-dimensional immobilization of beta-galactosidase on a silicon surface.
Biotechnology and bioengineering 2008;99(2):261-7.
2007: Heather R Luckarift; Roby Greenwald; Mike H Bergin; Jim C Spain; Glenn R Johnson
Biosensor system for continuous monitoring of organophosphate aerosols.
Biosensors & bioelectronics 2007;23(3):400-6.
2007: Heather R Luckarift; Bosung S Ku; Jonathan S Dordick; Jim C Spain
Silica-immobilized enzymes for multi-step synthesis in microfluidic devices.
Biotechnology and bioengineering 2007;98(3):701-5.
2007: Timothy E Mattes; Nicholas V Coleman; Adina S Chuang; Andrea J Rogers; Jim C Spain; James M Gossett
Mechanism controlling the extended lag period associated with vinyl chloride starvation in Nocardioides sp. strain JS614.
Archives of microbiology 2007;187(3):217-26.
2007: Zhongqi He; Rebecca E Parales; Jim C Spain; Glenn R Johnson
Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication.
Journal of industrial microbiology & biotechnology 2007;34(2):99-104.
2006: Heather R Luckarift; Glenn R Johnson; Jim C Spain
Silica-immobilized enzyme reactors; application to cholinesterase-inhibition studies.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2006;843(2):310-6.
2006: Lorena Betancor; Cécile Berne; Heather R Luckarift; Jim C Spain
Coimmobilization of a redox enzyme and a cofactor regeneration system.
Chemical communications (Cambridge, England) 2006;(34):3640-2.
2006: Cécile Berne; Lorena Betancor; Heather R Luckarift; Jim C Spain
Application of a microfluidic reactor for screening cancer prodrug activation using silica-immobilized nitrobenzene nitroreductase.
Biomacromolecules 2006;7(9):2631-6.
2006: Heather R Luckarift; Matthew B Dickerson; Kenneth H Sandhage; Jim C Spain
Rapid, room-temperature synthesis of antibacterial bionanocomposites of lysozyme with amorphous silica or titania.
Small (Weinheim an der Bergstrasse, Germany) 2006;2(5):640-3.
2006: Lloyd J Nadeau; Jim C Spain; Ramamurthi Kannan; Loon-Seng Tan
Conversion of 2-(4-carboxyphenyl)-6-nitrobenzothiazole to 4-(6-amino-5-hydroxybenzothiazol-2-yl)benzoic acid by a recombinant E. coli strain.
Chemical communications (Cambridge, England) 2006;(5):564-5.
2006: Shirley F Nishino; Jim C Spain
Biodegradation of 3-nitrotyrosine by Burkholderia sp. strain JS165 and Variovorax paradoxus JS171.
Applied and environmental microbiology 2006;72(2):1040-4.
2005: Diane Fournier; Sandra Trott; Jalal Hawari; Jim C Spain
Metabolism of the aliphatic nitramine 4-nitro-2,4-diazabutanal by Methylobacterium sp. strain JS178.
Applied and environmental microbiology 2005;71(8):4199-202.
2005: Timothy E Mattes; Nicholas V Coleman; Jim C Spain; James M Gossett
Physiological and molecular genetic analyses of vinyl chloride and ethene biodegradation in Nocardioides sp. strain JS614.
Archives of microbiology 2005;183(2):95-106.
2005: Heather R Luckarift; Lloyd J Nadeau; Jim C Spain
Continuous synthesis of aminophenols from nitroaromatic compounds by combination of metal and biocatalyst.
Chemical communications (Cambridge, England) 2005;(3):383-4.
2004: Heather R Luckarift; Glenn R Johnson; Jim C Spain
Biosynthesis of hydroxydiphenylacetylene by regiospecific monooxygenation.
Chemical communications (Cambridge, England) 2004;(21):2402-3.
2004: Rajesh Naik; Melanie Tomczak; Heather R Luckarift; Jim C Spain; Morley O Stone
Entrapment of enzymes and nanoparticles using biomimetically synthesized silica.
Chemical communications (Cambridge, England) 2004;(15):1684-5.
2004: Bharat Bhushan; Annamaria Halasz; Jim C Spain; Jalal Hawari
Initial reaction(s) in biotransformation of CL-20 is catalyzed by salicylate 1-monooxygenase from Pseudomonas sp. strain ATCC 29352.
Applied and environmental microbiology 2004;70(7):4040-7.
2004: Thomas J Fleischmann; Karen C Walker; Jim C Spain; Joseph B Hughes; A Morrie Craig
Anaerobic transformation of 2,4,6-TNT by bovine ruminal microbes.
Biochemical and biophysical research communications 2004;314(4):957-63.
2004: Diane Fournier; Annamaria Halasz; Jim C Spain; Ronald J Spanggord; Jeffrey C Bottaro; Jalal Hawari
Biodegradation of the hexahydro-1,3,5-trinitro-1,3,5-triazine ring cleavage product 4-nitro-2,4-diazabutanal by Phanerochaete chrysosporium.
Applied and environmental microbiology 2004;70(2):1123-8.
2004: Heather R Luckarift; Jim C Spain; Rajesh Naik; Morley O Stone
Enzyme immobilization in a biomimetic silica support.
Nature biotechnology 2004;22(2):211-3.
2003: Venkateswarlu Kadiyala; Lloyd J Nadeau; Jim C Spain
Construction of Escherichia coli strains for conversion of nitroacetophenones to ortho-aminophenols.
Applied and environmental microbiology 2003;69(11):6520-6.
2003: Nicholas V Coleman; Jim C Spain
Distribution of the coenzyme M pathway of epoxide metabolism among ethene- and vinyl chloride-degrading Mycobacterium strains.
Applied and environmental microbiology 2003;69(10):6041-6.
2003: Bharat Bhushan; Louise Paquet; Jim C Spain; Jalal Hawari
Biotransformation of 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane (CL-20) by denitrifying Pseudomonas sp. strain FA1.
Applied and environmental microbiology 2003;69(9):5216-21.
2003: Nicholas V Coleman; Jim C Spain
Epoxyalkane: coenzyme M transferase in the ethene and vinyl chloride biodegradation pathways of mycobacterium strain JS60.
Journal of bacteriology 2003;185(18):5536-45.
2003: John D Fortner; Chunlong Zhang; Jim C Spain; Joseph B Hughes
Soil column evaluation of factors controlling biodegradation of DNT in the vadose zone.
Environmental science & technology 2003;37(15):3382-91.
2003: Jim C Spain; Shirley F Nishino; Bernard Witholt; Loon-Seng Tan; Wouter A Duetz
Production of 6-phenylacetylene picolinic acid from diphenylacetylene by a toluene-degrading Acinetobacter strain.
Applied and environmental microbiology 2003;69(7):4037-42.
2003: Bharat Bhushan; Louise Paquet; Annamaria Halasz; Jim C Spain; Jalal Hawari
Mechanism of xanthine oxidase catalyzed biotransformation of HMX under anaerobic conditions.
Biochemical and biophysical research communications 2003;306(2):509-15.
2003: Lloyd J Nadeau; Zhongqi He; Jim C Spain
Bacterial conversion of hydroxylamino aromatic compounds by both lyase and mutase enzymes involves intramolecular transfer of hydroxyl groups.
Applied and environmental microbiology 2003;69(5):2786-93.
2003: Sandra Trott; Shirley F Nishino; Jalal Hawari; Jim C Spain
Biodegradation of the nitramine explosive CL-20.
Applied and environmental microbiology 2003;69(3):1871-4.
2003: Bharat Bhushan; Sandra Trott; Jim C Spain; Annamaria Halasz; Louise Paquet; Jalal Hawari
Biotransformation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) by a rabbit liver cytochrome P450: insight into the mechanism of RDX biodegradation by Rhodococcus sp. strain DN22.
Applied and environmental microbiology 2003;69(3):1347-51.
2002: Nicholas V Coleman; Timothy E Mattes; James M Gossett; Jim C Spain
Phylogenetic and kinetic diversity of aerobic vinyl chloride-assimilating bacteria from contaminated sites.
Applied and environmental microbiology 2002;68(12):6162-71.
2002: Bharat Bhushan; Annamaria Halasz; Jim C Spain; Jalal Hawari
Diaphorase catalyzed biotransformation of RDX via N-denitration mechanism.
Biochemical and biophysical research communications 2002;296(4):779-84.
2002: Bharat Bhushan; Annamaria Halasz; Jim C Spain; Sonia Thiboutot; Guy Ampleman; Jalal Hawari
Biotransformation of hexahydro-1,3,5-trinitro-1,3,5-tiazine catalyzed by a NAD(P)H: nitrate oxidoreductase from Aspergillus niger.
Environmental science & technology 2002;36(14):3104-8.
2002: Nicholas V Coleman; Timothy E Mattes; James M Gossett; Jim C Spain
Biodegradation of cis-dichloroethene as the sole carbon source by a beta-proteobacterium.
Applied and environmental microbiology 2002;68(6):2726-30.
2002: Annamaria Halasz; Jim C Spain; Louise Paquet; Chantale Beaulieu; Jalal Hawari
Insights into the formation and degradation mechanisms of methylenedinitramine during the incubation of RDX with anaerobic sludge.
Environmental science & technology 2002;36(4):633-8.
2002: Daniel J Lessner; Glenn R Johnson; Rebecca E Parales; Jim C Spain; David T Gibson
Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765.
Applied and environmental microbiology 2002;68(2):634-41.
2002: Nicholas V Coleman; Jim C Spain; Trevor Duxbury
Evidence that RDX biodegradation by Rhodococcus strain DN22 is plasmid-borne and involves a cytochrome p-450.
Journal of applied microbiology 2002;93(3):463-72.
2002: Diane Fournier; Annamaria Halasz; Jim C Spain; Petr Fiurasek; Jalal Hawari
Determination of key metabolites during biodegradation of hexahydro-1,3,5-trinitro-1,3,5-triazine with Rhodococcus sp. strain DN22.
Applied and environmental microbiology 2002;68(1):166-72.
2001: G R Johnson; Barth Smets; Jim C Spain
Oxidative transformation of aminodinitrotoluene isomers by multicomponent dioxygenases.
Applied and environmental microbiology 2001;67(12):5460-6.
2001: Chunlong Zhang; Rebecca C Daprato; S F Nishino; Jim C Spain; Joseph B Hughes
Remediation of dinitrotoluene contaminated soils from former ammunition plants: soil washing efficiency and effective process monitoring in bioslurry reactors.
Journal of hazardous materials 2001;87(1-3):139-54.
2000: Zhongqi He; Jim C Spain
Reactions involved in the lower pathway for degradation of 4-nitrotoluene by Mycobacterium strain HL 4-NT-1.
Applied and environmental microbiology 2000;66(7):3010-5.
2000: JK Davis; G C Paoli; Zhongqi He; Lloyd J Nadeau; C C Somerville; Jim C Spain
Sequence analysis and initial characterization of two isozymes of hydroxylaminobenzene mutase from Pseudomonas pseudoalcaligenes JS45.
Applied and environmental microbiology 2000;66(7):2965-71.
2000: Shirley F Nishino; G C Paoli; Jim C Spain
Aerobic degradation of dinitrotoluenes and pathway for bacterial degradation of 2,6-dinitrotoluene.
Applied and environmental microbiology 2000;66(5):2139-47.
2000: Zhongqi He; Lloyd J Nadeau; Jim C Spain
Characterization of hydroxylaminobenzene mutase from pNBZ139 cloned from Pseudomonas pseudoalcaligenes JS45. A highly associated SDS-stable enzyme catalyzing an intramolecular transfer of hydroxy groups.
European journal of biochemistry / FEBS 2000;267(4):1110-6.
1999: JK Davis; Zhongqi He; C C Somerville; Jim C Spain
Genetic and biochemical comparison of 2-aminophenol 1,6-dioxygenase of Pseudomonas pseudoalcaligenes JS45 to meta-cleavage dioxygenases: divergent evolution of 2-aminophenol meta-cleavage pathway.
Archives of microbiology 1999;172(5):330-9.
1999: Barth Smets; R Guy Riefler; U Lendenmann; Jim C Spain
Kinetic analysis of simultaneous 2,4-dinitrotoluene (DNT) and 2, 6-DNT biodegradation in an aerobic fluidized-bed biofilm reactor.
Biotechnology and bioengineering 1999;63(6):642-53.
1999: B E Haigler; G R Johnson; W C Suen; Jim C Spain
Biochemical and genetic evidence for meta-ring cleavage of 2,4, 5-trihydroxytoluene in Burkholderia sp. strain DNT.
Journal of bacteriology 1999;181(3):965-72.
1998: Lloyd J Nadeau; G S Sayler; Jim C Spain
Oxidation of 1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) by Alcaligenes eutrophus A5.
Archives of microbiology 1998;171(1):44-9.
1998: Zhongqi He; JK Davis; Jim C Spain
Purification, characterization, and sequence analysis of 2-aminomuconic 6-semialdehyde dehydrogenase from Pseudomonas pseudoalcaligenes JS45.
Journal of bacteriology 1998;180(17):4591-5.
1998: V Kadiyala; Jim C Spain
A two-component monooxygenase catalyzes both the hydroxylation of p-nitrophenol and the oxidative release of nitrite from 4-nitrocatechol in Bacillus sphaericus JS905.
Applied and environmental microbiology 1998;64(7):2479-84.
1998: Zhongqi He; Jim C Spain
A novel 2-aminomuconate deaminase in the nitrobenzene degradation pathway of Pseudomonas pseudoalcaligenes JS45.
Journal of bacteriology 1998;180(9):2502-6.
1998: Zhongqi He; Jim C Spain
Studies of the Catabolic Pathway of Degradation of Nitrobenzene by Pseudomonas pseudoalcaligenes JS45: Removal of the Amino Group from 2-Aminomuconic Semialdehyde.
Applied and environmental microbiology 1998;64(3):1166.
1997: Zhongqi He; Jim C Spain
Studies of the catabolic pathway of degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45: removal of the amino group from 2-aminomuconic semialdehyde.
Applied and environmental microbiology 1997;63(12):4839-43.
1996: B E Haigler; W C Suen; Jim C Spain
Purification and sequence analysis of 4-methyl-5-nitrocatechol oxygenase from Burkholderia sp. strain DNT.
Journal of bacteriology 1996;178(20):6019-24.
1996: W C Suen; B E Haigler; Jim C Spain
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.
Journal of bacteriology 1996;178(16):4926-34.
1996: M M Shah; Jim C Spain
Elimination of nitrite from the explosive 2,4,6-trinitrophenylmethylnitramine (tetryl) catalyzed by ferredoxin NADP oxidoreductase from spinach.
Biochemical and biophysical research communications 1996;220(3):563-8.
1995: C C Somerville; S F Nishino; Jim C Spain
Purification and characterization of nitrobenzene nitroreductase from Pseudomonas pseudoalcaligenes JS45.
Journal of bacteriology 1995;177(13):3837-42.
1995: L J Nadeau; Jim C Spain
Bacterial degradation of m-nitrobenzoic acid.
Applied and environmental microbiology 1995;61(2):840-3.
1994: B E Haigler; W H Wallace; Jim C Spain
Biodegradation of 2-nitrotoluene by Pseudomonas sp. strain JS42.
Applied and environmental microbiology 1994;60(9):3466-9.
1994: R K Jain; J H Dreisbach; Jim C Spain
Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp.
Applied and environmental microbiology 1994;60(8):3030-2.
1994: B E Haigler; S F Nishino; Jim C Spain
Biodegradation of 4-methyl-5-nitrocatechol by Pseudomonas sp. strain DNT.
Journal of bacteriology 1994;176(11):3433-7.
1993: S F Nishino; Jim C Spain
Degradation of nitrobenzene by a Pseudomonas pseudoalcaligenes.
Applied and environmental microbiology 1993;59(8):2520-5.
1993: B E Haigler; Jim C Spain
Biodegradation of 4-nitrotoluene by Pseudomonas sp. strain 4NT.
Applied and environmental microbiology 1993;59(7):2239-43.
1993: W C Suen; Jim C Spain
Cloning and characterization of Pseudomonas sp. strain DNT genes for 2,4-dinitrotoluene degradation.
Journal of bacteriology 1993;175(6):1831-7.
1992: J B Robertson; Jim C Spain; J D Haddock; David T Gibson
Oxidation of nitrotoluenes by toluene dioxygenase: evidence for a monooxygenase reaction.
Applied and environmental microbiology 1992;58(8):2643-8.
1992: B E Haigler; C A Pettigrew; Jim C Spain
Biodegradation of mixtures of substituted benzenes by Pseudomonas sp. strain JS150.
Applied and environmental microbiology 1992;58(7):2237-44.
1992: S F Nishino; Jim C Spain; L A Belcher; C D Litchfield
Chlorobenzene degradation by bacteria isolated from contaminated groundwater.
Applied and environmental microbiology 1992;58(5):1719-26.
1991: R J Spanggord; Jim C Spain; S F Nishino; K E Mortelmans
Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp.
Applied and environmental microbiology 1991;57(11):3200-5.
1991: B E Haigler; Jim C Spain
Biotransformation of nitrobenzene by bacteria containing toluene degradative pathways.
Applied and environmental microbiology 1991;57(11):3156-62.
1991: Jim C Spain; David T Gibson
Pathway for Biodegradation of p-Nitrophenol in a Moraxella sp.
Applied and environmental microbiology 1991;57(3):812-9.
1991: C A Pettigrew; B E Haigler; Jim C Spain
Simultaneous biodegradation of chlorobenzene and toluene by a Pseudomonas strain.
Applied and environmental microbiology 1991;57(1):157-62.
1989: B E Haigler; Jim C Spain
Degradation of p-chlorotoluene by a mutant of Pseudomonas sp. strain JS6.
Applied and environmental microbiology 1989;55(2):372-9.
1988: B E Haigler; S F Nishino; Jim C Spain
Degradation of 1,2-dichlorobenzene by a Pseudomonas sp.
Applied and environmental microbiology 1988;54(2):294-301.
1987: Jim C Spain; S F Nishino
Degradation of 1,4-dichlorobenzene by a Pseudomonas sp.
Applied and environmental microbiology 1987;53(5):1010-9.
1985: C C Somerville; C A Monti; Jim C Spain
Modification of the 14C most-probable-number method for use with nonpolar and volatile substrates.
Applied and environmental microbiology 1985;49(3):711-3.