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Christian Stephan

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Alexander Baraniskin; Ansgar Michael Chromik; Maike Ahrens; Claus L Andersen; Steffen Grann Jensen; Susanne Klein-Scory; Dennis Kost; Markus M Lerch; Sven Liffers; Abdelouahid Maghnouj; Julia Mayerle; Helmut E Meyer; Johanna Munding; Stefanie Nöpel-Dünnebacke; Anke Reinacher-Schick; Wolff Schmiegel; Roland Schroers; Irmgard Schwarte-Waldhoff; Christian Stephan; Andrea Tannapfel; Waldemar Uhl; Frank U Weiss; Alexandra Wos; Hannah Zöllner; Stephan Hahn
Circulating U2 small nuclear RNA fragments as a novel diagnostic biomarker for pancreatic and colorectal adenocarcinoma.
Swaantje Casjens; Angelika Eckert; Martin Eisenacher; Gisa Ellrichmann; Caroline May; Helmut E Meyer; Christian Stephan; Michael Turewicz; Dirk Woitalla; Thomas Brüning; Beate Pesch
Diagnostic value of the impairment of olfaction in Parkinson's disease.
Gerhard Mayer; Helmut E Meyer; Luisa Montecchi-Palazzi; Sandra Orchard; David Ovelleiro; James Shofstahl; Christian Stephan; Juan Antonio Vizcaíno; Pierre-Alain Binz; Matthew Chambers; Eric Deutsch; Martin Eisenacher; Henning Hermjakob; Andrew R Jones; Marius Kallhardt; Fredrik Levander
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

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All Publications

2013: Alexander Baraniskin; Ansgar Michael Chromik; Maike Ahrens; Claus L Andersen; Steffen Grann Jensen; Susanne Klein-Scory; Dennis Kost; Markus M Lerch; Sven Liffers; Abdelouahid Maghnouj; Julia Mayerle; Helmut E Meyer; Johanna Munding; Stefanie Nöpel-Dünnebacke; Anke Reinacher-Schick; Wolff Schmiegel; Roland Schroers; Irmgard Schwarte-Waldhoff; Christian Stephan; Andrea Tannapfel; Waldemar Uhl; Frank U Weiss; Alexandra Wos; Hannah Zöllner; Stephan Hahn
Circulating U2 small nuclear RNA fragments as a novel diagnostic biomarker for pancreatic and colorectal adenocarcinoma.
International journal of cancer. Journal international du cancer 2013;132(2):E48-57.
2013: Swaantje Casjens; Angelika Eckert; Martin Eisenacher; Gisa Ellrichmann; Caroline May; Helmut E Meyer; Christian Stephan; Michael Turewicz; Dirk Woitalla; Thomas Brüning; Beate Pesch
Diagnostic value of the impairment of olfaction in Parkinson's disease.
PloS one 2013;8(5):e64735.
2013: Gerhard Mayer; Helmut E Meyer; Luisa Montecchi-Palazzi; Sandra Orchard; David Ovelleiro; James Shofstahl; Christian Stephan; Juan Antonio Vizcaíno; Pierre-Alain Binz; Matthew Chambers; Eric Deutsch; Martin Eisenacher; Henning Hermjakob; Andrew R Jones; Marius Kallhardt; Fredrik Levander
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.
Database : the journal of biological databases and curation 2013;2013():bat009.
2012: Bernd Gröttrup; Katrin Marcus; Helmut E Meyer; Miriam Böckmann; Lea T Grinberg; Christian Stephan; Young Mok Park
Translational proteomics in neurodegenerative diseases--16th HUPO BPP workshop September 5, 2011 Geneva, Switzerland.
Proteomics 2012;12(3):356-8.
2012: Martin Eisenacher; Markus-Hermann Koch; Michael Kohl; Michael Turewicz; Julian Uszkoreit; Christian Stephan
Search and decoy: the automatic identification of mass spectra.
Methods in molecular biology (Clifton, N.J.) 2012;893():445-88.
2011: Thorsten Müller; Andreas Schrötter; Christian Stephan; Julian Uszkoreit; Maike Ahrens; Martin Eisenacher; Stefan Helling; Christina Loosse; Helmut E Meyer; Katrin Marcus
Sense and nonsense of pathway analysis software in proteomics.
Journal of proteome research 2011;10(12):5398-408.
2011: Bernd Gröttrup; Young H Kim; Sang K Lee; Katrin Marcus; Helmut E Meyer; Christian Stephan; Jens Wiltfang; Lea T Grinberg; Young M Park
Creating a human brain proteome atlas--13th HUPO BPP Workshop March 30-31, 2010, Ochang, Korea.
Proteomics 2011;11(14):2759-62.
2011: Martin Eisenacher; Anke Schnabel; Christian Stephan
Quality meets quantity - quality control, data standards and repositories.
Proteomics 2011;11(6):1031-6.
2010: Bernd Gröttrup; Martin Eisenacher; Christian Stephan; Katrin Marcus; Bonghee Lee; Helmut E Meyer; Young Mok Park
Human Brain Proteome Project - 12th HUPO BPP Workshop. 26 September 2009, Toronto, Canada.
Proteomics 2010;10(11):2071-3.
2010: Katharina Podwojski; Martin Eisenacher; Michael Kohl; Michael Turewicz; Helmut E Meyer; Jörg Rahnenführer; Christian Stephan
Peek a peak: a glance at statistics for quantitative label-free proteomics.
Expert review of proteomics 2010;7(2):249-61.
2010: Christian Stephan; Michael Kohl; Michael Turewicz; Katharina Podwojski; Helmut E Meyer; Martin Eisenacher
Using Laboratory Information Management Systems as central part of a proteomics data workflow.
Proteomics 2010;10(6):1230-49.
2010: Christian Stephan; Martin Eisenacher; Michael Kohl; Helmut E Meyer
Proteomics data collection (ProDaC): publishing and collecting proteomics data sets in public repositories using standard formats.
Methods in molecular biology (Clifton, N.J.) 2010;604():345-68.
2009: Martin Eisenacher; Lennart Martens; Tanja Hardt; Michael Kohl; Harald Barsnes; Kenny Helsens; Jari Häkkinen; Fredrik Levander; Ruedi Aebersold; Joël Vandekerckhove; Michael J Dunn; Frederique Lisacek; Jennifer A Siepen; Simon J Hubbard; Pierre-Alain Binz; Martin Blüggel; Herbert Thiele; John Cottrell; Helmut E Meyer; Rolf Apweiler; Christian Stephan
Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).
Proteomics 2009;9(15):3928-33.
2009: Martin Eisenacher; Lennart Martens; Harald Barsnes; Tanja Hardt; Michael Kohl; Jari Häkkinen; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.
Proteomics 2009;9(14):3626-9.
2009: Gereon Poschmann; Barbara Sitek; Bence Sipos; Anna Ulrich; Sebastian Wiese; Christian Stephan; Bettina Warscheid; Günter Klöppel; Ann Vander Borght; Frans C S Ramaekers; Helmut E Meyer; Kai Stühler
Identification of proteomic differences between squamous cell carcinoma of the lung and bronchial epithelium.
Molecular & cellular proteomics : MCP 2009;8(5):1105-16.
2009: Barbara Sitek; Bence Sipos; Ibrahim Alkatout; Gereon Poschmann; Christian Stephan; Thomas Schulenborg; Katrin Marcus; Jutta Lüttges; Dag-Daniel Dittert; Gustavo Baretton; Wolff Schmiegel; Stephan Hahn; Günter Klöppel; Helmut E Meyer; Kai Stühler
Analysis of the pancreatic tumor progression by a quantitative proteomic approach and immunhistochemical validation.
Journal of proteome research 2009;8(4):1647-56.
2009: Katharina Podwojski; Arno Fritsch; Daniel C Chamrad; Wolfgang Paul; Barbara Sitek; Kai Stühler; Petra Mutzel; Christian Stephan; Helmut E Meyer; Wolfgang Urfer; Katja Ickstadt; Jörg Rahnenführer
Retention time alignment algorithms for LC/MS data must consider non-linear shifts.
Bioinformatics (Oxford, England) 2009;25(6):758-64.
2009: Martin Eisenacher; Michael Kohl; Lennart Martens; Harald Barsnes; Tanja Hardt; Fredrik Levander; Jari Häkkinen; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands.
Proteomics 2009;9(2):218-22.
2008: Michael Hamacher; Martin Eisenacher; Helmut E Meyer; Christian Stephan
Proteomics today: bioinformatics at its best. Proteomics and Bioinformatics -- an inseparable couple.
Proteomics 2008;8(22):4616-7.
2008: Michael Hamacher; Martin Eisenacher; Florian Tribl; Christian Stephan; Katrin Marcus; Tanja Hardt; Jens Wiltfang; Lennart Martens; Dominic Desiderio; Howard B Gutstein; Young Mok Park; Helmut E Meyer
The HUPO Brain Proteome project wish list--summary of the 9(th) HUPO BPP Workshop 9-10 January 2008, Barbados.
Proteomics 2008;8(11):2160-4.
2008: Michael Hamacher; Christian Stephan; Tanja Hardt; Martin Eisenacher; Andreas Henkel; Jens Wiltfang; Connie R Jimenez; Young Mok Park; Katrin Marcus; Helmut E Meyer
Applications in brain proteomics: 8(th) HUPO Brain Proteome Project Workshop 7 October 2007, Seoul, Korea.
Proteomics 2008;8(9):1750-3.
2008: Michael Hamacher; Christian Stephan; Martin Eisenacher; Tanja Hardt; Katrin Marcus; Helmut E Meyer
Maintaining standardization: an update of the HUPO Brain Proteome Project.
Expert review of proteomics 2008;5(2):165-73.
2008: Martin Eisenacher; Tanja Hardt; Michael Hamacher; Lennart Martens; Jari Häkkinen; Fredrik Levander; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea.
Proteomics 2008;8(7):1326-30.
2008: Kai A Reidegeld; Martin Eisenacher; Michael Kohl; Daniel C Chamrad; Gerhard Körting; Martin Blüggel; Helmut E Meyer; Christian Stephan
An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications.
Proteomics 2008;8(6):1129-37.
2008: Michael Hamacher; Tanja Hardt; Andre van Hall; Christian Stephan; Katrin Marcus; Helmut E Meyer
Inside SMP proteomics: six years German Human Brain Proteome Project (HBPP) - a summary.
Proteomics 2008;8(6):1118-28.
2008: Michael Hamacher; Katrin Marcus; Christian Stephan; Joachim Klose; Young Mok Park; Helmut E Meyer
HUPO Brain Proteome Project: toward a code of conduct.
Molecular & cellular proteomics : MCP 2008;7(2):457.
2008: Romano Hebeler; Silke Oeljeklaus; Kai A Reidegeld; Martin Eisenacher; Christian Stephan; Barbara Sitek; Kai Stühler; Helmut E Meyer; Marcel J G Sturre; Paul P Dijkwel; Bettina Warscheid
Study of early leaf senescence in Arabidopsis thaliana by quantitative proteomics using reciprocal 14N/15N labeling and difference gel electrophoresis.
Molecular & cellular proteomics : MCP 2008;7(1):108-20.
2007: Sebastian Wiese; Thomas Gronemeyer; Rob Ofman; Markus Kunze; Cláudia P Grou; José A Almeida; Martin Eisenacher; Christian Stephan; Heiko Hayen; Lukas Schollenberger; Thomas Korosec; Hans R Waterham; Wolfgang Schliebs; Ralf Erdmann; Johannes Berger; Helmut E Meyer; Wilhelm Just; Jorge E Azevedo; Ronald J A Wanders; Bettina Warscheid
Proteomics characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling.
Molecular & cellular proteomics : MCP 2007;6(12):2045-57.
2007: Martin Eisenacher; Tanja Hardt; Michael Hamacher; Lennart Martens; Jari Häkkinen; Fredrik Levander; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.
Proteomics 2007;7(17):3034-7.
2007: Michael Hamacher; Christian Stephan; Martin Eisenacher; Piotr Lewczuk; Jens Wiltfang; Lennart Martens; Juan Antonio Vizcaino; Kyung-Hoon Kwon; Jong Shin Yoo; Young Mok Park; Johannes Beckers; Marion Horsch; Martin Hrabé De Angelis; Zang-Hee Cho; Rolf Apweiler; Helmut E Meyer
High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK.
Proteomics 2007;7(15):2490-6.
2007: Sandra Orchard; Andrew R Jones; Christian Stephan; Pierre-Alain Binz
The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006.
Proteomics 2007;7(7):1006-8.
2007: Michael Hamacher; Christian Stephan; Martin Eisenacher; Andre van Hall; Katrin Marcus; Lennart Martens; Young Mok Park; Howard B Gutstein; Friedrich W Herberg; Helmut E Meyer
Proteomics for everyday use: activities of the HUPO Brain Proteome Project during the 5th HUPO World Congress.
Proteomics 2007;7(7):1012-5.
2006: Christian Stephan; Kai A Reidegeld; Michael Hamacher; Andre van Hall; Katrin Marcus; Chris Taylor; Philip Jones; Michael Müller; Rolf Apweiler; Lennart Martens; Gerhard Körting; Daniel C Chamrad; Herbert Thiele; Martin Blüggel; David Parkinson; Pierre-Alain Binz; Andrew Lyall; Helmut E Meyer
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase.
Proteomics 2006;6(18):5015-29.
2006: Kai Stühler; Kathy Pfeiffer; Cornelia Joppich; Christian Stephan; Klaus Jung; Michael Müller; Oliver Schmidt; Andre van Hall; Michael Hamacher; Wolfgang Urfer; Helmut E Meyer; Katrin Marcus
Pilot study of the Human Proteome Organisation Brain Proteome Project: applying different 2-DE techniques to monitor proteomic changes during murine brain development.
Proteomics 2006;6(18):4899-913.
2006: Kai A Reidegeld; Michael Müller; Christian Stephan; Martin Blüggel; Michael Hamacher; Lennart Martens; Gerhard Körting; Daniel C Chamrad; David Parkinson; Rolf Apweiler; Helmut E Meyer; Katrin Marcus
The power of cooperative investigation: summary and comparison of the HUPO Brain Proteome Project pilot study results.
Proteomics 2006;6(18):4997-5014.
2006: Lennart Martens; Michael Müller; Christian Stephan; Michael Hamacher; Kai A Reidegeld; Helmut E Meyer; Martin Blüggel; Joël Vandekerckhove; Kris Gevaert; Rolf Apweiler
A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies.
Proteomics 2006;6(18):5076-86.
2006: Michael Mueller; Lennart Martens; Kai A Reidegeld; Michael Hamacher; Christian Stephan; Martin Blüggel; Gerhard Körting; Daniel C Chamrad; Christian Scheer; Katrin Marcus; Helmut E Meyer; Rolf Apweiler
Functional annotation of proteins identified in human brain during the HUPO Brain Proteome Project pilot study.
Proteomics 2006;6(18):5059-75.
2006: Daniel C Chamrad; Gerhard Körting; Heike Schäfer; Christian Stephan; Herbert Thiele; Rolf Apweiler; Helmut E Meyer; Katrin Marcus; Martin Blüggel
Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data.
Proteomics 2006;6(18):5048-58.
2006: Michael Hamacher; Katrin Marcus; Andre van Hall; Helmut E Meyer; Christian Stephan
The HUPO Brain Proteome Project--no need to hurry?
Journal of neural transmission (Vienna, Austria : 1996) 2006;113(8):963-71.
2006: Michael Hamacher; Christian Stephan; Nadine Palacios Bustamante; Andre van Hall; Katrin Marcus; Kai A Reidegeld; Ashling Gantly; Stephen R Pennington; Michael J Dunn; Helmut E Meyer
Bridging Proteomics and Medical Science - the 5th HUPO Brain Proteome Workshop in Dublin, Ireland.
Proteomics 2006;6(9):2634-7.
2006: Michael Hamacher; Christian Stephan; Martin Blüggel; Daniel C Chamrad; Gerhard Körting; Lennart Martens; Michael Müller; Henning Hermjakob; David Parkinson; Andrew W Dowsey; Kai A Reidegeld; Katrin Marcus; Michael J Dunn; Helmut E Meyer; Rolf Apweiler
The HUPO Brain Proteome Project jamboree: centralised summary of the pilot studies.
Proteomics 2006;6(6):1719-21.
2006: Michael Hamacher; Christian Stephan; Nadine Palacios Bustamante; Andre van Hall; Katrin Marcus; Helmut E Meyer
4(th) HUPO Brain Proteome Project Workshop in Munich, Germany.
Proteomics 2006;6(1):14-5.
2005: Christian Stephan; Michael Hamacher; Martin Blüggel; Gerhard Körting; Daniel C Chamrad; Christian Scheer; Katrin Marcus; Kai A Reidegeld; Christiane Lohaus; Heike Schäfer; Lennart Martens; Philip Jones; Michael Müller; Kevin Auyeung; Chris Taylor; Pierre-Alain Binz; Herbert Thiele; David Parkinson; Helmut E Meyer; Rolf Apweiler
5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame.
Proteomics 2005;5(14):3560-2.
2005: Michael Hamacher; Katrin Marcus; Christian Stephan; Andre van Hall; Helmut E Meyer
HUPO BPP Workshop on Mouse Models for Neurodegeneration--Choosing the right models.
Proteomics 2005;5(14):3558-9.
2005: Christian Stephan; Kai A Reidegeld; Helmut E Meyer; Michael Hamacher
HUPO Brain Proteome Project Pilot Studies: bioinformatics at work.
Proteomics 2005;5(11):2716-7.
2004: Martin Blüggel; Sonja Bailey; Gerhard Körting; Christian Stephan; Kai A Reidegeld; Herbert Thiele; Rolf Apweiler; Michael Hamacher; Helmut E Meyer
Towards data management of the HUPO Human Brain Proteome Project pilot phase.
Proteomics 2004;4(8):2361-2.