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Lincoln Stein

Research Profile

Genes & Molecular Sequences

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Procedures

Chromosome Mapping

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Physiology

Gene Amplification

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MCF-7 Cells

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Publications

TOP 3
Marie Reveiller; Lincoln Stein; Liana Toia; Zhongren Zhou; Mary D'Souza; Santhoshi Bandla; Sayak Ghatak; Tony E Godfrey; William E Gooding; Irina Kalatskaya; Jeffrey H Peters
Bile exposure inhibits expression of squamous differentiation genes in human esophageal epithelial cells.
Jason A Sprowl; Lincoln Stein; Adam Tam; Kerry Reed; Stephen R Armstrong; Baoqing Guo; Stacey L Hembruff; Irina Kalatskaya; Carita Lanner; Amadeo M Parissenti
Alterations in tumor necrosis factor signaling pathways are associated with cytotoxicity and resistance to taxanes: a study in isogenic resistant tumor cells.
Amin Ismail; Irina Kalatskaya; Virginia R Litle; James D Luketich; Arjun Pennathur; Jeffrey H Peters; Marie Reveiller; Lincoln Stein; Liana Toia; Zhongren Zhou; Santhoshi Bandla; Mary D'Souza; William E Gooding; Tony E Godfrey
Early G₁ cyclin-dependent kinases as prognostic markers and potential therapeutic targets in esophageal adenocarcinoma.

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All Publications

2012: Marie Reveiller; Lincoln Stein; Liana Toia; Zhongren Zhou; Mary D'Souza; Santhoshi Bandla; Sayak Ghatak; Tony E Godfrey; William E Gooding; Irina Kalatskaya; Jeffrey H Peters
Bile exposure inhibits expression of squamous differentiation genes in human esophageal epithelial cells.
Annals of surgery 2012;255(6):1113-20.
2012: Jason A Sprowl; Lincoln Stein; Adam Tam; Kerry Reed; Stephen R Armstrong; Baoqing Guo; Stacey L Hembruff; Irina Kalatskaya; Carita Lanner; Amadeo M Parissenti
Alterations in tumor necrosis factor signaling pathways are associated with cytotoxicity and resistance to taxanes: a study in isogenic resistant tumor cells.
Breast cancer research : BCR 2012;14(1):R2.
2011: Amin Ismail; Irina Kalatskaya; Virginia R Litle; James D Luketich; Arjun Pennathur; Jeffrey H Peters; Marie Reveiller; Lincoln Stein; Liana Toia; Zhongren Zhou; Santhoshi Bandla; Mary D'Souza; William E Gooding; Tony E Godfrey
Early G₁ cyclin-dependent kinases as prognostic markers and potential therapeutic targets in esophageal adenocarcinoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2011;17(13):4513-22.
2011: Eric T Sawey; Maia Chanrion; Chunlin Cai; Guanming Wu; Jianping Zhang; Lars Zender; Alice Zhao; Ronald W Busuttil; Herman Yee; Lincoln Stein; Dorothy M French; Richard S Finn; Scott W Lowe; Scott Powers
Identification of a therapeutic strategy targeting amplified FGF19 in liver cancer by Oncogenomic screening.
Cancer cell 2011;19(3):347-58.
2011: David Croft; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; Shahana Mahajan; Bruce May; Nelson Ndegwa; Esther Schmidt; Veronica Shamovsky; Christina Yung; Ewan Birney; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Reactome: a database of reactions, pathways and biological processes.
Nucleic acids research 2011;39(Database issue):D691-7.
2009: Chengzhi Liang; Long Mao; Doreen Ware; Lincoln Stein
Evidence-based gene predictions in plant genomes.
Genome research 2009;19(10):1912-23.
2008: Shulamit Avraham; Chih-Wei Tung; Katica Ilic; Pankaj Jaiswal; Elizabeth A Kellogg; Susan R McCouch; Anuradha Pujar; Leonore Reiser; Seung-Yon Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Peter Stevens; Leszek Vincent; Felipe Zapata; Doreen Ware
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
Nucleic acids research 2008;36(Database issue):D449-54.
2008: Payan Canaran; Edward S Buckler; Jeffrey C Glaubitz; Lincoln Stein; Qi Sun; Wei Zhao; Doreen Ware
Panzea: an update on new content and features.
Nucleic acids research 2008;36(Database issue):D1041-3.
2008: Chengzhi Liang; Pankaj Jaiswal; Claire Hebbard; Shuly Avraham; Edward S Buckler; Terry Casstevens; Bonnie Hurwitz; Susan R McCouch; Junjian Ni; Anuradha Pujar; Dean Ravenscroft; Liya Ren; William Spooner; Isaak Tecle; Jim Thomason; Chih-wei Tung; Xuehong Wei; Immanuel Yap; Ken Youens-Clark; Doreen Ware; Lincoln Stein
Gramene: a growing plant comparative genomics resource.
Nucleic acids research 2008;36(Database issue):D947-53.
2007: Imre Vastrik; Peter D'Eustachio; Esther Schmidt; Geeta Joshi-Tope; Gopal Gopinath; David Croft; Bernard de Bono; Marc Gillespie; Bijay Jassal; Suzanna Lewis; Lisa Matthews; Guanming Wu; Ewan Birney; Lincoln Stein
Reactome: a knowledge base of biologic pathways and processes.
Genome biology 2007;8(3):R39.
2006: Anuradha Pujar; Pankaj Jaiswal; Elizabeth A Kellogg; Katica Ilic; Leszek Vincent; Shulamit Avraham; Peter Stevens; Felipe Zapata; Leonore Reiser; Seung-Yon Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Doreen Ware; Susan R McCouch
Whole-plant growth stage ontology for angiosperms and its application in plant biology.
Plant physiology 2006;142(2):414-28.
2006: Christopher A. Maher; Lincoln Stein; Doreen Ware
Evolution of Arabidopsis microRNA families through duplication events.
Genome research 2006;16(4):510-9.
2006: Payan Canaran; Lincoln Stein; Doreen Ware
Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.
Bioinformatics (Oxford, England) 2006;22(7):885-6.
2006: Wei Zhao; Payan Canaran; Rebecca Jurkuta; Theresa Fulton; Jeffrey Glaubitz; Edward S Buckler; John Doebley; Brandon S Gaut; Major Goodman; Jim Holland; Stephen Kresovich; Michael D McMullen; Lincoln Stein; Doreen Ware
Panzea: a database and resource for molecular and functional diversity in the maize genome.
Nucleic acids research 2006;34(Database issue):D752-7.
2006: Pankaj Jaiswal; Junjian Ni; Immanuel Yap; Doreen Ware; William Spooner; Ken Youens-Clark; Liya Ren; Chengzhi Liang; Wei Zhao; Kiran Ratnapu; Benjamin Faga; Payan Canaran; Molly Fogleman; Claire Hebbard; Shuly Avraham; Steven Schmidt; Terry M Casstevens; Edward S Buckler; Lincoln Stein; Susan R McCouch
Gramene: a bird's eye view of cereal genomes.
Nucleic acids research 2006;34(Database issue):D717-23.
2005: Pankaj Jaiswal; Shulamit Avraham; Katica Ilic; Elizabeth A Kellogg; Susan R McCouch; Anuradha Pujar; Leonore Reiser; Seung-Yon Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Peter Stevens; Leszek Vincent; Doreen Ware; Felipe Zapata
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.
Comparative and functional genomics 2005;6(7-8):388-97.
2005: Xiaokang Pan; Yong Li; Lincoln Stein
Site preferences of insertional mutagenesis agents in Arabidopsis.
Plant physiology 2005;137(1):168-75.
2005: Geeta Joshi-Tope; Marc Gillespie; Imre Vastrik; Peter D'Eustachio; Esther Schmidt; B de Bono; Bijay Jassal; Gopal Gopinath; G R Wu; L Matthews; S Lewis; Ewan Birney; Lincoln Stein
Reactome: a knowledgebase of biological pathways.
Nucleic acids research 2005;33(Database issue):D428-32.
2003: Bruce P May; Hong Liu; Erik Vollbrecht; Lynn Senior; Pablo D Rabinowicz; Donna Roh; Xiaokang Pan; Lincoln Stein; Mike Freeling; Danny Alexander; Robert A Martienssen
Maize-targeted mutagenesis: A knockout resource for maize.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(20):11541-6.
2003: Lincoln Stein
Large scale sequencing.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2003;Chapter 11():Unit11.1.
2003: Tara C Matise; Ravi Sachidanandam; andrew clark; Leonid Kruglyak; Ellen M Wijsman; Jerzy Kakol; Steven Buyske; Buena Chui; Patrick Cohen; Claudia de Toma; Margaret Ehm; Stephen Glanowski; Chunsheng He; Jeremy Heil; Kyriacos Markianos; Ivy McMullen; Margaret Pericak-Vance; Arkadiy Silbergleit; Lincoln Stein; Michael Wagner; Alexander F Wilson; Jeffrey D Winick; Emily S Winn-Deen; Carl T Yamashiro; Howard M Cann; Eric Lai; Arthur L Holden
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set.
American journal of human genetics 2003;73(2):271-84.
2003: Doreen Ware; Lincoln Stein
Comparison of genes among cereals.
Current opinion in plant biology 2003;6(2):121-7.
2003: Xiaokang Pan; Hong Liu; Jonathan Clarke; Jonathan Jones; Mike Bevan; Lincoln Stein
ATIDB: Arabidopsis thaliana insertion database.
Nucleic acids research 2003;31(4):1245-51.
2003: Geeta Joshi-Tope; Imre Vastrik; Gopal Gopinath; L Matthews; Esther Schmidt; Marc Gillespie; Peter D'Eustachio; Bijay Jassal; S Lewis; G Wu; Ewan Birney; Lincoln Stein
The Genome Knowledgebase: a resource for biologists and bioinformaticists.
Cold Spring Harbor symposia on quantitative biology 2003;68():237-43.
2002: Susan R McCouch; Leonid Teytelman; Yunbi Xu; Katarzyna B Lobos; Karen Clare; Mark Walton; Binying Fu; Reycel Maghirang; Zhikang Li; Yongzhong Xing; Qifa Zhang; Izumi Kono; Masahiro Yano; Robert Fjellstrom; Genevieve DeClerck; David Schneider; Samuel Cartinhour; Doreen Ware; Lincoln Stein
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement).
DNA research : an international journal for rapid publication of reports on genes and genomes 2002;9(6):257-79.
2002: Susan R McCouch; Leonid Teytelman; Yunbi Xu; Katarzyna B Lobos; Karen Clare; Mark Walton; Binying Fu; Reycel Maghirang; Zhikang Li; Yongzhong Xing; Qifa Zhang; Izumi Kono; Masahiro Yano; Robert Fjellstrom; Genevieve DeClerck; David Schneider; Samuel Cartinhour; Doreen Ware; Lincoln Stein
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.).
DNA research : an international journal for rapid publication of reports on genes and genomes 2002;9(6):199-207.
2002: Lincoln Stein
Creating databases for biological information: an introduction.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2002;Chapter 9():Unit 9.1.
2002: Lincoln Stein
Creating a bioinformatics nation.
Nature 2002;417(6885):119-20.
2002: Pankaj Jaiswal; Doreen Ware; Junjian Ni; Kuan Chang; Wei Zhao; Steven Schmidt; Xiaokang Pan; Kenneth Clark; Leonid Teytelman; Samuel Cartinhour; Lincoln Stein; Susan R McCouch
Gramene: development and integration of trait and gene ontologies for rice.
Comparative and functional genomics 2002;3(2):132-6.
2002: Doreen Ware; Pankaj Jaiswal; Junjian Ni; Xiaokang Pan; Kuan Chang; Kenneth Clark; Leonid Teytelman; Steve Schmidt; Wei Zhao; Samuel Cartinhour; Susan R McCouch; Lincoln Stein
Gramene: a resource for comparative grass genomics.
Nucleic acids research 2002;30(1):103-5.
2001: H Liu; Ravi Sachidanandam; Lincoln Stein
Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order.
Genome research 2001;11(12):2020-6.
2001: Lincoln Stein; P Sternberg; Richard Durbin; J Thierry-Mieg; John Spieth
WormBase: network access to the genome and biology of Caenorhabditis elegans.
Nucleic acids research 2001;29(1):82-6.
1999: Pablo D Rabinowicz; K Schutz; Neilay Dedhia; Cristy Yordan; LD Parnell; Lincoln Stein; W Richard McCombie; Robert A Martienssen
Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome.
Nature genetics 1999;23(3):305-8.

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