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Alexander Stark

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Publications

TOP 3
Ulrich Elling; Ronan O'Malley; Simon-Pierre Demers; Joseph R Ecker; Gerald Schmauss; Frank Schnuetgen; Daniel Schramek; Andrey I Shukalyuk; William L Stanford; Alexander Stark; Jasmin Taubenschmid; Quentin Vanhaelen; Harald von Melchner; Gerald Wirnsberger; Johannes Zuber; Josef M Penninger
Forward and reverse genetics through derivation of haploid mouse embryonic stem cells.
Dominik Handler; Karl Mechtler; Katharina Meixner; Maria Novatchkova; Daniel Olivieri; Ravi Sachidanandam; Alexander Stark; Franz Sebastian Gruber; Julius Brennecke
A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.
Fedor V Karginov; Sihem Cheloufi; Mark M W Chong; Alexander Stark; Andrew D Smith; Gregory J Hannon
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.

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All Publications

2011: Ulrich Elling; Ronan O'Malley; Simon-Pierre Demers; Joseph R Ecker; Gerald Schmauss; Frank Schnuetgen; Daniel Schramek; Andrey I Shukalyuk; William L Stanford; Alexander Stark; Jasmin Taubenschmid; Quentin Vanhaelen; Harald von Melchner; Gerald Wirnsberger; Johannes Zuber; Josef M Penninger
Forward and reverse genetics through derivation of haploid mouse embryonic stem cells.
Cell stem cell 2011;9(6):563-74.
2011: Dominik Handler; Karl Mechtler; Katharina Meixner; Maria Novatchkova; Daniel Olivieri; Ravi Sachidanandam; Alexander Stark; Franz Sebastian Gruber; Julius Brennecke
A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.
The EMBO journal 2011;30(19):3977-93.
2010: Fedor V Karginov; Sihem Cheloufi; Mark M W Chong; Alexander Stark; Andrew D Smith; Gregory J Hannon
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.
Molecular cell 2010;38(6):781-8.
2010: Elizabeth P Murchison; Cesar Tovar; Arthur Hsu; Hannah S Bender; Pouya Kheradpour; Clare A Rebbeck; David Obendorf; Carly Conlan; Melanie Bahlo; Catherine A Blizzard; Stephen Pyecroft; Alexandre Kreiss; Manolis Kellis; Alexander Stark; Timothy T Harkins; Jennifer A Marshall Graves; Gregory M Woods; Gregory J Hannon; Anthony T Papenfuss
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer.
Science (New York, N.Y.) 2010;327(5961):84-7.
2009: Nathaniel D Heintzman; Gary C Hon; R. David Hawkins; Pouya Kheradpour; Alexander Stark; Lindsey F Harp; Zhen Ye; Leonard K Lee; Rhona K Stuart; Christina W Ching; Keith A Ching; Jessica E Antosiewicz-Bourget; Hui Liu; Xinmin Zhang; Roland D Green; Victor V Lobanenkov; Ron Stewart; James A Thomson; Gregory E Crawford; Manolis Kellis; Bing Ren
Histone modifications at human enhancers reflect global cell-type-specific gene expression.
Nature 2009;459(7243):108-12.
2009: Evangelia Petsalaki; Alexander Stark; Eduardo García-Urdiales; Robert B Russell
Accurate prediction of peptide binding sites on protein surfaces.
PLoS computational biology 2009;5(3):e1000335.
2009: Alena Shkumatava; Alexander Stark; Hazel Sive; David P Bartel
Coherent but overlapping expression of microRNAs and their targets during vertebrate development.
Genes & development 2009;23(4):466-81.
2008: Julius Brennecke; Colin D Malone; Alexei A Aravin; Ravi Sachidanandam; Alexander Stark; Gregory J Hannon
An epigenetic role for maternally inherited piRNAs in transposon silencing.
Science (New York, N.Y.) 2008;322(5906):1387-92.
2008: Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
An endogenous small interfering RNA pathway in Drosophila.
Nature 2008;453(7196):798-802.
2008: Elizabeth P Murchison; Pouya Kheradpour; Ravi Sachidanandam; Carly Smith; Emily Hodges; Zhenyu Xuan; Manolis Kellis; Frank Grützner; Alexander Stark; Gregory J Hannon
Conservation of small RNA pathways in platypus.
Genome research 2008;18(6):995-1004.
2008: Natascha Bushati; Alexander Stark; Julius Brennecke; Mohan Balasubramanian
Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila.
Current biology : CB 2008;18(7):501-6.
2008: Alexander Stark; Natascha Bushati; Calvin H Jan; Pouya Kheradpour; Emily Hodges; Julius Brennecke; David P Bartel; Mohan Balasubramanian; Manolis Kellis
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands.
Genes & development 2008;22(1):8-13.
2007: Julia Zeitlinger; Alexander Stark; Manolis Kellis; Joung-Woo Hong; Sergei Nechaev; Karen Adelman; Michael Levine; Richard A Young
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.
Nature genetics 2007;39(12):1512-6.
2007: Alexander Stark; Pouya Kheradpour; Leopold Parts; Julius Brennecke; Emily Hodges; Gregory J Hannon; Manolis Kellis
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes.
Genome research 2007;17(12):1865-79.
2007: J Graham Ruby; Alexander Stark; Wendy K Johnston; Manolis Kellis; David P Bartel; Eric C Lai
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.
Genome research 2007;17(12):1850-64.
2007: Pouya Kheradpour; Alexander Stark; Sushmita Roy; Manolis Kellis
Reliable prediction of regulator targets using 12 Drosophila genomes.
Genome research 2007;17(12):1919-31.
2007: Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.
Cell 2007;128(6):1089-103.
2007: Julia Zeitlinger; Robert P Zinzen; Alexander Stark; Manolis Kellis; Hailan Zhang; Richard A Young; Michael Levine
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
Genes & development 2007;21(4):385-90.
2006: Mohan Balasubramanian; Julius Brennecke; Alexander Stark
Denoising feedback loops by thresholding--a new role for microRNAs.
Genes & development 2006;20(20):2769-72.
2006: Isabelle Behm-Ansmant; Jan Rehwinkel; Tobias Doerks; Alexander Stark; Peer Bork; Elisa Izaurralde
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes.
Genes & development 2006;20(14):1885-98.
2006: Jan Rehwinkel; Pavel Natalin; Alexander Stark; Julius Brennecke; Stephen M Cohen; Elisa Izaurralde
Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster.
Molecular and cellular biology 2006;26(8):2965-75.
2005: Alexander Stark; Julius Brennecke; Natascha Bushati; Robert B Russell; Mohan Balasubramanian
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution.
Cell 2005;123(6):1133-46.
2005: Victor Neduva; Rune Linding; Isabelle Su-Angrand; Alexander Stark; Federico De Masi; Toby J Gibson; Joe Lewis; Luis Serrano; Robert B Russell
Systematic discovery of new recognition peptides mediating protein interaction networks.
PLoS biology 2005;3(12):e405.
2005: Julius Brennecke; Alexander Stark; Mohan Balasubramanian
Not miR-ly muscular: microRNAs and muscle development.
Genes & development 2005;19(19):2261-4.
2005: Julius Brennecke; Alexander Stark; Robert B Russell; Mohan Balasubramanian
Principles of microRNA-target recognition.
PLoS biology 2005;3(3):e85.
2003: Alexander Stark; Julius Brennecke; Robert B Russell; Mohan Balasubramanian
Identification of Drosophila MicroRNA targets.
PLoS biology 2003;1(3):E60.
2003: Julius Brennecke; David R Hipfner; Alexander Stark; Robert B Russell; Mohan Balasubramanian
bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila.
Cell 2003;113(1):25-36.
2002: Raphaël Métivier; Alexander Stark; Gilles Flouriot; Michael R Hübner; Heike Brand; Graziella Penot; Dominique Manu; Stefanie Denger; George Reid; Martin Kos; Robert B Russell; Olivier Kah; pakdel farzad; Frank Gannon
A dynamic structural model for estrogen receptor-alpha activation by ligands, emphasizing the role of interactions between distant A and E domains.
Molecular cell 2002;10(5):1019-32.