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Jeremy Squire
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49
Bayani, Jane
47
Zielenska, Maria
19
Beheshti, Ben
18
Yoshimoto, Maisa
15
Marrano, Paula
13
Weksberg, Rosanna
11
Karaskova, Jana
9
Thorner, Paul
8
Selvarajah, Shamini
8
Rogatto, Silvia Regina
8
Lai, Paul
8
Pandita, Ajay
8
Park, Paul
8
Al-Romaih, Khaldoun
8
Gallie, Brenda
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All Publications
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2009: Lefebvre Louis; Mar Lynn; Bogutz Aaron; Oh-McGinnis Rosemary; Mandegar Mohammad A; Paderova Jana; Gertsenstein Marina; Squire Jeremy A; Nagy Andras
The interval between Ins2 and Ascl2 is dispensable for imprinting centre function in the murine Beckwith-Wiedemann region.
Human molecular genetics 2009;18(22):4255-67.
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2009: Fang Zhichao; Soleymani Leyla; Pampalakis Georgios; Yoshimoto Maisa; Squire Jeremy A; Sargent Edward H; Kelley Shana O
Direct profiling of cancer biomarkers in tumor tissue using a multiplexed nanostructured microelectrode integrated circuit.
ACS nano 2009;3(10):3207-13.
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2009: Sadikovic Bekim; Yoshimoto Maisa; Chilton-MacNeill Susan; Thorner Paul; Squire Jeremy A; Zielenska Maria
Identification of interactive networks of gene expression associated with osteosarcoma oncogenesis by integrated molecular profiling.
Human molecular genetics 2009;18(11):1962-75.
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2009: Chen Connie S; Squire Jeremy A; Wells Peter G
Reduced tumorigenesis in p53 knockout mice exposed in utero to low-dose vitamin E.
Cancer 2009;115(7):1563-75.
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2009: Maire Georges; Yoshimoto Maisa; Chilton-MacNeill Susan; Thorner Paul S; Zielenska Maria; Squire Jeremy A
Recurrent RECQL4 imbalance and increased gene expression levels are associated with structural chromosomal instability in sporadic osteosarcoma.
Neoplasia (New York, N.Y.) 2009;11(3):260-8, 3p following 268.
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2008: Bayani Jane; Paliouras Miltiadis; Planque Chris; Shan Shannon J C; Graham Cassandra; Squire Jeremy A; Diamandis Eleftherios P
Impact of cytogenetic and genomic aberrations of the kallikrein locus in ovarian cancer.
Molecular oncology 2008;2(3):250-60.
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2008: Bayani Jane; Paderova Jana; Murphy Joan; Rosen Barry; Zielenska Maria; Squire Jeremy A
Distinct patterns of structural and numerical chromosomal instability characterize sporadic ovarian cancer.
Neoplasia (New York, N.Y.) 2008;10(10):1057-65.
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2008: Sadikovic B; Al-Romaih K; Squire J A; Zielenska M
Cause and consequences of genetic and epigenetic alterations in human cancer.
Current genomics 2008;9(6):394-408.
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2008: Zhu Chang-Qi; da Cunha Santos Gilda; Ding Keyue; Sakurada Akira; Cutz Jean-Claude; Liu Ni; Zhang Tong; Marrano Paula; Whitehead Marlo; Squire Jeremy A; Kamel-Reid Suzanne; Seymour Lesley; Shepherd Frances A; Tsao Ming-Sound;
Role of KRAS and EGFR as biomarkers of response to erlotinib in National Cancer Institute of Canada Clinical Trials Group Study BR.21.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2008;26(26):4268-75.
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2008: Al-Romaih Khaldoun; Sadikovic Bekim; Yoshimoto Maisa; Wang Yuzhuo; Zielenska Maria; Squire Jeremy A
Decitabine-induced demethylation of 5' CpG island in GADD45A leads to apoptosis in osteosarcoma cells.
Neoplasia (New York, N.Y.) 2008;10(5):471-80.
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2008: Prasad Mona; Bernardini Marcus; Tsalenko Anya; Marrano Paula; Paderova Jana; Lee Chung-Hae; Ben-Dor Amir; Barrett Michael T; Squire Jeremy A
High definition cytogenetics and oligonucleotide aCGH analyses of cisplatin-resistant ovarian cancer cells.
Genes, chromosomes & cancer 2008;47(5):427-36.
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2008: Dimaras Helen; Khetan Vikas; Halliday William; Orlic Marija; Prigoda Nadia L; Piovesan Beata; Marrano Paula; Corson Timothy W; Eagle Ralph C; Squire Jeremy A; Gallie Brenda L
Loss of RB1 induces non-proliferative retinoma: increasing genomic instability correlates with progression to retinoblastoma.
Human molecular genetics 2008;17(10):1363-72.
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2008: Joshua A M; Evans A; Van der Kwast T; Zielenska M; Meeker A K; Chinnaiyan A; Squire J A
Prostatic preneoplasia and beyond.
Biochimica et biophysica acta 2008;1785(2):156-81.
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2008: Maire Georges; Brown Christopher W; Bayani Jane; Pereira Carlos; Gravel Denis H; Bell John C; Zielenska Maria; Squire Jeremy A
Complex rearrangement of chromosomes 19, 21, and 22 in Ewing sarcoma involving a novel reciprocal inversion-insertion mechanism of EWS-ERG fusion gene formation: a case analysis and literature review.
Cancer genetics and cytogenetics 2008;181(2):81-92.
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2008: Oh Rosemary; Ho Rita; Mar Lynn; Gertsenstein Marina; Paderova Jana; Hsien John; Squire Jeremy A; Higgins Michael J; Nagy Andras; Lefebvre Louis
Epigenetic and phenotypic consequences of a truncation disrupting the imprinted domain on distal mouse chromosome 7.
Molecular and cellular biology 2008;28(3):1092-103.
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2008: Selvarajah S; Yoshimoto M; Ludkovski O; Park P C; Bayani J; Thorner P; Maire G; Squire J A; Zielenska M
Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH.
Cytogenetic and genome research 2008;122(1):5-15.
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2008: Sadikovic Bekim; Yoshimoto Maisa; Al-Romaih Khaldoun; Maire Georges; Zielenska Maria; Squire Jeremy A
In vitro analysis of integrated global high-resolution DNA methylation profiling with genomic imbalance and gene expression in osteosarcoma.
PloS one 2008;3(7):e2834.
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2007: Paderova Jana; Orlic-Milacic Marija; Yoshimoto Maisa; da Cunha Santos Gilda; Gallie Brenda; Squire Jeremy A
Novel 6p rearrangements and recurrent translocation breakpoints in retinoblastoma cell lines identified by spectral karyotyping and mBAND analyses.
Cancer genetics and cytogenetics 2007;179(2):102-11.
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2007: Selvarajah Shamini; Yoshimoto Maisa; Maire Georges; Paderova Jana; Bayani Jane; Squire Jeremy A; Zielenska Maria
Identification of cryptic microaberrations in osteosarcoma by high-definition oligonucleotide array comparative genomic hybridization.
Cancer genetics and cytogenetics 2007;179(1):52-61.
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2007: Yoshimoto M; Cunha I W; Coudry R A; Fonseca F P; Torres C H; Soares F A; Squire J A
FISH analysis of 107 prostate cancers shows that PTEN genomic deletion is associated with poor clinical outcome.
British journal of cancer 2007;97(5):678-85.
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2007: Pang Etonia Y-T; Bai Alfa H-C; To Ka-Fai; Sy Shirley M-H; Wong Navy L-Y; Lai Paul B-S; Squire Jeremy A; Wong Nathalie
Identification of PFTAIRE protein kinase 1, a novel cell division cycle-2 related gene, in the motile phenotype of hepatocellular carcinoma cells.
Hepatology (Baltimore, Md.) 2007;46(2):436-45.
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2007: Dalla-Torre Cristiane Arruda; de Toledo Silvia Regina Caminada; Yoshimoto Maisa; Petrilli Antônio Sérgio; Andrade Joyce Anderson Duffles; Chilton-MacNeill Susan; Squire Jeremy A; Zielenska Maria
Expression of major vault protein gene in osteosarcoma patients.
Journal of orthopaedic research : official publication of the Orthopaedic Research Society 2007;25(7):958-63.
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2007: Ghazani Arezou A; Arneson Nona; Warren Keisha; Pintilie Melania; Bayani Jane; Squire Jeremy A; Done Susan J
Genomic alterations in sporadic synchronous primary breast cancer using array and metaphase comparative genomic hybridization.
Neoplasia (New York, N.Y.) 2007;9(6):511-20.
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2007: Agulnik Mark; da Cunha Santos Gilda; Hedley David; Nicklee Trudey; Dos Reis Patricia Pintor; Ho James; Pond Gregory R; Chen Heidi; Chen Shuo; Shyr Yu; Winquist Eric; Soulieres Denis; Chen Eric X; Squire Jeremy A; Marrano Paula; Kamel-Reid Suzanne; Dancey Janet; Siu Lillian L; Tsao Ming S
Predictive and pharmacodynamic biomarker studies in tumor and skin tissue samples of patients with recurrent or metastatic squamous cell carcinoma of the head and neck treated with erlotinib.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2007;25(16):2184-90.
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2007: Ip Wai-Ki; Lai Paul B-S; Wong Navy L-Y; Sy Shirley M-H; Beheshti Ben; Squire Jeremy A; Wong Nathalie
Identification of PEG10 as a progression related biomarker for hepatocellular carcinoma.
Cancer letters 2007;250(2):284-91.
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2007: Park Paul C; Selvarajah Shamini; Bayani Jane; Zielenska Maria; Squire Jeremy A
Stem cell enrichment approaches.
Seminars in cancer biology 2007;17(3):257-64.
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2007: Selvarajah Shamini; Yoshimoto Maisa; Prasad Mona; Shago Mary; Squire Jeremy A; Zielenska Maria; Somers Gino R
Characterization of trisomy 8 in pediatric undifferentiated sarcomas using advanced molecular cytogenetic techniques.
Cancer genetics and cytogenetics 2007;174(1):35-41.
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2007: Bayani Jane; Squire Jeremy A
Application and interpretation of FISH in biomarker studies.
Cancer letters 2007;249(1):97-109.
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2007: Bayani Jane; Selvarajah Shamini; Maire Georges; Vukovic Bisera; Al-Romaih Khaldoun; Zielenska Maria; Squire Jeremy A
Genomic mechanisms and measurement of structural and numerical instability in cancer cells.
Seminars in cancer biology 2007;17(1):5-18.
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2007: Bowles Ella; Corson Timothy W; Bayani Jane; Squire Jeremy A; Wong Nathalie; Lai Paul B-S; Gallie Brenda L
Profiling genomic copy number changes in retinoblastoma beyond loss of RB1.
Genes, chromosomes & cancer 2007;46(2):118-29.
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2007: Watson Spencer K; deLeeuw Ronald J; Horsman Doug E; Squire Jeremy A; Lam Wan L
Cytogenetically balanced translocations are associated with focal copy number alterations.
Human genetics 2007;120(6):795-805.
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2007: Weksberg Rosanna; Stachon Andrea C; Squire Jeremy A; Moldovan Laura; Bayani Jane; Meyn Stephen; Chow Eva; Bassett Anne S
Molecular characterization of deletion breakpoints in adults with 22q11 deletion syndrome.
Human genetics 2007;120(6):837-45.
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2007: Joshua Anthony Michael; Vukovic Bisera; Braude Ilan; Hussein Sundus; Zielenska Maria; Srigley John; Evans Andrew; Squire Jeremy Andrew
Telomere attrition in isolated high-grade prostatic intraepithelial neoplasia and surrounding stroma is predictive of prostate cancer.
Neoplasia (New York, N.Y.) 2007;9(1):81-9.
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2007: Santos Gda C; Zielenska M; Prasad M; Squire J A
Chromosome 6p amplification and cancer progression.
Journal of clinical pathology 2007;60(1):1-7.
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2007: Al-Romaih Khaldoun; Somers Gino R; Bayani Jane; Hughes Simon; Prasad Mona; Cutz Jean-Claude; Xue Hui; Zielenska Maria; Wang Yuzhuo; Squire Jeremy A
Modulation by decitabine of gene expression and growth of osteosarcoma U2OS cells in vitro and in xenografts: Identification of apoptotic genes as targets for demethylation.
Cancer cell international 2007;7():14.
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2007: Vukovic B; Beheshti B; Park P; Lim G; Bayani J; Zielenska M; Squire J A
Correlating breakage-fusion-bridge events with the overall chromosomal instability and in vitro karyotype evolution in prostate cancer.
Cytogenetic and genome research 2007;116(1-2):1-11.
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2006: Chan Kathy Y-Y; Lai Paul B-S; Squire Jeremy A; Beheshti Ben; Wong Navy L-Y; Sy Shirley M-H; Wong Nathalie
Positional expression profiling indicates candidate genes in deletion hotspots of hepatocellular carcinoma.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2006;19(12):1546-54.
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2006: Selvarajah Shamini; Yoshimoto Maisa; Park Paul C; Maire Georges; Paderova Jana; Bayani Jane; Lim Gloria; Al-Romaih Khaldoun; Squire Jeremy A; Zielenska Maria
The breakage-fusion-bridge (BFB) cycle as a mechanism for generating genetic heterogeneity in osteosarcoma.
Chromosoma 2006;115(6):459-67.
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2006: Kennedy J A; Barabé F; Patterson B J; Bayani J; Squire J A; Barber D L; Dick J E
Expression of TEL-JAK2 in primary human hematopoietic cells drives erythropoietin-independent erythropoiesis and induces myelofibrosis in vivo.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(45):16930-5.
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2006: Yoshimoto Maisa; Bayani Jane; Nuin Paulo A S; Silva Nasjla S; Cavalheiro Sergio; Stavale João N; Andrade Joyce A D; Zielenska Maria; Squire Jeremy A; de Toledo Silvia R C
Metaphase and array comparative genomic hybridization: unique copy number changes and gene amplification of medulloblastomas in South America.
Cancer genetics and cytogenetics 2006;170(1):40-7.
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2006: Yoshimoto Maisa; Cutz Jean-Claude; Nuin Paulo A S; Joshua Anthony M; Bayani Jane; Evans Andrew J; Zielenska Maria; Squire Jeremy A
Interphase FISH analysis of PTEN in histologic sections shows genomic deletions in 68% of primary prostate cancer and 23% of high-grade prostatic intra-epithelial neoplasias.
Cancer genetics and cytogenetics 2006;169(2):128-37.
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2006: Cutz Jean-Claude; Guan Jun; Bayani Jane; Yoshimoto Maisa; Xue Hui; Sutcliffe Margaret; English John; Flint Julia; LeRiche Jean; Yee John; Squire Jeremy A; Gout Peter W; Lam Stephen; Wang Yu-Zhuo
Establishment in severe combined immunodeficiency mice of subrenal capsule xenografts and transplantable tumor lines from a variety of primary human lung cancers: potential models for studying tumor progression-related changes.
Clinical cancer research : an official journal of the American Association for Cancer Research 2006;12(13):4043-54.
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2006: Shuman Cheryl; Smith Adam C; Steele Leslie; Ray Peter N; Clericuzio Carol; Zackai Elaine; Parisi Melissa A; Meadows Anna T; Kelly Thaddeus; Tichauer David; Squire Jeremy A; Sadowski Paul; Weksberg Rosanna
Constitutional UPD for chromosome 11p15 in individuals with isolated hemihyperplasia is associated with high tumor risk and occurs following assisted reproductive technologies.
American journal of medical genetics. Part A 2006;140(14):1497-503.
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2006: Yoshimoto Maisa; Joshua Anthony M; Chilton-Macneill Susan; Bayani Jane; Selvarajah Shamini; Evans Andrew J; Zielenska Maria; Squire Jeremy A
Three-color FISH analysis of TMPRSS2/ERG fusions in prostate cancer indicates that genomic microdeletion of chromosome 21 is associated with rearrangement.
Neoplasia (New York, N.Y.) 2006;8(6):465-9.
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2006: Zhu C-Q; Cutz J-C; Liu N; Lau D; Shepherd F A; Squire J A; Tsao M-S
Amplification of telomerase (hTERT) gene is a poor prognostic marker in non-small-cell lung cancer.
British journal of cancer 2006;94(10):1452-9.
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2006: Dalla-Torre Cristiane A; Yoshimoto Maisa; Lee Chung-Hae; Joshua Anthony M; de Toledo Silvia R C; Petrilli Antônio S; Andrade Joyce A D; Chilton-MacNeill Susan; Zielenska Maria; Squire Jeremy A
Effects of THBS3, SPARC and SPP1 expression on biological behavior and survival in patients with osteosarcoma.
BMC cancer 2006;6():237.
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2006: Braude Ilan; Vukovic Bisera; Prasad Mona; Marrano Paula; Turley Stefanie; Barber Dwayne; Zielenska Maria; Squire Jeremy A
Large scale copy number variation (CNV) at 14q12 is associated with the presence of genomic abnormalities in neoplasia.
BMC genomics 2006;7():138.
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2006: Hughes Simon; Yoshimoto Maisa; Beheshti Ben; Houlston Richard S; Squire Jeremy A; Evans Andrew
The use of whole genome amplification to study chromosomal changes in prostate cancer: insights into genome-wide signature of preneoplasia associated with cancer progression.
BMC genomics 2006;7():65.
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2005: Scrideli Carlos A; Baruffi Marcelo R; Squire Jeremy A; Ramos Ester S; Karaskova Jana; Heck Benjamin; Tone Luiz G
Acute monocytic leukemia and multiple abnormalities in a child with duplication of 1q detected by GTG-banding and SKY.
Leukemia research 2005;29(12):1465-7.
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2005: Li Mei Hua; Bouffet Eric; Hawkins Cynthia E; Squire Jeremy A; Huang Annie
Molecular genetics of supratentorial primitive neuroectodermal tumors and pineoblastoma.
Neurosurgical focus 2005;19(5):E3.
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2005: Bayani Jane; Pandita Ajay; Squire Jeremy A
Molecular cytogenetic analysis in the study of brain tumors: findings and applications.
Neurosurgical focus 2005;19(5):E1.
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2005: Wang Yuwei; Xue Hui; Cutz Jean-Claude; Bayani Jane; Mawji Nasrin R; Chen Wilfred G; Goetz Lester J; Hayward Simon W; Sadar Marianne D; Gilks C Blake; Gout Peter W; Squire Jeremy A; Cunha Gerald R; Wang Yu-Zhuo
An orthotopic metastatic prostate cancer model in SCID mice via grafting of a transplantable human prostate tumor line.
Laboratory investigation; a journal of technical methods and pathology 2005;85(11):1392-404.
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2005: Kotchetkov Rouslan; Driever Pablo Hernáiz; Cinatl Jaroslav; Michaelis Martin; Karaskova Jana; Blaheta Roman; Squire Jeremy A; Von Deimling Andreas; Moog Jussi; Cinatl Jindrich
Increased malignant behavior in neuroblastoma cells with acquired multi-drug resistance does not depend on P-gp expression.
International journal of oncology 2005;27(4):1029-37.
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2005: Esteves Leda I C V; Javaroni Afonso C; Nishimoto Inês N; Magrin José; Squire Jeremy A; Kowalski Luiz P; Rainho Cláudia A; Rogatto Silvia R
DNA methylation in the CTCF-binding site I and the expression pattern of the H19 gene: does positive expression predict poor prognosis in early stage head and neck carcinomas?
Molecular carcinogenesis 2005;44(2):102-10.
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2005: Somers Gino R; Ho Michael; Zielenska Maria; Squire Jeremy A; Thorner Paul S
HER2 amplification and overexpression is not present in pediatric osteosarcoma: a tissue microarray study.
Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society 2005;8(5):525-32.
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2005: Bernardini Marcus; Lee Chung-Hae; Beheshti Ben; Prasad Mona; Albert Monique; Marrano Paula; Begley Heather; Shaw Patricia; Covens Al; Murphy Joan; Rosen Barry; Minkin Salomon; Squire Jeremy A; Macgregor Pascale F
High-resolution mapping of genomic imbalance and identification of gene expression profiles associated with differential chemotherapy response in serous epithelial ovarian cancer.
Neoplasia (New York, N.Y.) 2005;7(6):603-13.
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2005: Pang Elizabeth; Hu Ying; Chan Kathy Y-Y; Lai Paul B-S; Squire Jeremy A; Macgregor Pascale F; Beheshti Ben; Albert Monique; Leung Thomas W-T; Wong Nathalie
Karyotypic imbalances and differential gene expressions in the acquired doxorubicin resistance of hepatocellular carcinoma cells.
Laboratory investigation; a journal of technical methods and pathology 2005;85(5):664-74.
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2005: Chan Kathy Y-Y; Wong Nathalie; Lai Paul B-S; Squire Jeremy A; Macgregor Pascale F; Beheshti Ben; Albert Monique; To Ka-Fai; Johnson Philip J
Transcriptional profiling on chromosome 19p indicated frequent downregulation of ACP5 expression in hepatocellular carcinoma.
International journal of cancer. Journal international du cancer 2005;114(6):902-8.
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2005: Lim Gloria; Karaskova Jana; Beheshti Ben; Vukovic Bisera; Bayani Jane; Selvarajah Shamini; Watson Spencer K; Lam Wan L; Zielenska Maria; Squire Jeremy A
An integrated mBAND and submegabase resolution tiling set (SMRT) CGH array analysis of focal amplification, microdeletions, and ladder structures consistent with breakage-fusion-bridge cycle events in osteosarcoma.
Genes, chromosomes & cancer 2005;42(4):392-403.
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2005: Wong Nathalie; Chan Kathy Y-Y; Macgregor Pascale F; Lai Paul B-S; Squire Jeremy A; Beheshti Ben; Albert Monique; Leung Thomas W-T
Transcriptional profiling identifies gene expression changes associated with IFN-alpha tolerance in hepatitis C-related hepatocellular carcinoma cells.
Clinical cancer research : an official journal of the American Association for Cancer Research 2005;11(3):1319-26.
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2005: Bayani Jane; Squire Jeremy A
Detection of mitotic figures and components of the mitotic machinery.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2005;Chapter 22():Unit 22.8.
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2005: Bayani Jane; Squire Jeremy A
Sister chromatid exchange.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2005;Chapter 22():Unit 22.7.
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2005: Bayani Jane; Squire Jeremy A
Comparative genomic hybridization.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2005;Chapter 22():Unit 22.6.
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2005: Bérgamo Nádia Aparecida; da Silva Veiga Luciana Caricati; dos Reis Patricia Pintor; Nishimoto Inês Nobuko; Magrin José; Kowalski Luiz Paulo; Squire Jeremy A; Rogatto Sílvia Regina
Classic and molecular cytogenetic analyses reveal chromosomal gains and losses correlated with survival in head and neck cancer patients.
Clinical cancer research : an official journal of the American Association for Cancer Research 2005;11(2 Pt 1):621-31.
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2005: Weksberg Rosanna; Hughes Simon; Moldovan Laura; Bassett Anne S; Chow Eva W C; Squire Jeremy A
A method for accurate detection of genomic microdeletions using real-time quantitative PCR.
BMC genomics 2005;6():180.
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2004: Hu Ying; Pang Elizabeth; Lai Paul B-S; Squire Jeremy A; MacGregor Pascale F; Beheshti Ben; Albert Monique; Leung Thomas W-T; Wong Nathalie
Genetic alterations in doxorubicin-resistant hepatocellular carcinoma cells: a combined study of spectral karyotyping, positional expression profiling and candidate genes.
International journal of oncology 2004;25(5):1357-64.
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2004: Bayani Jane; Squire Jeremy A
Fluorescence in situ Hybridization (FISH).
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2004;Chapter 22():Unit 22.4.
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2004: Bayani Jane; Squire Jeremy A
Traditional banding of chromosomes for cytogenetic analysis.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2004;Chapter 22():Unit 22.3.
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2004: Bayani Jane; Squire Jeremy A
Preparation of cytogenetic specimens from tissue samples.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2004;Chapter 22():Unit 22.2.
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2004: Bayani Jane; Squire Jeremy A
Overview of cytogenetic chromosome analysis.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2004;Chapter 22():Unit 22.1.
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2004: Lim Gloria; Karaskova Jana; Vukovic Bisera; Bayani Jane; Beheshti Ben; Bernardini Marcus; Squire Jeremy A; Zielenska Maria
Combined spectral karyotyping, multicolor banding, and microarray comparative genomic hybridization analysis provides a detailed characterization of complex structural chromosomal rearrangements associated with gene amplification in the osteosarcoma cell line MG-63.
Cancer genetics and cytogenetics 2004;153(2):158-64.
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2004: Yoshimoto Maisa; de Toledo Sílvia Regina Caminada; da Silva Nasjla Saba; Bayani Jane; Bertozzi Ana Paula Antunes Pascalicchio; Stavale João Norberto; Cavalheiro Sergio; Andrade Joyce Anderson Duffles; Zielenska Maria; Squire Jeremy A
Comparative genomic hybridization analysis of pediatric adamantinomatous craniopharyngiomas and a review of the literature.
Journal of neurosurgery 2004;101(1 Suppl):85-90.
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2004: Bernardini M; Weberpals J; Squire J A
The use of cytogenetics in understanding ovarian cancer.
Biomedicine & pharmacotherapy = Biomédecine & pharmacothérapie 2004;58(1):17-23.
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2004: Evans Andrew J; Gallie Brenda L; Jewett Michael A S; Pond Gregory R; Vandezande Kirk; Underwood John; Fradet Yves; Lim Gloria; Marrano Paula; Zielenska Maria; Squire Jeremy A
Defining a 0.5-mb region of genomic gain on chromosome 6p22 in bladder cancer by quantitative-multiplex polymerase chain reaction.
The American journal of pathology 2004;164(1):285-93.
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2004: Zielenska M; Marrano P; Thorner P; Pei J; Beheshti B; Ho M; Bayani J; Liu Y; Sun B C; Squire J A; Hao X-S
High-resolution cDNA microarray CGH mapping of genomic imbalances in osteosarcoma using formalin-fixed paraffin-embedded tissue.
Cytogenetic and genome research 2004;107(1-2):77-82.
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2004: Hughes S; Lim G; Beheshti B; Bayani J; Marrano P; Huang A; Squire J A
Use of whole genome amplification and comparative genomic hybridisation to detect chromosomal copy number alterations in cell line material and tumour tissue.
Cytogenetic and genome research 2004;105(1):18-24.
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2003: Squire Jeremy A; Pei Jianming; Marrano Paula; Beheshti Ben; Bayani Jane; Lim Gloria; Moldovan Laura; Zielenska Maria
High-resolution mapping of amplifications and deletions in pediatric osteosarcoma by use of CGH analysis of cDNA microarrays.
Genes, chromosomes & cancer 2003;38(3):215-25.
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2003: Phillips M James; Azuma Toshifumi; Meredith Sheue-Lim M; Squire Jeremy A; Ackerley Cameron A; Pluthero Fred G; Roberts Eve A; Superina Riccardo A; Levy Gary A; Marsden Philip A
Abnormalities in villin gene expression and canalicular microvillus structure in progressive cholestatic liver disease of childhood.
Lancet 2003;362(9390):1112-9.
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2003: Al-Romaih K; Bayani J; Vorobyova J; Karaskova J; Park P C; Zielenska M; Squire J A
Chromosomal instability in osteosarcoma and its association with centrosome abnormalities.
Cancer genetics and cytogenetics 2003;144(2):91-9.
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2003: Kolomietz E; Marrano P; Yee K; Thai B; Braude I; Kolomietz A; Chun K; Minkin S; Kamel-Reid S; Minden M; Squire J A
Quantitative PCR identifies a minimal deleted region of 120 kb extending from the Philadelphia chromosome ABL translocation breakpoint in chronic myeloid leukemia with poor outcome.
Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K 2003;17(7):1313-23.
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2003: Beheshti Ben; Braude Ilan; Marrano Paula; Thorner Paul; Zielenska Maria; Squire Jeremy A
Chromosomal localization of DNA amplifications in neuroblastoma tumors using cDNA microarray comparative genomic hybridization.
Neoplasia (New York, N.Y.) 2003;5(1):53-62.
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2003: Gladdy Rebecca A; Taylor Michael D; Williams Christine J; Grandal Ildiko; Karaskova Jana; Squire Jeremy A; Rutka James T; Guidos Cynthia J; Danska Jayne S
The RAG-1/2 endonuclease causes genomic instability and controls CNS complications of lymphoblastic leukemia in p53/Prkdc-deficient mice.
Cancer cell 2003;3(1):37-50.
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2003: Bayani Jane; Zielenska Maria; Pandita Ajay; Al-Romaih Khaldoun; Karaskova Jana; Harrison Karen; Bridge Julia A; Sorensen Poul; Thorner Paul; Squire Jeremy A
Spectral karyotyping identifies recurrent complex rearrangements of chromosomes 8, 17, and 20 in osteosarcomas.
Genes, chromosomes & cancer 2003;36(1):7-16.
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2002: Kolomietz Elena; Meyn M Stephen; Pandita Ajay; Squire Jeremy A
The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors.
Genes, chromosomes & cancer 2002;35(2):97-112.
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2002: Reis Patricia P; Rogatto Silvia R; Kowalski Luiz P; Nishimoto Inês N; Montovani Jair C; Corpus George; Squire Jeremy A; Kamel-Reid Suzanne
Quantitative real-time PCR identifies a critical region of deletion on 22q13 related to prognosis in oral cancer.
Oncogene 2002;21(42):6480-7.
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2002: Squire Jeremy A; Bayani Jane; Luk Catherine; Unwin Lianne; Tokunaga Jason; MacMillan Christina; Irish Jonathan; Brown Dale; Gullane Patrick; Kamel-Reid Suzanne
Molecular cytogenetic analysis of head and neck squamous cell carcinoma: By comparative genomic hybridization, spectral karyotyping, and expression array analysis.
Head & neck 2002;24(9):874-87.
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2002: Beheshti Ben; Vukovic Bisera; Marrano Paula; Squire Jeremy A; Park Paul C
Resolution of genotypic heterogeneity in prostate tumors using polymerase chain reaction and comparative genomic hybridization on microdissected carcinoma and prostatic intraepithelial neoplasia foci.
Cancer genetics and cytogenetics 2002;137(1):15-22.
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2002: Macgregor Pascale F; Squire Jeremy A
Application of microarrays to the analysis of gene expression in cancer.
Clinical chemistry 2002;48(8):1170-7.
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2002: Taylor Michael D; Liu Ling; Raffel Corey; Hui Chi-chung; Mainprize Todd G; Zhang Xiaoyun; Agatep Ron; Chiappa Sharon; Gao Luzhang; Lowrance Anja; Hao Aihau; Goldstein Alisa M; Stavrou Theodora; Scherer Stephen W; Dura Wieslaw T; Wainwright Brandon; Squire Jeremy A; Rutka James T; Hogg David
Mutations in SUFU predispose to medulloblastoma.
Nature genetics 2002;31(3):306-10.
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2002: Bayani Jane; Brenton James D; Macgregor Pascale F; Beheshti Ben; Albert Monique; Nallainathan Dhani; Karaskova Jana; Rosen Barry; Murphy Joan; Laframboise Stephanie; Zanke Brent; Squire Jeremy A
Parallel analysis of sporadic primary ovarian carcinomas by spectral karyotyping, comparative genomic hybridization, and expression microarrays.
Cancer research 2002;62(12):3466-76.
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2002: Chan Agnes S; Thorner Paul S; Squire Jeremy A; Zielenska Maria
Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes.
Oncogene 2002;21(19):3029-37.
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2002: Ojopi Elida Paula Benquique; Cavalli Luciane Regina; Cavalieri Luciane Mara Bogline; Squire Jeremy A; Rogatto Silvia Regina
Comparative genomic hybridization analysis of benign and invasive male breast neoplasms.
Cancer genetics and cytogenetics 2002;134(2):123-6.
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2002: Chen Danian; Pajovic Sanja; Duckett Allison; Brown Vivette D; Squire Jeremy A; Gallie Brenda L
Genomic amplification in retinoblastoma narrowed to 0.6 megabase on chromosome 6p containing a kinesin-like gene, RBKIN.
Cancer research 2002;62(4):967-71.
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2002: Al-Maghrabi Jaudah; Vorobyova Lada; Toi A; Chapman William; Zielenska Maria; Squire Jeremy A
Identification of numerical chromosomal changes detected by interphase fluorescence in situ hybridization in high-grade prostate intraepithelial neoplasia as a predictor of carcinoma.
Archives of pathology & laboratory medicine 2002;126(2):165-9.
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2002: Beheshti Ben; Park Paul C; Braude Ilan; Squire Jeremy A
Microarray CGH.
Methods in molecular biology (Clifton, N.J.) 2002;204():191-207.
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2002: Bayani Jane; Squire Jeremy A
Spectral karyotyping.
Methods in molecular biology (Clifton, N.J.) 2002;204():85-104.
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2002: Bayani Jane M; Squire Jeremy A
Applications of SKY in cancer cytogenetics.
Cancer investigation 2002;20(3):373-86.
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2001: Al-Maghrabi J; Vorobyova L; Chapman W; Jewett M; Zielenska M; Squire J A
p53 Alteration and chromosomal instability in prostatic high-grade intraepithelial neoplasia and concurrent carcinoma: analysis by immunohistochemistry, interphase in situ hybridization, and sequencing of laser-captured microdissected specimens.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2001;14(12):1252-62.
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2001: Smith A C; Squire J A; Thorner P; Zielenska M; Shuman C; Grant R; Chitayat D; Nishikawa J L; Weksberg R
Association of alveolar rhabdomyosarcoma with the Beckwith-Wiedemann syndrome.
Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society 2001;4(6):550-8.
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2001: Zielenska M; Bayani J; Pandita A; Toledo S; Marrano P; Andrade J; Petrilli A; Thorner P; Sorensen P; Squire J A
Comparative genomic hybridization analysis identifies gains of 1p35 approximately p36 and chromosome 19 in osteosarcoma.
Cancer genetics and cytogenetics 2001;130(1):14-21.
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2001: Taylor M D; Mainprize T G; Squire J A; Rutka J T
Molecular genetics of pineal region neoplasms.
Journal of neuro-oncology 2001;54(3):219-38.
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2001: Chen D; Gallie B L; Squire J A
Minimal regions of chromosomal imbalance in retinoblastoma detected by comparative genomic hybridization.
Cancer genetics and cytogenetics 2001;129(1):57-63.
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2001: Squire J A; Arab S; Marrano P; Bayani J; Karaskova J; Taylor M; Becker L; Rutka J; Zielenska M
Molecular cytogenetic analysis of glial tumors using spectral karyotyping and comparative genomic hybridization.
Molecular diagnosis : a journal devoted to the understanding of human disease through the clinical application of molecular biology 2001;6(2):93-108.
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2001: Zielenska M; Zhang Z M; Ng K; Marrano P; Bayani J; Ramirez O C; Sorensen P; Thorner P; Greenberg M; Squire J A
Acquisition of secondary structural chromosomal changes in pediatric ewing sarcoma is a probable prognostic factor for tumor response and clinical outcome.
Cancer 2001;91(11):2156-64.
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2001: Kolomietz E; Al-Maghrabi J; Brennan S; Karaskova J; Minkin S; Lipton J; Squire J A
Primary chromosomal rearrangements of leukemia are frequently accompanied by extensive submicroscopic deletions and may lead to altered prognosis.
Blood 2001;97(11):3581-8.
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2001: Luk C; Tsao M S; Bayani J; Shepherd F; Squire J A
Molecular cytogenetic analysis of non-small cell lung carcinoma by spectral karyotyping and comparative genomic hybridization.
Cancer genetics and cytogenetics 2001;125(2):87-99.
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2001: Beheshti B; Park P C; Sweet J M; Trachtenberg J; Jewett M A; Squire J A
Evidence of chromosomal instability in prostate cancer determined by spectral karyotyping (SKY) and interphase fish analysis.
Neoplasia (New York, N.Y.) 2001;3(1):62-9.
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2001: Ojopi E P; Rogatto S R; Caldeira J R; Barbiéri-Neto J; Squire J A
Comparative genomic hybridization detects novel amplifications in fibroadenomas of the breast.
Genes, chromosomes & cancer 2001;30(1):25-31.
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2000: Bayani J; Zielenska M; Marrano P; Kwan Ng Y; Taylor M D; Jay V; Rutka J T; Squire J A
Molecular cytogenetic analysis of medulloblastomas and supratentorial primitive neuroectodermal tumors by using conventional banding, comparative genomic hybridization, and spectral karyotyping.
Journal of neurosurgery 2000;93(3):437-48.
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2000: Poli-Frederico R C; Bergamo N A; Reis P P; Kowalski L P; Zielenska M; Squire J A; Rogatto S R
Chromosome 22q a frequent site of allele loss in head and neck carcinoma.
Head & neck 2000;22(6):585-90.
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2000: Squire J A; Li M; Perlikowski S; Fei Y L; Bayani J; Zhang Z M; Weksberg R
Alterations of H19 imprinting and IGF2 replication timing are infrequent in Beckwith-Wiedemann syndrome.
Genomics 2000;65(3):234-42.
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2000: Bergamo N A; Rogatto S R; Poli-Frederico R C; Reis P P; Kowalski L P; Zielenska M; Squire J A
Comparative genomic hybridization analysis detects frequent over-representation of DNA sequences at 3q, 7p, and 8q in head and neck carcinomas.
Cancer genetics and cytogenetics 2000;119(1):48-55.
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2000: Beheshti B; Karaskova J; Park P C; Squire J A; Beatty B G
Identification of a high frequency of chromosomal rearrangements in the centromeric regions of prostate cancer cell lines by sequential giemsa banding and spectral karyotyping.
Molecular diagnosis : a journal devoted to the understanding of human disease through the clinical application of molecular biology 2000;5(1):23-32.
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1999: Pandita A; Zielenska M; Thorner P; Bayani J; Godbout R; Greenberg M; Squire J A
Application of comparative genomic hybridization, spectral karyotyping, and microarray analysis in the identification of subtype-specific patterns of genomic changes in rhabdomyosarcoma.
Neoplasia (New York, N.Y.) 1999;1(3):262-75.
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1999: Midmer M; Haq R; Squire J A; Zanke B W
Identification of NKIAMRE, the human homologue to the mitogen-activated protein kinase-/cyclin-dependent kinase-related protein kinase NKIATRE, and its loss in leukemic blasts with chromosome arm 5q deletion.
Cancer research 1999;59(16):4069-74.
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1999: Dimitroulakos J; Pienkowska M; Sun P; Farooq S; Zielenska M; Squire J A; Yeger H
Identification of a novel zinc finger gene, zf5-3, as a potential mediator of neuroblastoma differentiation.
International journal of cancer. Journal international du cancer 1999;81(6):970-8.
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1999: Rogatto S R; Rainho C A; Zhang Z M; Figueiredo F; Barbieri-Neto J; Georgetto S M; Squire J A
Hemangioendothelioma of bone in a patient with a constitutional supernumerary marker.
Cancer genetics and cytogenetics 1999;110(1):23-7.
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1999: Gallie B L; Campbell C; Devlin H; Duckett A; Squire J A
Developmental basis of retinal-specific induction of cancer by RB mutation.
Cancer research 1999;59(7 Suppl):1731s-1735s.
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1998: Li M; Squire J A; Weksberg R
Molecular genetics of Wiedemann-Beckwith syndrome.
American journal of medical genetics 1998;79(4):253-9.
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1998: Thorner P S; Squire J A
Molecular genetics in the diagnosis and prognosis of solid pediatric tumors.
Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society 1998;1(5):337-65.
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1998: Li M; Squire J A; Weksberg R
Overgrowth syndromes and genomic imprinting: from mouse to man.
Clinical genetics 1998;53(3):165-70.
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1997: Li M; Squire J A; Weksberg R
Molecular genetics of Beckwith-Wiedemann syndrome.
Current opinion in pediatrics 1997;9(6):623-9.
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1997: Pandita A; Godbout R; Zielenska M; Thorner P; Bayani J; Squire J A
Relational mapping of MYCN and DDXI in band 2p24 and analysis of amplicon arrays in double minute chromosomes and homogeneously staining regions by use of free chromatin FISH.
Genes, chromosomes & cancer 1997;20(3):243-52.
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1997: Wu H K; Squire J A; Catzavelos C G; Weksberg R
Relaxation of imprinting of human insulin-like growth factor II gene, IGF2, in sporadic breast carcinomas.
Biochemical and biophysical research communications 1997;235(1):123-9.
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1997: Wu H K; Squire J A; Song Q; Weksberg R
Promoter-dependent tissue-specific expressive nature of imprinting gene, insulin-like growth factor II, in human tissues.
Biochemical and biophysical research communications 1997;233(1):221-6.
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1997: Wu H K; Weksberg R; Minden M D; Squire J A
Loss of imprinting of human insulin-like growth factor II gene, IGF2, in acute myeloid leukemia.
Biochemical and biophysical research communications 1997;231(2):466-72.
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1997: Godbout R; Pandita A; Beatty B; Bie W; Squire J A
Comparative genomic hybridization analysis of Y79 and FISH mapping indicate the amplified human mitochondrial ATP synthase alpha-subunit gene (ATP5A) maps to chromosome 18q12-->q21.
Cytogenetics and cell genetics 1997;77(3-4):253-6.
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1996: Pienkowska M; Dimitroulakos J; Zielenska M; Thorner P; Plavsic N; Yeger H; Squire J A
Selection of probes for fluorescence in situ hybridization analysis by differential display polymerase chain reaction of mRNA from rhabdomyosarcoma.
Cancer genetics and cytogenetics 1996;92(1):58-65.
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1996: Weksberg R; Squire J A
Molecular biology of Beckwith-Wiedemann syndrome.
Medical and pediatric oncology 1996;27(5):462-9.
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1996: Weksberg R; Squire J A; Templeton D M
Glypicans: a growing trend.
Nature genetics 1996;12(3):225-7.
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1996: Squire J A; McPherson J P; Beatty B G; Goldenberg G J
Allelic fusion of DNA topoisomerase II alpha and retinoic acid receptor alpha genes in adriamycin-resistant p388 murine leukemia revealed by fluorescence in situ hybridization.
Cytogenetics and cell genetics 1996;75(2-3):164-6.
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1995: Bayani J; Thorner P; Zielenska M; Pandita A; Beatty B; Squire J A
Application of a simplified comparative genomic hybridization technique to screen for gene amplification in pediatric solid tumors.
Pediatric pathology & laboratory medicine : journal of the Society for Pediatric Pathology, affiliated with the International Paediatric Pathology Association 1995;15(6):831-44.
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1995: Bie W; Squire J A; Fraser M; Paterson M C; Godbout R
Mitochondrial ATP synthase alpha-subunit gene amplified in a retinoblastoma cell line maps to chromosome 18.
Genes, chromosomes & cancer 1995;14(1):63-7.
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1995: Tan J; D'Agostaro A F; Bendiak B; Reck F; Sarkar M; Squire J A; Leong P; Schachter H
The human UDP-N-acetylglucosamine: alpha-6-D-mannoside-beta-1,2- N-acetylglucosaminyltransferase II gene (MGAT2). Cloning of genomic DNA, localization to chromosome 14q21, expression in insect cells and purification of the recombinant protein.
European journal of biochemistry / FEBS 1995;231(2):317-28.
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1995: Squire J A; Thorner P S; Weitzman S; Maggi J D; Dirks P; Doyle J; Hale M; Godbout R
Co-amplification of MYCN and a DEAD box gene (DDX1) in primary neuroblastoma.
Oncogene 1995;10(7):1417-22.
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1994: Tay A; Squire J A; Goldberg H; Skorecki K
Assignment of the human prostaglandin-endoperoxide synthase 2 (PTGS2) gene to 1q25 by fluorescence in situ hybridization.
Genomics 1994;23(3):718-9.
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1994: Roux A F; Nguyen V T; Squire J A; Cox D W
A heat shock gene at 14q22: mapping and expression.
Human molecular genetics 1994;3(10):1819-22.
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1992: Zhu X; Dunn J M; Goddard A D; Squire J A; Becker A; Phillips R A; Gallie B L
Mechanisms of loss of heterozygosity in retinoblastoma.
Cytogenetics and cell genetics 1992;59(4):248-52.
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1990: Gallie B L; Squire J A; Goddard A; Dunn J M; Canton M; Hinton D; Zhu X P; Phillips R A
Mechanism of oncogenesis in retinoblastoma.
Laboratory investigation; a journal of technical methods and pathology 1990;62(4):394-408.
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